clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF017G18 | Sequence | 489 | 000615 (5) | ref|XP_006367308.1| | 7e-26 | PREDICTED: J domain-containing protein required for chloroplast accumulation re | 745 | 011407 (4) | ref|XP_009599410.1| | 3e-66 | PREDICTED: J domain-containing protein required for chloroplast accumulation re |
JMSF028E13 | Sequence | 677 | 000615 (5) | ref|XP_006367308.1| | 6e-44 | PREDICTED: J domain-containing protein required for chloroplast accumulation re | 798 | 011407 (4) | ref|XP_009599410.1| | 1e-80 | PREDICTED: J domain-containing protein required for chloroplast accumulation re |
JMSF043J09 | Sequence | 717 | 000615 (5) | ref|XP_006367308.1| | 5e-46 | PREDICTED: J domain-containing protein required for chloroplast accumulation re | 724 | 011407 (4) | ref|XP_009599410.1| | 4e-68 | PREDICTED: J domain-containing protein required for chloroplast accumulation re |
JMSF045D03 | Sequence | 707 | 000615 (5) | ref|XP_006367308.1| | 1e-43 | PREDICTED: J domain-containing protein required for chloroplast accumulation re | 696 | 011407 (4) | ref|XP_009599410.1| | 9e-69 | PREDICTED: J domain-containing protein required for chloroplast accumulation re |
This contig is upended
. : . : . : . : . : . :
rJMSF028E13+ ACTTCCATGCAGT
____________________________________________________________
consensus ACTTCCATGCAGT
. : . : . : . : . : . :
rJMSF028E13+ GGAAAAAGAAACGGGTGACAGTNCAAGACAGACGAACGAGGAAGTGCAAATTCCTAGTAT
____________________________________________________________
consensus GGAAAAAGAAACGGGTGACAGTNCAAGACAGACGAACGAGGAAGTGCAAATTCCTAGTAT
. : . : . : . : . : . :
rJMSF028E13+ GAATAAAACAGCAGCAGATGCTTTTCAAAGGGTGGAGCAAATCCTTAACACGAAGGAGAA
____________________________________________________________
consensus GAATAAAACAGCAGCAGATGCTTTTCAAAGGGTGGAGCAAATCCTTAACACGAAGGAGAA
. : . : . : . : . : . :
rJMSF028E13+ AACAAATAAACATTCTTATAAGAAACCCTCGATTCATCAAACTACCACTCATCCTGCTGA
rJMSF045D03+ CATTCTTATAAGAAACCCTCGATTCATCAAACTACCACTCATCCTGCTGA
rJMSF017G18+ CCTCGATTCATCAAACTACCACTCATCCTGCTGA
rJMSF043J09+ CTGA
____________________________________________________________
consensus AACAAATAAACATTCTTATAAGAAACCCTCGATTCATCAAACTACCACTCATCCTGCTGA
. : . : . : . : . : . :
rJMSF028E13+ TCAGAACAATGCTTCATCATTTTCTGAACCTATTCGAAACGGTCTGAGGCGTTCAGTAGG
rJMSF045D03+ TCAGAACAATGCTTCATCATTTTCTGAACCTATTCGAAACGGTCTGAGGCGTTCAGTAGG
rJMSF017G18+ TCAGAACAATGCTTCATCA-TTTCTGAACCTATTCGAAACGGTCTGAGGCGTTCAGTAGG
