| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN016B21 | Sequence | 583 | 011402 (9) | emb|CDO99520.1| | 1e-37 | unnamed protein product [Coffea canephora] | |||||
| JMSF007N19 | Sequence | 302 | 011402 (9) | emb|CDO99520.1| | 8e-12 | unnamed protein product [Coffea canephora] | 734 | 011402 (9) | ref|XP_004134699.1| | 1e-95 | PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Cucumis sativus] ref|X |
| JMSF022E11 | Sequence | 450 | 011402 (9) | gb|EYU43385.1| | 4e-65 | hypothetical protein MIMGU_mgv1a009433mg [Erythranthe guttata] | |||||
| JMSF025D19 | Sequence | 219 | 011402 (9) | gb|KHN16259.1| | 3e-13 | 30S ribosomal protein S5, chloroplastic [Glycine soja] | 162 | 011402 (9) | gb|KHN16259.1| | 2e-13 | 30S ribosomal protein S5, chloroplastic [Glycine soja] |
| JMSF031H06 | Sequence | 653 | 011402 (9) | emb|CDO99520.1| | 2e-40 | unnamed protein product [Coffea canephora] | 761 | 011402 (9) | ref|XP_004134699.1| | 6e-98 | PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Cucumis sativus] ref|X |
| JMSF042L06 | Sequence | 562 | 000567 (13) | gb|KJB83793.1| | 6e-61 | hypothetical protein B456_013G264900 [Gossypium raimondii] | 792 | 011402 (9) | ref|XP_011086055.1| | 3e-91 | PREDICTED: 30S ribosomal protein S5, chloroplastic [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMSF031H06- GATCCAT
____________________________________________________________
consensus GATCCAT
. : . : . : . : . : . :
JMFN016B21- GCTGCCTCTGCAACCTCTCTCTCCGCCTTCTCTTC
JMSF007N19- AACCCACCATGGCTGCCTCTGCAACCTCTCTCTCCGCCTTCTCTTC
JMSF031H06- CCATTTCTAAACCCAACCCACCATGGCTGCCTCTGCAACCTCTCTCTCCGCCTTCTCTTC
____________________________________________________________
consensus CCATTTCTAAACCCAACCCACCATGGCTGCCTCTGCAACCTCTCTCTCCGCCTTCTCTTC
. : . : . : . : . : . :
JMFN016B21- TCTCTCCCTCCGCAACCACCCGCCCACGCGCCTCCGCTCTCACCCCACCGCTCCCTTTTT
JMSF007N19- TCTCTCCCTCCGCAACCACCCGCCCACGCGCCTCCGCTCTCACCCCACCGCTCCCTTTTT
JMSF031H06- TCTCTCCCTCCGCAACCACCCGCCCACGCGCCTCCGCTCTTACCCCACCGCTCCCTTTTT
____________________________________________________________
consensus TCTCTCCCTCCGCAACCACCCGCCCACGCGCCTCCGCTCTCACCCCACCGCTCCCTTTTT
. : . : . : . : . : . :
JMFN016B21- CTTACTCACCCCCAAACCCTCCAGCTTTTCTCTCTTCTTCCCCGCCAACACCTCTAAGCT
JMSF007N19- CTTACTCACCCCCAAACCCTCCAGCTTTTCTCTCTTCTTCCCCGCCAACACCTCTAAGCT
JMSF031H06- CTTACTCACCCCCAAACCCTCCAGCTTTTCTCTCTTCTTCCCCGCCAACACCTCTAAGCT
____________________________________________________________
consensus CTTACTCACCCCCAAACCCTCCAGCTTTTCTCTCTTCTTCCCCGCCAACACCTCTAAGCT
