Contig 011403:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF042M09Sequence762011403 (2)ref|XP_009759067.1|5e-139PREDICTED: ABC transporter I family member 20 [Nicotiana sylvestris] ref|XP_0097699011403 (2)ref|XP_009587957.1|4e-67PREDICTED: ABC transporter I family member 20 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF042M09-                                                        GGATTTCCAAACACC
                      ____________________________________________________________
consensus                                                          GGATTTCCAAACACC
 
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JMSF042M09-           TAACTCCATTCCCTTTCCTTCCTTTTCCGTCTCAATAGTTGCAGAGAAAGGCTGAAATCG
                      ____________________________________________________________
consensus             TAACTCCATTCCCTTTCCTTCCTTTTCCGTCTCAATAGTTGCAGAGAAAGGCTGAAATCG
 
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JMSF042M09-           ATGGCGGTGAAGGAAGAGAGGAAGCCGTCAGTGGAGATCAGCAAGTTGAGGTTTACCTAT
                      ____________________________________________________________
consensus             ATGGCGGTGAAGGAAGAGAGGAAGCCGTCAGTGGAGATCAGCAAGTTGAGGTTTACCTAT
 
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JMSF042M09-           CCGGGAATCGACGGTCATCCGCCGCCTGGATCCACTCCACTCATCGATGATTTCTCTCTA
                      ____________________________________________________________
consensus             CCGGGAATCGACGGTCATCCGCCGCCTGGATCCACTCCACTCATCGATGATTTCTCTCTA
 
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JMSF042M09-           ACTCTATTTCCCGGCGACCGCTATCTTCTCGTCGGATCTAATGGCGCAGGGAAGACGACT
                      ____________________________________________________________
consensus             ACTCTATTTCCCGGCGACCGCTATCTTCTCGTCGGATCTAATGGCGCAGGGAAGACGACT
 
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JMSF042M09-           ATTCTCAAGATTTTGGGAGGGAAGCATATGGTGGAACCAGATATGGTTAGAGTTTTAGGA
                      ____________________________________________________________
consensus             ATTCTCAAGATTTTGGGAGGGAAGCATATGGTGGAACCAGATATGGTTAGAGTTTTAGGA
 
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JMSF042M09-           CGATCTGCATTTCATGACACGGCCTTGACGGCTTCTGGCGACCTCTGCTACCTTGGGGGA
                      ____________________________________________________________
consensus             CGATCTGCATTTCATGACACGGCCTTGACGGCTTCTGGCGACCTCTGCTACCTTGGGGGA
 
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JMSF042M09-           GAGTGGAGGAGAGAAGTTGCTTTTGCTGGGTTTGAGGTGCCTATTCAAATGGATGTCTCT
                      ____________________________________________________________
consensus             GAGTGGAGGAGAGAAGTTGCTTTTGCTGGGTTTGAGGTGCCTATTCAAATGGATGTCTCT
 
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JMSF042M09-           GCTGAGAAAATGATATTTGGGGTAGCAAGTGTCAATCCCCAAAGACGAGATGAATTAATT
                      ____________________________________________________________
consensus             GCTGAGAAAATGATATTTGGGGTAGCAAGTGTCAATCCCCAAAGACGAGATGAATTAATT
 
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JMSF042M09-           AAGGTATTGGGTATTGATCTGTCTTGGAGACTGCACAAAACATCTGATGGTCAAAAGAGG
                      ____________________________________________________________
consensus             AAGGTATTGGGTATTGATCTGTCTTGGAGACTGCACAAAACATCTGATGGTCAAAAGAGG
 
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JMSF042M09-           AGGGTACAAATTTGTATGGGTCTTTTGAAACCATTCACGGTCCTCCTCCTTGATGAGATT
rJMSF042M09+                               CTTTTGAAACCATTCACGGTCCTCCTCCTTGATGAGATT
                      ____________________________________________________________
consensus             AGGGTACAAATTTGTATGGGTCTTTTGAAACCATTCACGGTCCTCCTCCTTGATGAGATT
 
