| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF014L13 | Sequence | 198 | 005018 (3) | 789 | 011404 (3) | ref|XP_009759751.1| | 8e-101 | PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Nicotiana sylves | |||
| JMSF014P01 | Sequence | 389 | 005018 (3) | ref|XP_008218434.1| | 2e-04 | PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Prunus mume] | 757 | 011404 (3) | ref|XP_009759751.1| | 1e-88 | PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Nicotiana sylves |
| JMSF042P23 | Sequence | 601 | 005018 (3) | ref|XP_011084648.1| | 2e-37 | PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Sesamum indicum] | 721 | 011404 (3) | ref|XP_009759751.1| | 8e-89 | PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Nicotiana sylves |
This contig is upended
. : . : . : . : . : . :
rJMSF014L13+ CTGGTTATTCGCGTTTCCAGGGATCAACACTCTGGACTTTTCTGG
____________________________________________________________
consensus CTGGTTATTCGCGTTTCCAGGGATCAACACTCTGGACTTTTCTGG
. : . : . : . : . : . :
rJMSF014L13+ GAACAAGTTCTCTGGCTATATCCCCGATGTTAACTCTAACACTAGTTTGAATTTCAACAA
rJMSF014P01+ TCCCCGATGTTAACTCTAACACTAGTTTGAATTTCAACAA
rJMSF042P23+ A
____________________________________________________________
consensus GAACAAGTTCTCTGGCTATATCCCCGATGTTAACTCTAACACTAGTTTGAATTTCAACAA
. : . : . : . : . : . :
rJMSF014L13+ CAATGATGTTGGGAGACGCGTTCTGATTTCATTCCGCGAGCTAAGTATAAAGACTTTTGT
rJMSF014P01+ CAATGATGTTGGGAGACGCGTTCTGATTTCATTCCGCGAGCTAAGTATAAAGACTTTTGT
rJMSF042P23+ CAATGATGTTGGGAGACGCGTTCTGATTTCATTCCGCGAGCTAAGTATAAAGACTTTTGT
____________________________________________________________
consensus CAATGATGTTGGGAGACGCGTTCTGATTTCATTCCGCGAGCTAAGTATAAAGACTTTTGT
. : . : . : . : . : . :
rJMSF014L13+ GATTGTGGCTGACAAAACTGAGTTGAGCTTCAACTACGACCTCTCAACCGTAACTGGAAT
rJMSF014P01+ GATTGTGGCTGACAAAACTGAGTTGAGCTTCAACTACGACCTCTCAACCGTAACTGGAAT
rJMSF042P23+ GATTGTGGCTGACAAAACTGAGTTGAGCTTCAACTACGACCTCTCAACCGTAACTGGAAT
____________________________________________________________
consensus GATTGTGGCTGACAAAACTGAGTTGAGCTTCAACTACGACCTCTCAACCGTAACTGGAAT
. : . : . : . : . : . :
rJMSF014L13+ TGATCTCTCGGGTAATTTGCTGCACGGTGAAATCCCCGAGAGTCTGTTCGGCCTGCGTGG
rJMSF014P01+ TGATCTCTCGGGTAATTTGCTGCACGGTGAAATCCCCGAGAGTCTGTTCGGCCTGCGTGG
rJMSF042P23+ TGATCTCTCGGGTAATTTGCTGCACGGTGAAATCCCCGAGAGTCTGTTCGGCCTGCGTGG
____________________________________________________________
consensus TGATCTCTCGGGTAATTTGCTGCACGGTGAAATCCCCGAGAGTCTGTTCGGCCTGCGTGG
. : . : . : . : . : . :
rJMSF014L13+ TTTGGAGTACTTGAATTTGTCACGTAATTTTCTTGATGGTCAAGTTCCGGGAAGCTTAGG
rJMSF014P01+ TTTGGAGTACTTGAATTTGTCACGTAATTTTCTTGATGGTCAAGTTCCGGGAAGCTTAGG
rJMSF042P23+ TTTGGAGTACTTGAATTTGTCACGTAATTTTCTTGATGGTCAAGTTCCGGGAAGCTTAGG
____________________________________________________________
consensus TTTGGAGTACTTGAATTTGTCACGTAATTTTCTTGATGGTCAAGTTCCGGGAAGCTTAGG
. : . : . : . : . : . :
rJMSF014L13+ GAGGATGCAGAATTTAAAGGCCCTGGATTTGTCACACAATTCTTTATCTGGTCAAATTCC