. : . : . : . : . : . :
JMFN016B21- CACGCCCATTAACGCCGGCTCCTCCGACATTGAGACCACTTTCTTCGACAACGTAGACCC
JMSF007N19- CACGCCCATTAACGCCGGCTCCTCCGACATTGAGACCACTTTCTTCGACAACGTAGACCC
JMSF031H06- CACGCCCATTAACGCCGGCTCCTCCGACATTGAGACCACTTTCTTCGACAACGTAGACCC
____________________________________________________________
consensus CACGCCCATTAACGCCGGCTCCTCCGACATTGAGACCACTTTCTTCGACAACGTAGACCC
. : . : . : . : . : . :
JMFN016B21- GGATCAAGTTTTCACCTTTGACCCTCCAGCCCGACCGGAAGGCTATGTTCCGCCGCCCTA
JMSF007N19- GGATCAAGTTTTCACCTTTGACCCTCCAGCCCGACCGGAAGGCTATGTTCCGCCGCCCTA
JMSF031H06- GGATCAAGTTTTCACCTTTGACCCTCCAGCCCGACCGGAAGGCTATGTTCCGCCGCCCTA
rJMSF007N19+ TCCAGCCCGACCGGAAGGCTATGTTCCGCCGCCCTA
rJMSF031H06+ GGATCAAGNTTTCACCTTTGACCCTCCAGCCCGACCGGAAGGCTATGTTCCGCCGCCCTA
rJMSF042L06+ TTCCGCCGCCCTA
____________________________________________________________
consensus GGATCAAGTTTTCACCTTTGACCCTCCAGCCCGACCGGAAGGCTATGTTCCGCCGCCCTA
. : . : . : . : . : . :
JMFN016B21- CTTCGATGAAGCCGCGGAGGAATCTGAGGAGGACATTGCCCGGGCCTATGAGGAGCTCTA
JMSF007N19- CTTCGATGAAGCCGC
JMSF031H06- CTTCGATGAAGCCGCGGAGGAATCTGAGGAGGACATTGCCCGGGCCTATGAGGAGCTCTA
rJMSF007N19+ CTTCGATGAAGCCGCGGAGGAATCTGAGGAGGACATTGCCCGGGCCTATGAGGAGCTCTA
rJMSF031H06+ CTTCGATGAAGCCGCGGAGGAATCTGAGGAGGACATTGCCCGGGCCTATGAGGAGCTCTA
rJMSF042L06+ CTTCGATGAAGCCGCGGAGGAATCTGAGGAGGACATTGCCCGGGCCTATGAGGAGCTCTA
____________________________________________________________
consensus CTTCGATGAAGCCGCGGAGGAATCTGAGGAGGACATTGCCCGGGCCTATGAGGAGCTCTA
. : . : . : . : . : . :
JMFN016B21- CGGACCCGCCTACAGTGGGGAGAGCTTACTGGGGAATGATTTGTATGTTATGGACTCTAA
JMSF031H06- CGGACCCGCCTACAGTGGGGAGAGCTTACTGGGGAATGATTTGTATGTTATGGACTCTAA
rJMSF007N19+ CGGACCCGCCTACAGTGGGGAGAGCTTACTGGGGAATGATTTGTATGTTATGGACTCTAA
rJMSF031H06+ CGGACCCGCCTACAGTGGGGAGAGCTTACTGGGGAATGATTTGTATGTTATGGACTCTAA
rJMSF042L06+ CGGACCCGCCTACAGTGGGGAGAGCTTACTGGGGAATGATTTGTATGTTATGGACTCTAA
____________________________________________________________
consensus CGGACCCGCCTACAGTGGGGAGAGCTTACTGGGGAATGATTTGTATGTTATGGACTCTAA
. : . : . : . : . : . :
JMFN016B21- GGTGAAGAAGACAATTGGGTTTGGGTCGGCTGCCAAGAAAGATAGGCCCAAAGATGGGTT
JMSF031H06- GGTGAAGAAGACAATTGGGTTTGGGTCGGCTGCCAAGAAAGATAGGCCCAAAGATGGGTT
rJMSF007N19+ GGTGAAGAAGACAATTGGGTTTGGGTCGGCTGCCAAGAAAGATAGGCCCAAAGATGGGTT
rJMSF031H06+ GGTGAAGAAGACAATTGGGTTTGGGTCGGCTGCCAAGAAAGATAGGCCCAAAGATGGGTT
rJMSF042L06+ GGTGAAGAAGACAATTGGGTTTGGGTCGGCTGCTAAGAAAGAGAGGCCCAAAGATGGGTT
____________________________________________________________
consensus GGTGAAGAAGACAATTGGGTTTGGGTCGGCTGCCAAGAAAGATAGGCCCAAAGATGGGTT
