Contig 011412:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044L17Sequence740011412 (2)emb|CDP01916.1|3e-150unnamed protein product [Coffea canephora]807011412 (2)ref|XP_009588908.1|4e-173PREDICTED: GDP-mannose 4,6 dehydratase 1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF044L17-                               GGACATTTCCATTTTGCCCCATTTTCCCAAGACCCAACAC
                      ____________________________________________________________
consensus                                 GGACATTTCCATTTTGCCCCATTTTCCCAAGACCCAACAC
 
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JMSF044L17-           CGTCATGGCTTCCGACAGATCTGAATCCACCGCTAACGGCGGCGAAATGCCATCCCCAAC
                      ____________________________________________________________
consensus             CGTCATGGCTTCCGACAGATCTGAATCCACCGCTAACGGCGGCGAAATGCCATCCCCAAC
 
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JMSF044L17-           TCCGGCGCTTCAAACTCCCCGGAAAATCGCACTGATAACTGGCATCACTGGCCAAGACGG
                      ____________________________________________________________
consensus             TCCGGCGCTTCAAACTCCCCGGAAAATCGCACTGATAACTGGCATCACTGGCCAAGACGG
 
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JMSF044L17-           CTCATACCTCACTGAACTTCTCCTGGACAAAGGCTATGAAGTTCACGGCCTCATTCGTAG
                      ____________________________________________________________
consensus             CTCATACCTCACTGAACTTCTCCTGGACAAAGGCTATGAAGTTCACGGCCTCATTCGTAG
 
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JMSF044L17-           ATCTTCGAATTTTAATACGCAGAGGATCAATCACATCTACATCGATCCCCACAATGCTCA
                      ____________________________________________________________
consensus             ATCTTCGAATTTTAATACGCAGAGGATCAATCACATCTACATCGATCCCCACAATGCTCA
 
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JMSF044L17-           CAAGGCGCGTATGAAGCTCCACTACGCCGACCTCACCGACGCCTCCTCTCTCCGCCGCTG
                      ____________________________________________________________
consensus             CAAGGCGCGTATGAAGCTCCACTACGCCGACCTCACCGACGCCTCCTCTCTCCGCCGCTG
 
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JMSF044L17-           GCTCGACACCATCCTTCCCGACGAGGTCTACAACCTCGCCGCTCAGTCTCACGTCGCTGT
                      ____________________________________________________________
consensus             GCTCGACACCATCCTTCCCGACGAGGTCTACAACCTCGCCGCTCAGTCTCACGTCGCTGT
 
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JMSF044L17-           CTCCTTCGAAATCCCTGATTACACCGCCGACGTGGTCGCCACCGGCGCGCTCCGCCTCCT
rJMSF044L17+                                           GGTCGCCACCGGCGCGNTCCGCNTCCT
                      ____________________________________________________________
consensus             CTCCTTCGAAATCCCTGATTACACCGCCGACGTGGTCGCCACCGGCGCGCTCCGCCTCCT
 
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JMSF044L17-           GGAGGCGGTGCGGTCCCACATCTCGGCCACCGGTAGGTCTCATATGAGGTACTACCAAGC
rJMSF044L17+          GGAGGCGGTGCGGTCCCACATCTCGGCCACCGGTAGGTCTCATATGAGGTACTACCAAGC
                      ____________________________________________________________
consensus             GGAGGCGGTGCGGTCCCACATCTCGGCCACCGGTAGGTCTCATATGAGGTACTACCAAGC
 
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JMSF044L17-           CGGGTCGTCGGAGATGTTCGGATCCACTCCGCCGCCGCAGTCGGAGTCGACTCCTTTCCA
rJMSF044L17+          CGGGTCGTCGGAGATGTTCGGATCCACTCCGCCGCCGCAGTCGGAGTCGACTCCTTTCCA
                      ____________________________________________________________
consensus             CGGGTCGTCGGAGATGTTCGGATCCACTCCGCCGCCGCAGTCGGAGTCGACTCCTTTCCA
 