rJMSF043J09+ TCAGAACAATGCTTCATCATTTTCTGAACCTATTCGAAACGGTCTGAGGCGTTCAGTAGG
____________________________________________________________
consensus TCAGAACAATGCTTCATCATTTTCTGAACCTATTCGAAACGGTCTGAGGCGTTCAGTAGG
. : . : . : . : . : . :
rJMSF028E13+ AAGTGCAGATGATCTCTTCCATGGAAGCTTTGTGGTAGAAGAGTTATATGAAGATGAGAG
rJMSF045D03+ AAGTGCAGATGATCTCTTCCATGGAAGCTTTGTGGTAGAAGAGTTATATGAAGATGAGAG
rJMSF017G18+ AAGTGCAGATGATCTCTTCCATGGAAGCTTTGTGGTAGAAGAGTTATATGAAGATGAGAG
rJMSF043J09+ AAGTGCAGATGATCTCTTCCATGGAAGCTTTGTGGTAGAAGAGTTATATGAAGATGAGAG
____________________________________________________________
consensus AAGTGCAGATGATCTCTTCCATGGAAGCTTTGTGGTAGAAGAGTTATATGAAGATGAGAG
. : . : . : . : . : . :
rJMSF028E13+ CAAACCATTACAGAAGAGTGGTGAATCTCACGACATGAAAGCTTCAGATGCAAAGATTCA
rJMSF045D03+ CAAACCATTACAGAAGAGTGGTGAATCTCACGACATGAAAGCTTCAGATGCAAAGATTCA
rJMSF017G18+ CAAACCATTACAGAAGAGTGGTGAATCTCACGACATGAAAGCTTCAGATGCAAAGATTCA
rJMSF043J09+ CAAACCATTACAGAAGAGTGGTGAATCTCACGACATGAAAGCTTCAGATGCAAAGATTCA
____________________________________________________________
consensus CAAACCATTACAGAAGAGTGGTGAATCTCACGACATGAAAGCTTCAGATGCAAAGATTCA
. : . : . : . : . : . :
rJMSF028E13+ GCAGTGGTCACAGGGGAGGAAAGGAAATATTCGGTCACTGCTTTCGACCTTACAATTAGT
rJMSF045D03+ GCAGTGGTCACAGGGGAGGAAAGGAAATATTCGGTCACTGCTTTCGACCTTACAATTAGT
rJMSF017G18+ GCAGTGGTCACAGGGGAGGAAAGGAAATATTCGGTCACTGCTTTCGACCTTACAATTAGT
rJMSF043J09+ GCAGTGGTCACAGGGGAGGAAAGGAAATATTCGGTCACTGCTTTCGACCTTACAATTAGT
____________________________________________________________
consensus GCAGTGGTCACAGGGGAGGAAAGGAAATATTCGGTCACTGCTTTCGACCTTACAATTAGT
. : . : . : . : . : . :
rJMSF028E13+ TCTTTGGCCCGAGAGCGGATGGAAGCCCGTGCCTCTGGTGGATTTGATAGAAGGAAATGC
rJMSF045D03+ TCTTTGGCCCGAGAGCGGATGGAAGCCCGTGCCTCTGGTGGATTTGATAGAAGGAAATGC
rJMSF017G18+ TCTTTGGCCCGAGAGCGGATGGAAGCCCGTGCCTCTGGTGGATTTGATAGAAGGAAATGC
rJMSF043J09+ TCTTTGGCCCGAGAGCGGATGGAAGCCCGTGCCTCTGGTGGATTTGATAGAAGGAAATGC
____________________________________________________________
consensus TCTTTGGCCCGAGAGCGGATGGAAGCCCGTGCCTCTGGTGGATTTGATAGAAGGAAATGC
. : . : . : . : . : . :
rJMSF028E13+ AGTAAAGAGAGCTTATCAGAAAGCCTTGCTGTATTTGCATCCAGATAAGCTCCAACAAAA
rJMSF045D03+ AGTAAAGAGAGCTTATCAGAAAGCCTTGCTGTATTTGCATCCAGATAAGCTCCAACAAAA
rJMSF017G18+ AGTAAAGAGAGCTTATCAGAAAGCCTTGCTGTATTTGCATCCAGATAAGCTCCAACAAAA
rJMSF043J09+ AGTAAAGAGAGCTTATCAGAAAGCCTTGCTGTATTTGCATCCAGATAAGCTCCAACAAAA
____________________________________________________________
consensus AGTAAAGAGAGCTTATCAGAAAGCCTTGCTGTATTTGCATCCAGATAAGCTCCAACAAAA