. : . : . : . : . : . :
JMFN016B21- TGATGAGAGAGTGGTGCAGGTGAGGCGTGTGACCAAGGTGGTTAAGGGTGGTAAACAACT
JMSF031H06- TGATGAGAGAGTGGTGCAGGTGAGGCGTGTGACCAAGGTGGTTAAGGGTGGTAAACAACT
rJMSF007N19+ TGATGAGAGAGTGGTGCAGGTGAGGCGTGTGACCAAGGTGGTTAAGGGTGGTAAACAACT
rJMSF031H06+ TGATGAGAGAGTGGTGCAGGTGAGGCGTGTGACCAAGGTGGTTAAGGGTGGTAAACAACT
rJMSF042L06+ TGATGAGAGAGTGGTGCAGGTGAGGCGTGTGACCAAGGTGGTTAAGGGTGGGAAACAACT
____________________________________________________________
consensus TGATGAGAGAGTGGTGCAGGTGAGGCGTGTGACCAAGGTGGTTAAGGGTGGTAAACAACT
. : . : . : . : . : . :
JMFN016B21- GCATTTCAGAGCTGTTGTGGTTGTGGGTGACAAGAAGGGTCAAGTTGGTGTGGGTGTTGG
JMSF031H06- GCATTTCAGAGCTGTTGTGGTTGTGGGTGACAAGAAGGGTCAAGTTGGTGTGGGTGTTGG
rJMSF007N19+ GCATTTCAGAGCTGTTGTGGTTGTGGGTGACAAGAAGGGTCAAGTTGGTGTGGGTGTTGG
rJMSF031H06+ GCATTTCAGAGCTGTTGTGGTTGTGGGTGACAAGAAGGGTCAAGTTGGTGTGGGTGTTGG
rJMSF022E11+ GTGGGTGTTGG
rJMSF042L06+ GCATTTCAGAGCAGTTGTGGTGGTGGGTGACAAGAAGGGTCAAGTTGGTGTGGGTGTTGG
____________________________________________________________
consensus GCATTTCAGAGCTGTTGTGGTTGTGGGTGACAAGAAGGGTCAAGTTGGTGTGGGTGTTGG
. : . : . : . : . : . :
JMFN016B21- CA
JMSF031H06- CAAGGCAAAAGAAGTGATTTCTGCTGTTCAGAAATCTGCTTTGAAT
rJMSF007N19+ CAAGGCAAAAGAAGTGATTTCTGCTGTTCAGAAATCTGCTTTGAATGCTAGGAGGAATAT
rJMSF031H06+ CAAGGCAAAAGAAGTGATTTCTGCTGTTCAGAAATCTGCTTTGAATGCTAGGAGGAATAT
rJMSF022E11+ CAAGGCAAAAGAAGTGATTTCTGCTGTTCAGAAATCTGCTTTGAATGNTAGGAGGAATAT
rJMSF042L06+ CAAGGCAAAAGAAGTTATTTCTGCTGTTCAGAAATCTGCTTTGAATGCTAGGAGGAATAT
____________________________________________________________
consensus CAAGGCAAAAGAAGTGATTTCTGCTGTTCAGAAATCTGCTTTGAATGCTAGGAGGAATAT
. : . : . : . : . : . :
rJMSF007N19+ CATCACTGTGCCCATGACTAAATATTCCACCTTCCCTCACAGATCTGAAGCAAAGTATGG
rJMSF031H06+ CATCACTGTGCCCATGACTAAATATTCCACCTTCCCTCACAGATCTGAAGCAAAGTATGG
rJMSF022E11+ CATCACTGTGCCCATGACTAAATATTCCACCTTCCCTCACAGATCTGAAGCAAAGTATGG
rJMSF042L06+ CATCACTGTGCCCATGACTAAATATTCCACCTTCCCTCACAGATCCGAAGCAAAGTATGG
____________________________________________________________
consensus CATCACTGTGCCCATGACTAAATATTCCACCTTCCCTCACAGATCTGAAGCAAAGTATGG
. : . : . : . : . : . :
rJMSF007N19+ AGCGGCAAAGGTGATGCTTAGGCCTGCTTCTCCAGGTAGCGGTGTGATTGCTGGTGGTGC
rJMSF031H06+ AGCGGCAAAGGTGATGCTTAGGCCTGCTTCTCCAGGTAGCGGTGTGATTGCTGGTGGTGC
rJMSF022E11+ AGCGGCAAAGGTGATGCTTAGGCCTGCTTCTCCAGGTAGCGGTGTGATTGCTGGTGGTNC
rJMSF042L06+ AGCGGCAAAGGTGATGCTTAGACCTGCTTCTCCAGGTAGCGGTGTGATTGCTGGTGGTGC
____________________________________________________________
consensus AGCGGCAAAGGTGATGCTTAGGCCTGCTTCTCCAGGTAGCGGTGTGATTGCTGGTGGTGC
