Contig 011407:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017G18Sequence489000615 (5)ref|XP_006367308.1|7e-26PREDICTED: J domain-containing protein required for chloroplast accumulation re745011407 (4)ref|XP_009599410.1|3e-66PREDICTED: J domain-containing protein required for chloroplast accumulation re
JMSF028E13Sequence677000615 (5)ref|XP_006367308.1|6e-44PREDICTED: J domain-containing protein required for chloroplast accumulation re798011407 (4)ref|XP_009599410.1|1e-80PREDICTED: J domain-containing protein required for chloroplast accumulation re
JMSF043J09Sequence717000615 (5)ref|XP_006367308.1|5e-46PREDICTED: J domain-containing protein required for chloroplast accumulation re724011407 (4)ref|XP_009599410.1|4e-68PREDICTED: J domain-containing protein required for chloroplast accumulation re
JMSF045D03Sequence707000615 (5)ref|XP_006367308.1|1e-43PREDICTED: J domain-containing protein required for chloroplast accumulation re696011407 (4)ref|XP_009599410.1|9e-69PREDICTED: J domain-containing protein required for chloroplast accumulation re

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF028E13+ ACTTCCATGCAGT
                      ____________________________________________________________
consensus ACTTCCATGCAGT
 
. : . : . : . : . : . :
rJMSF028E13+ GGAAAAAGAAACGGGTGACAGTNCAAGACAGACGAACGAGGAAGTGCAAATTCCTAGTAT
                      ____________________________________________________________
consensus GGAAAAAGAAACGGGTGACAGTNCAAGACAGACGAACGAGGAAGTGCAAATTCCTAGTAT
 
. : . : . : . : . : . :
rJMSF028E13+ GAATAAAACAGCAGCAGATGCTTTTCAAAGGGTGGAGCAAATCCTTAACACGAAGGAGAA
                      ____________________________________________________________
consensus GAATAAAACAGCAGCAGATGCTTTTCAAAGGGTGGAGCAAATCCTTAACACGAAGGAGAA
 
. : . : . : . : . : . :
rJMSF028E13+ AACAAATAAACATTCTTATAAGAAACCCTCGATTCATCAAACTACCACTCATCCTGCTGA
rJMSF045D03+ CATTCTTATAAGAAACCCTCGATTCATCAAACTACCACTCATCCTGCTGA
rJMSF017G18+ CCTCGATTCATCAAACTACCACTCATCCTGCTGA
rJMSF043J09+ CTGA
                      ____________________________________________________________
consensus AACAAATAAACATTCTTATAAGAAACCCTCGATTCATCAAACTACCACTCATCCTGCTGA
 
. : . : . : . : . : . :
rJMSF028E13+ TCAGAACAATGCTTCATCATTTTCTGAACCTATTCGAAACGGTCTGAGGCGTTCAGTAGG
rJMSF045D03+ TCAGAACAATGCTTCATCATTTTCTGAACCTATTCGAAACGGTCTGAGGCGTTCAGTAGG
rJMSF017G18+ TCAGAACAATGCTTCATCA-TTTCTGAACCTATTCGAAACGGTCTGAGGCGTTCAGTAGG
rJMSF043J09+ TCAGAACAATGCTTCATCATTTTCTGAACCTATTCGAAACGGTCTGAGGCGTTCAGTAGG
                      ____________________________________________________________
consensus TCAGAACAATGCTTCATCATTTTCTGAACCTATTCGAAACGGTCTGAGGCGTTCAGTAGG
 
. : . : . : . : . : . :
rJMSF028E13+ AAGTGCAGATGATCTCTTCCATGGAAGCTTTGTGGTAGAAGAGTTATATGAAGATGAGAG
rJMSF045D03+ AAGTGCAGATGATCTCTTCCATGGAAGCTTTGTGGTAGAAGAGTTATATGAAGATGAGAG
rJMSF017G18+ AAGTGCAGATGATCTCTTCCATGGAAGCTTTGTGGTAGAAGAGTTATATGAAGATGAGAG
rJMSF043J09+ AAGTGCAGATGATCTCTTCCATGGAAGCTTTGTGGTAGAAGAGTTATATGAAGATGAGAG
                      ____________________________________________________________
consensus AAGTGCAGATGATCTCTTCCATGGAAGCTTTGTGGTAGAAGAGTTATATGAAGATGAGAG
 
