Contig 011401:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF030P13-                  GAGGGCGTGGGAGTCTATTTCCCTCTCCTCACTGTCTCAGATTTCAAACTTGA
JMSF042K08-                                                               AAACTTGA
                      ____________________________________________________________
consensus                    GAGGGCGTGGGAGTCTATTTCCCTCTCCTCACTGTCTCAGATTTCAAACTTGA
 
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JMSF030P13-           GTCCATTGCAGCTTTCAGATTTCAGATCTCAGTCCATCGGACTCCTCACTAATCCGGTTT
JMSF042K08-           GTCCATTGCAGCTTTCAGATTTCAGATCTCAGTCCATCGGACTCCTCACTAATCCGGTTT
                      ____________________________________________________________
consensus             GTCCATTGCAGCTTTCAGATTTCAGATCTCAGTCCATCGGACTCCTCACTAATCCGGTTT
 
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JMSF030P13-           GCTTCTGCTCATATATATCAAGGCAGCTACAGGTGGAGTTTGACACCGATGGAAATGCAG
JMSF042K08-           GCTTCTGCTCATATATATCAAGGCAGCTACAGGTGGAGTTTGACACCGATGGAAATGCAG
rJMSF030P13+                                                             GAAATGCAG
                      ____________________________________________________________
consensus             GCTTCTGCTCATATATATCAAGGCAGCTACAGGTGGAGTTTGACACCGATGGAAATGCAG
 
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JMSF030P13-           GAAGGAGGTCACCCATACGTTCCTAGAGACCTAAAATTGCCTGGGTTTGTGCCTTGTTTC
JMSF042K08-           GAAGGAGGTCACCCATACGTTCCTAGAGACCTAAAATTGCCTGGGTTTGTGCCTTGTTTC
rJMSF030P13+          GAAGGAGGTCACCCATACGTTCCTAGAGACCTAAAATTGCCTGGGTTTGTGCCTTGTTTC
                      ____________________________________________________________
consensus             GAAGGAGGTCACCCATACGTTCCTAGAGACCTAAAATTGCCTGGGTTTGTGCCTTGTTTC
 
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JMSF030P13-           CTCACACAATTGGACATTGTTGGTGTGTATGGAGGTGTTTCTACACTGGTTGTTGCATTC
JMSF042K08-           CTCACACAATTGGACATTGTTGGTGTGTATGGAGGTGTTTCTACACTGGTTGTTGCATTC
rJMSF030P13+          CTCACACAATTGGACATTGTTGGTGTGTATGGAGGTGTTTCTACACTGGTTGTTGCATTC
                      ____________________________________________________________
consensus             CTCACACAATTGGACATTGTTGGTGTGTATGGAGGTGTTTCTACACTGGTTGTTGCATTC
 
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JMSF030P13-           ATGTGGATCTTCTCTGGGCGGTTCCCTAAAATATCAAAGGGCGACAGGTTGCTCATGTGC
JMSF042K08-           ATGTGGATCTTCTCTGGGCGGTTCCCTAAAATATCAAAGGGCGACAGGTTGCTCATGTGC
rJMSF030P13+          ATGTGGATCTTCTCTGGGCGGTTCCCTAAAATATCAAAGGGCGACAGGTTGCTCATGTGC
                      ____________________________________________________________
consensus             ATGTGGATCTTCTCTGGGCGGTTCCCTAAAATATCAAAGGGCGACAGGTTGCTCATGTGC
 
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JMSF030P13-           TGGTGGATATTCACTGGCCTTACACACATGATCCTTGAGGGCTACTTTGTTTTCTCTCCT
JMSF042K08-           TGGTGGATATTCACTGGCCTTACACACATGATCCTTGAGGGCTACTTTGTTTTCTCTCCT
rJMSF030P13+          TGGTGGATATTCACTGGCCTTACACACATGATCCTTGAGGGCTACTTTGTTTTCTCTCCT
                      ____________________________________________________________
consensus             TGGTGGATATTCACTGGCCTTACACACATGATCCTTGAGGGCTACTTTGTTTTCTCTCCT
 
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JMSF030P13-           AATTTCTACAAGGAAAAGACTCCCGTTTACCTTGCAGAAGTTTGGAAGGAGTACAGCAAG
JMSF042K08-           AATTTCTACAAGGAAAAGACTCCCGTTTACCTTGCAGAAGTTTGGAAGGAGTACAGCAAG
rJMSF030P13+          AATTTCTACAAGGAAAAGACTCCCGTTTACCTTGCAGAAGTTTGGAAGGAGTACAGCAAG
rJMSF042K08+                                                   TTGGAAGGAGTACAGCAAG
                      ____________________________________________________________
consensus             AATTTCTACAAGGAAAAGACTCCCGTTTACCTTGCAGAAGTTTGGAAGGAGTACAGCAAG
 
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JMSF030P13-           GGAGATTCTCGGTATGCAGCACGTGATTCTGCTGTTATTTCAGTTGAAGGAATCACAGCC
JMSF042K08-           GGAGATTCTCGGTATGCAGCACGTGATTCTGCTGTTATTTCAGTTGAAGGAATCACAGCC
rJMSF030P13+          GGAGATTCTCGGTATGCAGCACGTGATTCTGCTGTTATTTCAGTTGAAGGAATCACAGCC
rJMSF042K08+          GGAGATTCTCGGTATGCAGCACGTGATTCTGCTGTTATTTCAGTTGAAGGAATCACAGCC
                      ____________________________________________________________
consensus             GGAGATTCTCGGTATGCAGCACGTGATTCTGCTGTTATTTCAGTTGAAGGAATCACAGCC
 
