Contig 011406:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011C20Sequence302013518 (2)749011406 (2)ref|XP_009797484.1|3e-69PREDICTED: uncharacterized protein LOC104243907 isoform X3 [Nicotiana sylvestri
JMSF043E15Sequence775013518 (2)ref|XP_009603414.1|6e-62PREDICTED: YTH domain-containing family protein 2-like isoform X1 [Nicotiana to800011406 (2)ref|XP_009797484.1|2e-56PREDICTED: uncharacterized protein LOC104243907 isoform X3 [Nicotiana sylvestri

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF043E15+ GTCTTTTTGCTTTTTCTCTG
                      ____________________________________________________________
consensus GTCTTTTTGCTTTTTCTCTG
 
. : . : . : . : . : . :
rJMSF011C20+ TTTGTTGGCCTTGCCGAGATGGTTGG-TCGTGTCGATTATG
rJMSF043E15+ TTAATGCAAAGTGGACAGTTTTGTTGGCCTTGCCGAGATGGTTGGTTCGTGTCGATTATG
                      ____________________________________________________________
consensus TTAATGCAAAGTGGACAGTTTTGTTGGCCTTGCCGAGATGGTTGGTTCGTGTCGATTATG
 
. : . : . : . : . : . :
rJMSF011C20+ AC-AAAACTGTTGAATATTGGCAA-CAAGACAAGTGGAATGGGTGCTTCCCTACCAAGTG
rJMSF043E15+ ACAAAAACTGTTGAATATTGGCAACCAAGACAAGTGGAATGGGTGCTTCCCTACCAAGTG
                      ____________________________________________________________
consensus ACAAAAACTGTTGAATATTGGCAACCAAGACAAGTGGAATGGGTGCTTCCCTACCAAGTG
 
. : . : . : . : . : . :
rJMSF011C20+ GCATATTATAAAAGATGTACCTAATAGCATGCTGAGGCACATCACTCTAGAGAATAATGA
rJMSF043E15+ GCATATTATAAAAGATGTACCTAATAGCATGCTGAGGCACATCACTCTAGAGAATAATGA
                      ____________________________________________________________
consensus GCATATTATAAAAGATGTACCTAATAGCATGCTGAGGCACATCACTCTAGAGAATAATGA
 
. : . : . : . : . : . :
rJMSF011C20+ GAATAAGCCCGTAACCAACAGCAGAGATACTCAGGAGGTCAGCTTTGAGCATGGTATTGA
rJMSF043E15+ GAATAAGCCCGTAACCAACAGCAGAGATACTCAGGAGGTCAGCTTTGAGCATGGTATTGA
                      ____________________________________________________________
consensus GAATAAGCCCGTAACCAACAGCAGAGATACTCAGGAGGTCAGCTTTGAGCATGGTATTGA
 
. : . : . : . : . : . :
rJMSF011C20+ CGTATTGAAAATACTGAAAGGACATTCCAGTAAGACGAGCATTTTAGATGATTTCGAGTT
rJMSF043E15+ CGTATTGAAAATACTGAAAGGACATTCCAGTAAGACGAGCATTTTAGATGATTTCGAGTT
                      ____________________________________________________________
consensus CGTATTGAAAATACTGAAAGGACATTCCAGTAAGACGAGCATTTTAGATGATTTCGAGTT
 
. : . : . : . : . : . :
rJMSF011C20+ TTATGAAGGACGCCAGAAGATAATGCAAGAGAGAAAGGCTAAGCAGCGCCTATTGGAAAA
rJMSF043E15+ TTATGAAGGACGCCAGAAGATAATGCAAGAGAGAAAGGCTAAGCAGCGCCTATTGGAAAA
                      ____________________________________________________________
consensus TTATGAAGGACGCCAGAAGATAATGCAAGAGAGAAAGGCTAAGCAGCGCCTATTGGAAAA
 
. : . : . : . : . : . :
rJMSF011C20+ ACAGGCCGGAAATGCAAAACCATTTATCGTTTTATCTTCACAGGAAACAGACAAAACTGA
rJMSF043E15+ ACAGGCCGGAAATGCAAAACCATTTATCGTTTTATCTTCACAGGAAACAGACAAAACTGA
                      ____________________________________________________________
consensus ACAGGCCGGAAATGCAAAACCATTTATCGTTTTATCTTCACAGGAAACAGACAAAACTGA
 
. : . : . : . : . : . :
rJMSF011C20+ GACGACAGATAAAAACATCTCCGCTAAACCAGCAGATTCTGATGGTTCAGCCGCACCTGA
rJMSF043E15+ GACGACAGATAAAAACATCTCCGCTAAACCAGCAGATTCTGATGGTTCAGCCGCACCTGA
                      ____________________________________________________________
consensus GACGACAGATAAAAACATCTCCGCTAAACCAGCAGATTCTGATGGTTCAGCCGCACCTGA
 
. : . : . : . : . : . :
rJMSF011C20+ GACCGCCAAGGCTGATGTAGGAGTGATTCCTCATGGCGAAAAAGTGACATTTGCAGCGGT
rJMSF043E15+ GACCGCCAAGGCTGATGTAGGAGTGATTCCTCATGGCGAAAAAGTGACATTTGCAGCGGT
                      ____________________________________________________________
consensus GACCGCCAAGGCTGATGTAGGAGTGATTCCTCATGGCGAAAAAGTGACATTTGCAGCGGT
 
. : . : . : . : . : . :
rJMSF011C20+ GCTCTCCGGTGGGGTTGGAAATGCTTGTTAAGTTCTTTTGCAACAAGTGGGGCAATTTAT
rJMSF043E15+ GCTCTCCGGTGGGGTTGGAAATGCTTGTTAAGTTCTTTTGCAACAAGTGGGGCAATTTAT
                      ____________________________________________________________
consensus GCTCTCCGGTGGGGTTGGAAATGCTTGTTAAGTTCTTTTGCAACAAGTGGGGCAATTTAT
 
. : . : . : . : . : . :
rJMSF011C20+ GGGAGTTGCAGAGTTGGTCTAGTGTGTTCAAAATACACAATAAAGTTTGATTTGTTAGAT
rJMSF043E15+ GGGAGTTGCAGAGTTGGTCTAGTGTGTTCAAAATACACAATAAAGTTTGATTTGTTAGAT
                      ____________________________________________________________
consensus GGGAGTTGCAGAGTTGGTCTAGTGTGTTCAAAATACACAATAAAGTTTGATTTGTTAGAT
 
. : . : . : . : . : . :
rJMSF011C20+ GACATGGTTGATGTGGCTTTCTTTTTTCTCTTTTTCTCCCCAAGAACAATAATATAAATA
rJMSF043E15+ GACATGGTTGATGTGGCTTTCTTTTTTCTCTTTTTCTCCCCAAGAACAATAATATAAATA
                      ____________________________________________________________
consensus GACATGGTTGATGTGGCTTTCTTTTTTCTCTTTTTCTCCCCAAGAACAATAATATAAATA
 
. : . : . : . : . : . :
rJMSF011C20+ GAATAGAATGCACTGTTCTCAAAATAGGCAGCATGATGT
rJMSF043E15+ GAATAGAATGCACTGTTCTCAAAATAGGCAGCATGATGTTGACTTGGACTGCTAAGAATT
                      ____________________________________________________________
consensus GAATAGAATGCACTGTTCTCAAAATAGGCAGCATGATGTTGACTTGGACTGCTAAGAATT