. : . : . : . : . : . :
rJMSF028E13+ CAAACCATTACAGAAGAGTGGTGAATCTCACGACATGAAAGCTTCAGATGCAAAGATTCA
rJMSF045D03+ CAAACCATTACAGAAGAGTGGTGAATCTCACGACATGAAAGCTTCAGATGCAAAGATTCA
rJMSF017G18+ CAAACCATTACAGAAGAGTGGTGAATCTCACGACATGAAAGCTTCAGATGCAAAGATTCA
rJMSF043J09+ CAAACCATTACAGAAGAGTGGTGAATCTCACGACATGAAAGCTTCAGATGCAAAGATTCA
                      ____________________________________________________________
consensus CAAACCATTACAGAAGAGTGGTGAATCTCACGACATGAAAGCTTCAGATGCAAAGATTCA
 
. : . : . : . : . : . :
rJMSF028E13+ GCAGTGGTCACAGGGGAGGAAAGGAAATATTCGGTCACTGCTTTCGACCTTACAATTAGT
rJMSF045D03+ GCAGTGGTCACAGGGGAGGAAAGGAAATATTCGGTCACTGCTTTCGACCTTACAATTAGT
rJMSF017G18+ GCAGTGGTCACAGGGGAGGAAAGGAAATATTCGGTCACTGCTTTCGACCTTACAATTAGT
rJMSF043J09+ GCAGTGGTCACAGGGGAGGAAAGGAAATATTCGGTCACTGCTTTCGACCTTACAATTAGT
                      ____________________________________________________________
consensus GCAGTGGTCACAGGGGAGGAAAGGAAATATTCGGTCACTGCTTTCGACCTTACAATTAGT
 
. : . : . : . : . : . :
rJMSF028E13+ TCTTTGGCCCGAGAGCGGATGGAAGCCCGTGCCTCTGGTGGATTTGATAGAAGGAAATGC
rJMSF045D03+ TCTTTGGCCCGAGAGCGGATGGAAGCCCGTGCCTCTGGTGGATTTGATAGAAGGAAATGC
rJMSF017G18+ TCTTTGGCCCGAGAGCGGATGGAAGCCCGTGCCTCTGGTGGATTTGATAGAAGGAAATGC
rJMSF043J09+ TCTTTGGCCCGAGAGCGGATGGAAGCCCGTGCCTCTGGTGGATTTGATAGAAGGAAATGC
                      ____________________________________________________________
consensus TCTTTGGCCCGAGAGCGGATGGAAGCCCGTGCCTCTGGTGGATTTGATAGAAGGAAATGC
 
. : . : . : . : . : . :
rJMSF028E13+ AGTAAAGAGAGCTTATCAGAAAGCCTTGCTGTATTTGCATCCAGATAAGCTCCAACAAAA
rJMSF045D03+ AGTAAAGAGAGCTTATCAGAAAGCCTTGCTGTATTTGCATCCAGATAAGCTCCAACAAAA
rJMSF017G18+ AGTAAAGAGAGCTTATCAGAAAGCCTTGCTGTATTTGCATCCAGATAAGCTCCAACAAAA
rJMSF043J09+ AGTAAAGAGAGCTTATCAGAAAGCCTTGCTGTATTTGCATCCAGATAAGCTCCAACAAAA
                      ____________________________________________________________
consensus AGTAAAGAGAGCTTATCAGAAAGCCTTGCTGTATTTGCATCCAGATAAGCTCCAACAAAA
 