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JMSF030P13-           GTTCTAGAGGGACCAGCATGTCTTCTTGCAGTGTATGCTATAGCTACAAAGAAGTCGTAT
JMSF042K08-           GTTCTAGAGGGACCAGCATGTCTTCTTGCAGTGTATGCTATAGCTACAAAGAAGTCGTAT
rJMSF030P13+          GTTCTAGAGGGACCAGCATGTCTTCTTGCAGTGTATGCTATAGCTACAAAGAAGTCGTAT
rJMSF042K08+          GTTCTAGAGGGACCAGCATGTCTTCTTGCAGTGTATGCTATAGCTACAAAGAAGTCGTAT
                      ____________________________________________________________
consensus             GTTCTAGAGGGACCAGCATGTCTTCTTGCAGTGTATGCTATAGCTACAAAGAAGTCGTAT
 
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JMSF030P13-           AGGTATATACTACAGGTGGCTATTTCTTTGGGCCAGCTCTATGGTACTGCTGTATATTTC
JMSF042K08-           AGGTATATACTACAGGTGGCTATTTCTTTGGGCCAGCTCTATGGTACTGCTGTATATTTC
rJMSF030P13+          AGGTATATACTACAGGTGGCTATTTCTTTGGGCCAGCTCTATGGTACTGCTGTATATTTC
rJMSF042K08+          AGGTATATACTACAGGTGGCTATTTCTTTGGGCCAGCTCTATGGTACTGCTGTATATTTC
                      ____________________________________________________________
consensus             AGGTATATACTACAGGTGGCTATTTCTTTGGGCCAGCTCTATGGTACTGCTGTATATTTC
 
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JMSF030P13-           ATTACAGCTGTCTT                                              
JMSF042K08-           ATTACAGCTGTCTTGGAGGGTGATAATTTTGCTGTAAGCCCCTTTTATTACTTCTGGTAC
rJMSF030P13+          ATTACAGCTGTCTTGGAGGGTGATAATTTTGCTGTAAGCCCCTTTTATTACTTCTGGTAC
rJMSF042K08+          ATTACAGCTGTCTTGGAGGGTGATAATTTTGCTGTAAGCCCCTTTTATTACTTCTGGTAC
                      ____________________________________________________________
consensus             ATTACAGCTGTCTTGGAGGGTGATAATTTTGCTGTAAGCCCCTTTTATTACTTCTGGTAC
 
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JMSF042K08-           TATGTCTTTGCAAATTCCTTCTGGGTCTGGATACCCACAATCATAATCGTCCGTTGCTGG
rJMSF030P13+          TATGTCTTTGCAAATTCCTTCTGGGTCTGGATACCCACAATCATAATCGTCCGTTGCTGG
rJMSF042K08+          TATGTCTTTGCAAATTCCTTCTGGGTCTGGATACCCACAATCATAATCGTCCGTTGCTGG
                      ____________________________________________________________
consensus             TATGTCTTTGCAAATTCCTTCTGGGTCTGGATACCCACAATCATAATCGTCCGTTGCTGG
 
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JMSF042K08-           AGGAGAATTAGTTCTGCTGTC                                       
rJMSF030P13+          AGGAGAATTAGTTCTGCTGTCCAGATACAAGACCAGACAAAGACCAAGACTCGCTGAGGC
rJMSF042K08+          AGGAGAATTAGTTCTGCTGTCCAGATACAAGACCAGACAAAGACCAAGACTCGCTGAGGC
                      ____________________________________________________________
consensus             AGGAGAATTAGTTCTGCTGTCCAGATACAAGACCAGACAAAGACCAAGACTCGCTGAGGC
 
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rJMSF030P13+          CATCTTTTCATTTGTTGTGGTACTGAATTTATTTGAGTTTTGTGGGAACAATACAGGCTG
rJMSF042K08+          CATCTTTTCATTTGTTGTGGTACTGAATTTATTTGAGTTTTGTGGGAACAATACAGGCTG
                      ____________________________________________________________
consensus             CATCTTTTCATTTGTTGTGGTACTGAATTTATTTGAGTTTTGTGGGAACAATACAGGCTG
 
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rJMSF030P13+          TTGGGACTCATTTCTTTAGAGATAGAA                                 
rJMSF042K08+          TTGGGACTCATTTCTTTAGAGATAGAACTGTAATGCCCTGGTAATAGTGATATATTTAAA
                      ____________________________________________________________
consensus             TTGGGACTCATTTCTTTAGAGATAGAACTGTAATGCCCTGGTAATAGTGATATATTTAAA
 
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rJMSF042K08+          AGGAACTTTTGGATTCGTTTTGGCTTCATTCCAGTCCCATTCATATAATGGGGTTGTTTG
                      ____________________________________________________________
consensus             AGGAACTTTTGGATTCGTTTTGGCTTCATTCCAGTCCCATTCATATAATGGGGTTGTTTG
 
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rJMSF042K08+          GTAGGATAGAATTGCAATTCCATTCCTACCAAACTCCATGAAGTTGCAATTTCATGGTTT
                      ____________________________________________________________
consensus             GTAGGATAGAATTGCAATTCCATTCCTACCAAACTCCATGAAGTTGCAATTTCATGGTTT
 
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rJMSF042K08+          GATTGGAGGGAATTGCAATTTCACAGAATTACAATTCTTAAGGTTCCCTCTAGGAATTGC
                      ____________________________________________________________
consensus             GATTGGAGGGAATTGCAATTTCACAGAATTACAATTCTTAAGGTTCCCTCTAGGAATTGC
 
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rJMSF042K08+          AATTCCACACTGTGAAATTGTAATTTTATGATAAATTACCCATTTTATTATTTTTATGAT
                      ____________________________________________________________
consensus             AATTCCACACTGTGAAATTGTAATTTTATGATAAATTACCCATTTTATTATTTTTATGAT