Contig 011406:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF043E15+                                                  GTCTTTTTGCTTTTTCTCTG
                      ____________________________________________________________
consensus                                                     GTCTTTTTGCTTTTTCTCTG
 
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rJMSF011C20+                             TTTGTTGGCCTTGCCGAGATGGTTGG-TCGTGTCGATTATG
rJMSF043E15+          TTAATGCAAAGTGGACAGTTTTGTTGGCCTTGCCGAGATGGTTGGTTCGTGTCGATTATG
                      ____________________________________________________________
consensus             TTAATGCAAAGTGGACAGTTTTGTTGGCCTTGCCGAGATGGTTGGTTCGTGTCGATTATG
 
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rJMSF011C20+          AC-AAAACTGTTGAATATTGGCAA-CAAGACAAGTGGAATGGGTGCTTCCCTACCAAGTG
rJMSF043E15+          ACAAAAACTGTTGAATATTGGCAACCAAGACAAGTGGAATGGGTGCTTCCCTACCAAGTG
                      ____________________________________________________________
consensus             ACAAAAACTGTTGAATATTGGCAACCAAGACAAGTGGAATGGGTGCTTCCCTACCAAGTG
 
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rJMSF011C20+          GCATATTATAAAAGATGTACCTAATAGCATGCTGAGGCACATCACTCTAGAGAATAATGA
rJMSF043E15+          GCATATTATAAAAGATGTACCTAATAGCATGCTGAGGCACATCACTCTAGAGAATAATGA
                      ____________________________________________________________
consensus             GCATATTATAAAAGATGTACCTAATAGCATGCTGAGGCACATCACTCTAGAGAATAATGA
 
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rJMSF011C20+          GAATAAGCCCGTAACCAACAGCAGAGATACTCAGGAGGTCAGCTTTGAGCATGGTATTGA
rJMSF043E15+          GAATAAGCCCGTAACCAACAGCAGAGATACTCAGGAGGTCAGCTTTGAGCATGGTATTGA
                      ____________________________________________________________
consensus             GAATAAGCCCGTAACCAACAGCAGAGATACTCAGGAGGTCAGCTTTGAGCATGGTATTGA
 
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rJMSF011C20+          CGTATTGAAAATACTGAAAGGACATTCCAGTAAGACGAGCATTTTAGATGATTTCGAGTT
rJMSF043E15+          CGTATTGAAAATACTGAAAGGACATTCCAGTAAGACGAGCATTTTAGATGATTTCGAGTT
                      ____________________________________________________________
consensus             CGTATTGAAAATACTGAAAGGACATTCCAGTAAGACGAGCATTTTAGATGATTTCGAGTT
 
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rJMSF011C20+          TTATGAAGGACGCCAGAAGATAATGCAAGAGAGAAAGGCTAAGCAGCGCCTATTGGAAAA
rJMSF043E15+          TTATGAAGGACGCCAGAAGATAATGCAAGAGAGAAAGGCTAAGCAGCGCCTATTGGAAAA
                      ____________________________________________________________
consensus             TTATGAAGGACGCCAGAAGATAATGCAAGAGAGAAAGGCTAAGCAGCGCCTATTGGAAAA
 
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rJMSF011C20+          ACAGGCCGGAAATGCAAAACCATTTATCGTTTTATCTTCACAGGAAACAGACAAAACTGA
rJMSF043E15+          ACAGGCCGGAAATGCAAAACCATTTATCGTTTTATCTTCACAGGAAACAGACAAAACTGA
                      ____________________________________________________________
consensus             ACAGGCCGGAAATGCAAAACCATTTATCGTTTTATCTTCACAGGAAACAGACAAAACTGA
 
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rJMSF011C20+          GACGACAGATAAAAACATCTCCGCTAAACCAGCAGATTCTGATGGTTCAGCCGCACCTGA
rJMSF043E15+          GACGACAGATAAAAACATCTCCGCTAAACCAGCAGATTCTGATGGTTCAGCCGCACCTGA
                      ____________________________________________________________
consensus             GACGACAGATAAAAACATCTCCGCTAAACCAGCAGATTCTGATGGTTCAGCCGCACCTGA
 
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rJMSF011C20+          GACCGCCAAGGCTGATGTAGGAGTGATTCCTCATGGCGAAAAAGTGACATTTGCAGCGGT
rJMSF043E15+          GACCGCCAAGGCTGATGTAGGAGTGATTCCTCATGGCGAAAAAGTGACATTTGCAGCGGT
                      ____________________________________________________________
consensus             GACCGCCAAGGCTGATGTAGGAGTGATTCCTCATGGCGAAAAAGTGACATTTGCAGCGGT
 
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rJMSF011C20+          GCTCTCCGGTGGGGTTGGAAATGCTTGTTAAGTTCTTTTGCAACAAGTGGGGCAATTTAT
rJMSF043E15+          GCTCTCCGGTGGGGTTGGAAATGCTTGTTAAGTTCTTTTGCAACAAGTGGGGCAATTTAT
                      ____________________________________________________________
consensus             GCTCTCCGGTGGGGTTGGAAATGCTTGTTAAGTTCTTTTGCAACAAGTGGGGCAATTTAT
 
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rJMSF011C20+          GGGAGTTGCAGAGTTGGTCTAGTGTGTTCAAAATACACAATAAAGTTTGATTTGTTAGAT
rJMSF043E15+          GGGAGTTGCAGAGTTGGTCTAGTGTGTTCAAAATACACAATAAAGTTTGATTTGTTAGAT
                      ____________________________________________________________
consensus             GGGAGTTGCAGAGTTGGTCTAGTGTGTTCAAAATACACAATAAAGTTTGATTTGTTAGAT
 
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rJMSF011C20+          GACATGGTTGATGTGGCTTTCTTTTTTCTCTTTTTCTCCCCAAGAACAATAATATAAATA
rJMSF043E15+          GACATGGTTGATGTGGCTTTCTTTTTTCTCTTTTTCTCCCCAAGAACAATAATATAAATA
                      ____________________________________________________________
consensus             GACATGGTTGATGTGGCTTTCTTTTTTCTCTTTTTCTCCCCAAGAACAATAATATAAATA
 
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rJMSF011C20+          GAATAGAATGCACTGTTCTCAAAATAGGCAGCATGATGT                     
rJMSF043E15+          GAATAGAATGCACTGTTCTCAAAATAGGCAGCATGATGTTGACTTGGACTGCTAAGAATT
                      ____________________________________________________________
consensus             GAATAGAATGCACTGTTCTCAAAATAGGCAGCATGATGTTGACTTGGACTGCTAAGAATT