. : . : . : . : . : . :
rJMSF028E13+ AGGCGCCGCTTCTCATCAAAAATACATTGCAGAGAAAGTCTTTGCCATTCTGCAGGAAGC
rJMSF045D03+ AGGCGCCGCTTCTCATCAAAAATACATTGCAGAGAAAGTCTTTGCCATTCTGCAGGAAGC
rJMSF017G18+ AGGCGCCGCTTCTCATCAAAAATACATTGCAGAGAAAGTCTTTGCCATTCTGCAGGAAGC
rJMSF043J09+ AGGCGCCGCTTCTCATCAAAAATACATTGCAGAGAAAGTCTTTGCCATTCTGCAGGAAGC
                      ____________________________________________________________
consensus AGGCGCCGCTTCTCATCAAAAATACATTGCAGAGAAAGTCTTTGCCATTCTGCAGGAAGC
 
. : . : . : . : . : . :
rJMSF028E13+ ATGGGATCATTTCAATTCGCTTGGTGGGATCTGATCAGAATTCAGAAGCGAAGCACACAA
rJMSF045D03+ ATGGGATCATTTCAATTCGCTTGGTGGGATCTGATCAGAATTCAGAAGCGAAGCACACAA
rJMSF017G18+ ATGGGATCATTTCAATTCGCTTGGTGGGATCTGATCAGAATTCAGAAGCGAAGCACACAA
rJMSF043J09+ ATGGGATCATTTCAATTCGCTTGGTGGGATCTGATCAGAATTCAGAAGCGAAGCACACAA
                      ____________________________________________________________
consensus ATGGGATCATTTCAATTCGCTTGGTGGGATCTGATCAGAATTCAGAAGCGAAGCACACAA
 
. : . : . : . : . : . :
rJMSF028E13+ AAAATGGAATCTCATATATTGCCATGTTACAGTGATAGATACACTTCAAAGTTCAAACTT
rJMSF045D03+ AAAATGGAATCTCATATATTGCCATGTTACAGTGATAGATACACTTCAAAGTTCAAACTT
rJMSF017G18+ AAAATGGAATCTCATATATTGCCATGTTACAGTGATAGATACACTTCAAAGTTCAAACTT
rJMSF043J09+ AAAATGGAATCTCATATATTGCCATGTTACAGTGATAGATACACTTCAAAGTTCAAACTT
                      ____________________________________________________________
consensus AAAATGGAATCTCATATATTGCCATGTTACAGTGATAGATACACTTCAAAGTTCAAACTT
 
. : . : . : . : . : . :
rJMSF028E13+ CAATTCAGACAACCACACAGAAATAATCCCTCTGATCTTATTCTTTTTTT
rJMSF045D03+ CAATTCAGACAACCACACAGAAATAATCCCTCTGATCTTATTCTTTTTTTCCCTGTAAAA
rJMSF017G18+ CAATTCAGACAACCACACAGAAATAATCCCTCTGATCTTATTCTTTTTTTCCCTGTAAAA
rJMSF043J09+ CAATTCAGACAACCACACAGAAATAATCCCTCTGATCTTATTCTTTTTTTCCCTGTAAAA
                      ____________________________________________________________
consensus CAATTCAGACAACCACACAGAAATAATCCCTCTGATCTTATTCTTTTTTTCCCTGTAAAA
 
. : . : . : . : . : . :
rJMSF045D03+ ATTTTATGTTTTATCGACG
rJMSF017G18+ ATTTTATGTTTTATCGACGTGTATGTTGATGAGTTCTTTTGAGATTACACAATACATACA
rJMSF043J09+ ATTTTATGTTTTATCGACGTGTATGTTGATGAGTTCTTTTGAGATTACACAATACATACA
                      ____________________________________________________________
consensus ATTTTATGTTTTATCGACGTGTATGTTGATGAGTTCTTTTGAGATTACACAATACATACA
 
. : . : . : . : . : . :
rJMSF017G18+ TGATACCTATATGCAGCAGGCTTGCTAGCTGTGCTGGAAGCCATTATTAAAC
rJMSF043J09+ TGATACCTATATGCAGCAGGCTTGCTAGCTGTGCTGGAAGCCATTATTAAACCAAGAAAT
                      ____________________________________________________________
consensus TGATACCTATATGCAGCAGGCTTGCTAGCTGTGCTGGAAGCCATTATTAAACCAAGAAAT