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JMSF044L17-           TCCGAGATCTCCCTACGCGGCGTCGAAATGCGCGGCTCATTGGTACACCGTGAATTACCG
rJMSF044L17+          TCCGAGATCTCCCTACGCGGCGTCGAAATGCGCGGCTCATTGGTACACCGTGAATTACCG
                      ____________________________________________________________
consensus             TCCGAGATCTCCCTACGCGGCGTCGAAATGCGCGGCTCATTGGTACACCGTGAATTACCG
 
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JMSF044L17-           GGAGGCCTACGGGATCTTCGCGTGCAACGGCATCCTGTTCAACCACGAATCCCCGAGACG
rJMSF044L17+          GGAGGCCTACGGGATCTTCGCGTGCAACGGCATCCTGTTCAACCACGAATCCCCGAGACG
                      ____________________________________________________________
consensus             GGAGGCCTACGGGATCTTCGCGTGCAACGGCATCCTGTTCAACCACGAATCCCCGAGACG
 
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JMSF044L17-           CGGGGAGAATTTCGTGACCCGGAAGATCACCCGGGCCGTG                    
rJMSF044L17+          CGGGGAGAATTTCGTGACCCGGAAGATCACCCGGGCCGTGGGGCGGATCAAAATCGGGCT
                      ____________________________________________________________
consensus             CGGGGAGAATTTCGTGACCCGGAAGATCACCCGGGCCGTGGGGCGGATCAAAATCGGGCT
 
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rJMSF044L17+          CCAAAGCAAGCTCTTCCTGGGGAACTTACAGGCGTCAAGGGACTGGGGATTCGCAGGGGA
                      ____________________________________________________________
consensus             CCAAAGCAAGCTCTTCCTGGGGAACTTACAGGCGTCAAGGGACTGGGGATTCGCAGGGGA
 
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rJMSF044L17+          CTATGTGGAAGCAATGTGGATGATGCTTCAGCAGGAGAAGCCGGACGATTACGTGGTGGC
                      ____________________________________________________________
consensus             CTATGTGGAAGCAATGTGGATGATGCTTCAGCAGGAGAAGCCGGACGATTACGTGGTGGC
 
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rJMSF044L17+          CACGGAGGAGTCTCACACCGTGCAGGAGTTCTTGGAGGTGGCGTTTGGGTATGTTGGGCT
                      ____________________________________________________________
consensus             CACGGAGGAGTCTCACACCGTGCAGGAGTTCTTGGAGGTGGCGTTTGGGTATGTTGGGCT
 
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rJMSF044L17+          GAACTGGAAAGATCACGTCGTGATTGACAAGCGCTACTTCCGGCCGACGGAGGTGGATAA
                      ____________________________________________________________
consensus             GAACTGGAAAGATCACGTCGTGATTGACAAGCGCTACTTCCGGCCGACGGAGGTGGATAA
 
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rJMSF044L17+          TCTGAAAGGCGATGCCAGCAAGGCGAAGAAGGTGTTGGGGTGGAAACCCAAAGTGGGATT
                      ____________________________________________________________
consensus             TCTGAAAGGCGATGCCAGCAAGGCGAAGAAGGTGTTGGGGTGGAAACCCAAAGTGGGATT
 
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rJMSF044L17+          TCAGCAGCTGGTGAAGATGATGGTGGATGAAGATATCGATATGGCTAAAAGGGAGAAGGT
                      ____________________________________________________________
consensus             TCAGCAGCTGGTGAAGATGATGGTGGATGAAGATATCGATATGGCTAAAAGGGAGAAGGT
 
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rJMSF044L17+          TCTTGTAGATGCTGGATACATGGATGCCCAGCAACAACCTTAATCACTTCCATTCAACTC
                      ____________________________________________________________
consensus             TCTTGTAGATGCTGGATACATGGATGCCCAGCAACAACCTTAATCACTTCCATTCAACTC
 
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rJMSF044L17+          AACGGTAGCTACAAACAATATCATTTATCTGTTGTTTTCCAGAATCACTTTCTCTCTCTC
                      ____________________________________________________________
consensus             AACGGTAGCTACAAACAATATCATTTATCTGTTGTTTTCCAGAATCACTTTCTCTCTCTC