Contig 011411:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN020D19-                                                                 TGTTTC
                      ____________________________________________________________
consensus                                                                   TGTTTC
 
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JMFN020D19-           TGGGTGATTTCATTTTGATTTGCCGATCCCTTGTTGTATATTTCCCAGCGTCACTTCATT
                      ____________________________________________________________
consensus             TGGGTGATTTCATTTTGATTTGCCGATCCCTTGTTGTATATTTCCCAGCGTCACTTCATT
 
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JMFN020D19-           AGTTTTAAGATGGTTGAATTCAGTGATAATCTTAAAAGGAATTGTGTACAAAATTCCTAA
                      ____________________________________________________________
consensus             AGTTTTAAGATGGTTGAATTCAGTGATAATCTTAAAAGGAATTGTGTACAAAATTCCTAA
 
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JMFN020D19-           TCTTGAGGAGCTGTCTTTCAGTTGTTGTAAAGGGATCACTAATTTTGAGATCAGCAGTCC
                      ____________________________________________________________
consensus             TCTTGAGGAGCTGTCTTTCAGTTGTTGTAAAGGGATCACTAATTTTGAGATCAGCAGTCC
 
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JMFN020D19-           AAAACTTGAAAGCTTGAAGGTTATTGGTGCTCTGAGTTGGAGGCTTGATGAATCCAGATG
                      ____________________________________________________________
consensus             AAAACTTGAAAGCTTGAAGGTTATTGGTGCTCTGAGTTGGAGGCTTGATGAATCCAGATG
 
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JMFN020D19-           GTTTACCCTTTATTTGAGAACAATTAAGACTCTTTGCTTGATTGCCAGTTTGTTGCCTTG
rJMSF036A01+                                                                   GTG
rJMSF044J17+                                                                    TG
                      ____________________________________________________________
consensus             GTTTACCCTTTATTTGAGAACAATTAAGACTCTTTGCTTGATTGCCAGTTTGTTGCCTTG
 
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JMFN020D19-           TAAAGATGCAGAAATAGCAACAGTGACATTCCCAACGGCAATAAATTTGCGAGTGATTGA
rJMSF036A01+          TAAAGATGCAGAAATAGCGAATGTGACATTCCCTACCGCAATAAATTTGCAAGTGATTGA
rJMSF044J17+          TAAAGATGCAGAAATAGCGAATGTGACATTCCCTACCGCAATAAATTTGCAAGTGATTGA
                      ____________________________________________________________
consensus             TAAAGATGCAGAAATAGCGAATGTGACATTCCCTACCGCAATAAATTTGCAAGTGATTGA
 
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JMFN020D19-           GCTGTATGATTTAAGTGTTGCATGTGCAGAGCAGCTTGCCTTTGTTTTGCAGTTGCTTCA
rJMSF036A01+          GTTGTATGATTTAAGTGTTTCATGTGCAGCGCAGTTTGCCTTTGTTTTGCAGTTGCTTCA
rJMSF044J17+          GTTGTATGATTTAAGTGTTTCATGTGCAGCGCAGTTTGCCTTTGTTTTGCAGTTGCTTCA
                      ____________________________________________________________
consensus             GTTGTATGATTTAAGTGTTTCATGTGCAGCGCAGTTTGCCTTTGTTTTGCAGTTGCTTCA
 
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JMFN020D19-           ACATTCCCCCAACCTATGCGAGCTGAAGATTACGGCATT                     
rJMSF036A01+          AAATTCCCCCAACCTATGCCAGTTGAAGATTATGGCATTGAATTGTCTATGTTCTTGTGA
rJMSF044J17+          AAATTCCCCCAACCTATGCCAGTTGAAGATTATGGCATTGAATTGTCTATGTTCTTGTGA
                      ____________________________________________________________
consensus             AAATTCCCCCAACCTATGCCAGTTGAAGATTATGGCATTGAATTGTCTATGTTCTTGTGA
 
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rJMSF036A01+          TCTAACAACGGGCACAAGTCTTTTGGAGGAACAAAACTGCTGCATTATTAAGCAAGATCT
rJMSF044J17+          TCTAACAACGGGCACAAGTCTTTTGGAGGAACAAAACTGCTGCATTATTAAGCAAGATCT
                      ____________________________________________________________
consensus             TCTAACAACGGGCACAAGTCTTTTGGAGGAACAAAACTGCTGCATTATTAAGCAAGATCT
 
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rJMSF036A01+          GAAGATTCTTAACACAATCATAATTGTCGGGTTTAGTGGATTTACACTTGAAATGCTTTT
rJMSF044J17+          GAAGATTCTTAACACAATCATAATTGTCGGGTTTAGTGGATTTACACTTGAAATGCTTTT
                      ____________________________________________________________
consensus             GAAGATTCTTAACACAATCATAATTGTCGGGTTTAGTGGATTTACACTTGAAATGCTTTT
 
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rJMSF036A01+          TGTGAAAATGCTGCTCACAAAATCTCCTACACTAGAGAGAGTTGCTATTATGGAATATGT
rJMSF044J17+          TGTGAAAATGCTGCTCACAAAATCTCCTACACTAGAGAGAGTTGCTATTATGGAATATGT
                      ____________________________________________________________
consensus             TGTGAAAATGCTGCTCACAAAATCTCCTACACTAGAGAGAGTTGCTATTATGGAATATGT
 
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rJMSF036A01+          TGATACTGATATAGAAGATACCTCCGAAGATGTCAATAGCTGGCGAAAGGAATTGTTGTG
rJMSF044J17+          TGATACTGATATAGAAGATACCTCCGAAGATGTCAATAGCTGGCGAAAGGAATTGTTGTG
                      ____________________________________________________________
consensus             TGATACTGATATAGAAGATACCTCCGAAGATGTCAATAGCTGGCGAAAGGAATTGTTGTG
 
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rJMSF036A01+          TTTTCCTCGCGCATCTCCGAAAGCACAACTTGTTTGCACTGAAAATGACGACTCCGTGTT
rJMSF044J17+          TTTTCCTCGCGCATCTCCGAAAGCACAACTTGTTTGCACTGAAAATGACGACTCCGTGTT
                      ____________________________________________________________
consensus             TTTTCCTCGCGCATCTCCGAAAGCACAACTTGTTTGCACTGAAAATGACGACTCCGTGTT
 
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rJMSF036A01+          TGAACTATTTGATTATATGTGGTTTTAACCTTGTAGGAATTTAGTATGATGAGGCTCCAT
rJMSF044J17+          TGAACTATTTGATTATATGTGGTTTTAACCTTGTAGGAATTTAGTATGATGAGGCTCCAT
                      ____________________________________________________________
consensus             TGAACTATTTGATTATATGTGGTTTTAACCTTGTAGGAATTTAGTATGATGAGGCTCCAT
 
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rJMSF036A01+          GGGTTAAGTTTGGATGCAACCTAGAAATGTAATCAAATGGTTGTGGTGGAAGT       
rJMSF044J17+          GGGTTAAGTTTGGATGCAACCTAGAAATGTAATCAAATGGTTGTGGTGGAAGTTGAAACC
                      ____________________________________________________________
consensus             GGGTTAAGTTTGGATGCAACCTAGAAATGTAATCAAATGGTTGTGGTGGAAGTTGAAACC