rJMSF014P01+ GAGGATGCAGAATTTAAAGGCCCTGGATTTGTCACACAATTCTTTATCTGGTCAAATTCC
rJMSF042P23+ GAGGATGCAGAATTTAAAGGCCCTGGATTTGTCACACAATTCTTTATCTGGTCAAATTCC
____________________________________________________________
consensus GAGGATGCAGAATTTAAAGGCCCTGGATTTGTCACACAATTCTTTATCTGGTCAAATTCC
. : . : . : . : . : . :
rJMSF014L13+ CGAAAACATATCCAGCCTCGGGAATTTGACGATTTTGAACCTGTCATTTAACTGTTTCTC
rJMSF014P01+ CGAAAACATATCCAGCCTCGGGAATTTGACGATTTTGAACCTGTCATTTAACTGTTTCTC
rJMSF042P23+ CGAAAACATATCCAGCCTCGGGAATTTGACGATTTTGAACCTGTCATTTAACTGTTTCTC
____________________________________________________________
consensus CGAAAACATATCCAGCCTCGGGAATTTGACGATTTTGAACCTGTCATTTAACTGTTTCTC
. : . : . : . : . : . :
rJMSF014L13+ TGGAATTGTTCCTCGTAAGCAGGGGTATTGGAGATTCCCGGGAGCATTTGCTGGCAACCC
rJMSF014P01+ TGGAATTGTTCCTCGTAAGCAGGGGTATTGGAGATTCCCGGGAGCATTTGCTGGCAACCC
rJMSF042P23+ TGGAATTGTTCCTCGTAAGCAGGGGTATTGGAGATTCCCGGGAGCATTTGCTGGCAACCC
____________________________________________________________
consensus TGGAATTGTTCCTCGTAAGCAGGGGTATTGGAGATTCCCGGGAGCATTTGCTGGCAACCC
. : . : . : . : . : . :
rJMSF014L13+ CGACCTGTGTGTGGAGTCGCCCAGTGATGGGTGTAGGACGAAAAACTTTGCAGTGAAACA
rJMSF014P01+ CGACCTGTGTGTGGAGTCGCCCAGTGATGGGTGTAGGACGAAAAACTTTGCAGTGAAACA
rJMSF042P23+ CGACCTGTGTGTGGAGTCGCCCAGTGATGGGTGTAGGACGAAAAACTTTGCAGTGAAACA
____________________________________________________________
consensus CGACCTGTGTGTGGAGTCGCCCAGTGATGGGTGTAGGACGAAAAACTTTGCAGTGAAACA
. : . : . : . : . : . :
rJMSF014L13+ CGGGAGAACGTTTGAAGACATGGATGACGGACCAATCTCGGTTTGGGTCTTCTGCATTAG
rJMSF014P01+ CGGGAGAACGTTTGAAGACATGGATGACGGACCAATCTCGGTTTGGGTCTTCTGCATTAG
rJMSF042P23+ CGGGAGAACGTTTGAAGACATGGATGACGGACCAATCTCGGTTTGGGTCTTCTGCATTAG
____________________________________________________________
consensus CGGGAGAACGTTTGAAGACATGGATGACGGACCAATCTCGGTTTGGGTCTTCTGCATTAG
. : . : . : . : . : . :
rJMSF014L13+ TGCTTTTGTAAGTTTTTACGGTTGTGTCATCGCCCTTTTCTGTTCAGCTCGAACGAGAAA
rJMSF014P01+ TGCTTTTGTAAGTTTTTACGGTTGTGTCATCGCCCTTTTCTGTTCAGCTCGAACGAGAAA
rJMSF042P23+ TGCTTTTGTAAGTTTTTACGGTTGTGTCATCGCCCTTTTCTGTTCAGCTCGAACGAGAAA
____________________________________________________________
consensus TGCTTTTGTAAGTTTTTACGGTTGTGTCATCGCCCTTTTCTGTTCAGCTCGAACGAGAAA
. : . : . : . : . : . :
rJMSF014L13+ CTACATTCTGCAGACAAAAATCTAATGTATTACACGCGATGGGAATGGTAACTTTCGCTG
rJMSF014P01+ CTACATTCTGCAGACAAAAATCTAATGTATTACACGCGATGGGAATGGTAACTTTCGCTG
rJMSF042P23+ CTACATTCTGCAGACAAAAATCTAATGTATTACACGCGATGGGAATGGTAACTTTCGCTG
____________________________________________________________
consensus CTACATTCTGCAGACAAAAATCTAATGTATTACACGCGATGGGAATGGTAACTTTCGCTG
. : . : . : . : . : . :
rJMSF014L13+ TACAGTAACTTAATTCTGATATCT
rJMSF014P01+ TACAGTAACTTAATTCTGATATCT
rJMSF042P23+ TACAGTAACTTAATTCTGATATCTAATTTGCACTTCTTGCTTCATCAAGTATAACCCCTG
____________________________________________________________
consensus TACAGTAACTTAATTCTGATATCTAATTTGCACTTCTTGCTTCATCAAGTATAACCCCTG