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JMSF042M09-           ACTGTTGACCTAGATGTGCTTGCAAGGGCTGACCTTTTAAGATTTCTGAAGAAAGAATGT
rJMSF042M09+          ACTGTTGACCTAGATGTGCTTGCAAGGGCTGACCTTTTAAGATTTCTGAAGAAAGAATGT
                      ____________________________________________________________
consensus             ACTGTTGACCTAGATGTGCTTGCAAGGGCTGACCTTTTAAGATTTCTGAAGAAAGAATGT
 
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JMSF042M09-           GAAGACCAAGGAGCAACAATAATTTATGCCACACACATCTTTGACGGTCTTGAAGATTGG
rJMSF042M09+          GAAGACCAAGGAGCAACAATAATTTATGCCACACACATCTTTGACGGTCTTGAAGATTGG
                      ____________________________________________________________
consensus             GAAGACCAAGGAGCAACAATAATTTATGCCACACACATCTTTGACGGTCTTGAAGATTGG
 
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JMSF042M09-           CCTTCTCATATTGTTTATGTGGCACAT                                 
rJMSF042M09+          CCTTCTCATATTGTTTATGTGGCACATGGAAGGTTGCAACTGGCTATGCCAATGGACAAG
                      ____________________________________________________________
consensus             CCTTCTCATATTGTTTATGTGGCACATGGAAGGTTGCAACTGGCTATGCCAATGGACAAG
 
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rJMSF042M09+          GTTAAGGAGATAAGCAACCTTTCACTAATGAGAACAGTAGAAAGTTGGCTGAGGAAAGAA
                      ____________________________________________________________
consensus             GTTAAGGAGATAAGCAACCTTTCACTAATGAGAACAGTAGAAAGTTGGCTGAGGAAAGAA
 
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rJMSF042M09+          AGGGACGACGAAAGGAAACGGAGGAAAGAGAGGAAGGCAAAGGGGCTCCCGGAGTATGAA
                      ____________________________________________________________
consensus             AGGGACGACGAAAGGAAACGGAGGAAAGAGAGGAAGGCAAAGGGGCTCCCGGAGTATGAA
 
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rJMSF042M09+          AAAGATATTGAAGGCAGTCGTGTGGTCGGGGATCCAGCTCGCGTTGCTGTTCGTGCATTA
                      ____________________________________________________________
consensus             AAAGATATTGAAGGCAGTCGTGTGGTCGGGGATCCAGCTCGCGTTGCTGTTCGTGCATTA
 
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rJMSF042M09+          AACAATGGTTGGGCTGGTGGAAGGCTAAATTCTACCATTGCTGGTGAGGAAAATTTTGTC
                      ____________________________________________________________
consensus             AACAATGGTTGGGCTGGTGGAAGGCTAAATTCTACCATTGCTGGTGAGGAAAATTTTGTC
 
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rJMSF042M09+          CTTAGCTCAAACCGTGTTCTGAGGTAGTTGCTGAATCGATTTCAAATCCATTTTTCATTA
                      ____________________________________________________________
consensus             CTTAGCTCAAACCGTGTTCTGAGGTAGTTGCTGAATCGATTTCAAATCCATTTTTCATTA
 
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rJMSF042M09+          CTGTCTGGTTTTTAGATTATACAGCATTATAATTTGTCATTGGTTGAATAAATTTTTGAG
                      ____________________________________________________________
consensus             CTGTCTGGTTTTTAGATTATACAGCATTATAATTTGTCATTGGTTGAATAAATTTTTGAG
 
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rJMSF042M09+          CAATTTATGCCATTTGGTTACAGTTTACAAATACAATTACCATCTCACATATTTGGTGTT
                      ____________________________________________________________
consensus             CAATTTATGCCATTTGGTTACAGTTTACAAATACAATTACCATCTCACATATTTGGTGTT
 
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rJMSF042M09+          ACTGTAAGCCCCAGGACATGTAAGCCCCAGGACATATATACAGCTTTGTAAGCTATGAAC
                      ____________________________________________________________
consensus             ACTGTAAGCCCCAGGACATGTAAGCCCCAGGACATATATACAGCTTTGTAAGCTATGAAC