. : . : . : . : . : . :
rJMSF028E13+ AGGCGCCGCTTCTCATCAAAAATACATTGCAGAGAAAGTCTTTGCCATTCTGCAGGAAGC
rJMSF045D03+ AGGCGCCGCTTCTCATCAAAAATACATTGCAGAGAAAGTCTTTGCCATTCTGCAGGAAGC
rJMSF017G18+ AGGCGCCGCTTCTCATCAAAAATACATTGCAGAGAAAGTCTTTGCCATTCTGCAGGAAGC
rJMSF043J09+ AGGCGCCGCTTCTCATCAAAAATACATTGCAGAGAAAGTCTTTGCCATTCTGCAGGAAGC
____________________________________________________________
consensus AGGCGCCGCTTCTCATCAAAAATACATTGCAGAGAAAGTCTTTGCCATTCTGCAGGAAGC
. : . : . : . : . : . :
rJMSF028E13+ ATGGGATCATTTCAATTCGCTTGGTGGGATCTGATCAGAATTCAGAAGCGAAGCACACAA
rJMSF045D03+ ATGGGATCATTTCAATTCGCTTGGTGGGATCTGATCAGAATTCAGAAGCGAAGCACACAA
rJMSF017G18+ ATGGGATCATTTCAATTCGCTTGGTGGGATCTGATCAGAATTCAGAAGCGAAGCACACAA
rJMSF043J09+ ATGGGATCATTTCAATTCGCTTGGTGGGATCTGATCAGAATTCAGAAGCGAAGCACACAA
____________________________________________________________
consensus ATGGGATCATTTCAATTCGCTTGGTGGGATCTGATCAGAATTCAGAAGCGAAGCACACAA
. : . : . : . : . : . :
rJMSF028E13+ AAAATGGAATCTCATATATTGCCATGTTACAGTGATAGATACACTTCAAAGTTCAAACTT
rJMSF045D03+ AAAATGGAATCTCATATATTGCCATGTTACAGTGATAGATACACTTCAAAGTTCAAACTT
rJMSF017G18+ AAAATGGAATCTCATATATTGCCATGTTACAGTGATAGATACACTTCAAAGTTCAAACTT
rJMSF043J09+ AAAATGGAATCTCATATATTGCCATGTTACAGTGATAGATACACTTCAAAGTTCAAACTT
____________________________________________________________
consensus AAAATGGAATCTCATATATTGCCATGTTACAGTGATAGATACACTTCAAAGTTCAAACTT
. : . : . : . : . : . :
rJMSF028E13+ CAATTCAGACAACCACACAGAAATAATCCCTCTGATCTTATTCTTTTTTT
rJMSF045D03+ CAATTCAGACAACCACACAGAAATAATCCCTCTGATCTTATTCTTTTTTTCCCTGTAAAA
rJMSF017G18+ CAATTCAGACAACCACACAGAAATAATCCCTCTGATCTTATTCTTTTTTTCCCTGTAAAA
rJMSF043J09+ CAATTCAGACAACCACACAGAAATAATCCCTCTGATCTTATTCTTTTTTTCCCTGTAAAA
____________________________________________________________
consensus CAATTCAGACAACCACACAGAAATAATCCCTCTGATCTTATTCTTTTTTTCCCTGTAAAA
. : . : . : . : . : . :
rJMSF045D03+ ATTTTATGTTTTATCGACG
rJMSF017G18+ ATTTTATGTTTTATCGACGTGTATGTTGATGAGTTCTTTTGAGATTACACAATACATACA
rJMSF043J09+ ATTTTATGTTTTATCGACGTGTATGTTGATGAGTTCTTTTGAGATTACACAATACATACA
____________________________________________________________
consensus ATTTTATGTTTTATCGACGTGTATGTTGATGAGTTCTTTTGAGATTACACAATACATACA
. : . : . : . : . : . :
rJMSF017G18+ TGATACCTATATGCAGCAGGCTTGCTAGCTGTGCTGGAAGCCATTATTAAAC
rJMSF043J09+ TGATACCTATATGCAGCAGGCTTGCTAGCTGTGCTGGAAGCCATTATTAAACCAAGAAAT
____________________________________________________________
consensus TGATACCTATATGCAGCAGGCTTGCTAGCTGTGCTGGAAGCCATTATTAAACCAAGAAAT