. : . : . : . : . : . :
rJMSF007N19+ CGTAAGGGTTGTTTTAGAATTGGCGGGACTTCAGAACGCTTTGGGAAAACAGCTCGGGAG
rJMSF031H06+ CGTAAGGGTTGTTTTAGAATTGGCGGGACTTCAGAACGCTTTGGGAAAACAGCTCGGGAG
rJMSF022E11+ CGTAAGGGTTGTTTTAGAATTGGCGGGACTTCAGAACGCTTNGGGAAAACAGCTCGGGAG
JMSF025D19- GAG
rJMSF025D19+ GAG
rJMSF042L06+ CGTAAGGGTTGTTTTAGAATTGGCGGGACTTCAGAACGCTTTGGGAAAACAGCTCGGGAG
____________________________________________________________
consensus CGTAAGGGTTGTTTTAGAATTGGCGGGACTTCAGAACGCTTTGGGAAAACAGCTCGGGAG
. : . : . : . : . : . :
rJMSF007N19+ TAACAATGCACTGAACAATGCAAGAGCCACCGTGGAAGCGATACTGCAAATGAGACAATT
rJMSF031H06+ TAACAATGCACTGAACAATGCAAGAGCCACCGTGGAAGCGATACTGCAAATGAGACAATT
rJMSF022E11+ TAACAATGCACTGAACAATNCAAGAGCCACCGTGGAAGCGATACTGCAAATGAGACAATT
JMSF025D19- TAACAATGCACTGAACAATGCAAGAGCCACCGTGGAAGCGATACTGCAAATGAGACAATT
rJMSF025D19+ TAACAATGCACTGAACAATGCAAGAGCCACCGTGGAAGCGATACTGCAAATGAGACAATT
rJMSF042L06+ TAACAATGCACTGAACAATGCAAGAGCCACCGTGGAAGCGATACTGCAAATGAGACAATT
____________________________________________________________
consensus TAACAATGCACTGAACAATGCAAGAGCCACCGTGGAAGCGATACTGCAAATGAGACAATT
. : . : . : . : . : . :
rJMSF007N19+ CAGAGAGGTTGCAGAGGAGCGCGGCATTCCAATGGAAGAACTGTGGAAATAGAGATCTAC
rJMSF031H06+ CAGAGAGGTTGCAGAGGAGCGCGGCATTCCAATGGAAGAACTGTGGAAATAGAGATCTAC
rJMSF022E11+ CAGAGAGGTTGCAGAGGAGCGCGGCATTCCAATGGAAGAACTGTGGAAATAGAGATCTAC
JMSF025D19- CAGAGAGGTTGCAGAGGAGCGCGGCATTCCAATGGAAGAACTGTGGAAATAGAGATCTAC
rJMSF025D19+ CAGAGAGGTTGCAGAGGAGCGCGGCATTCCAATGGAAGAACTGTGGAAATAGAGATCTAC
rJMSF042L06+ CAGAGAGGTTGCAGAGGAGCGCGGCATTCCAATGGAAGAACTGTGGAAATAGAGATCTAC
____________________________________________________________
consensus CAGAGAGGTTGCAGAGGAGCGCGGCATTCCAATGGAAGAACTGTGGAAATAGAGATCTAC
. : . : . : . : . : . :
rJMSF007N19+ AACTTTCTTTTAAAAATTAAAGTCTTTGTAGAAATT
rJMSF031H06+ AACTTTCTTTTAAAAATTAAAGTCTTTGTAGAAATTGTTT
rJMSF022E11+ AACTTTCTTTTAAAAATTAAAGTCTTTGTAGAAATTGTTTTGTAAAACACTGATCATTG
JMSF025D19- AACTTTCTTTTAAAAATTAAAGTCTTTGTAGAAATTGTTTTGTAAAACACTGATCATTGG
rJMSF025D19+ AACTTTCTTTTAAAAATTAAAGTCTTTGTAGAAATTGTT
rJMSF042L06+ AACTTTCTTTTAAAAATTAAAGTCTTTGTAGAAATTGTTTTGTAAAACACTGATCATT-G
____________________________________________________________
consensus AACTTTCTTTTAAAAATTAAAGTCTTTGTAGAAATTGTTTTGTAAAACACTGATCATTGG
. : . : . : . : . : . :
JMSF025D19- CAATTACTATTTTTTGATTTCTGCAGAAA
rJMSF042L06+ CAATTACTATTTTTTGAGTTCTGCAGAAATGATAATTTTTTAAATTTGATATGTAANTTA
____________________________________________________________
consensus CAATTACTATTTTTTGATTTCTGCAGAAATGATAATTTTTTAAATTTGATATGTAANTTA