Contig 011400:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025L24Sequence396010727 (10)751011400 (6)ref|XP_009604778.1|3e-75PREDICTED: cationic amino acid transporter 2, vacuolar-like isoform X1 [Nicotia
JMSF025M09Sequence676010727 (10)ref|XP_010534036.1|4e-24PREDICTED: cationic amino acid transporter 2, vacuolar-like, partial [Tarenaya 791011400 (6)ref|XP_009604778.1|3e-55PREDICTED: cationic amino acid transporter 2, vacuolar-like isoform X1 [Nicotia
JMSF029I13Sequence593010727 (10)ref|XP_010534036.1|1e-09PREDICTED: cationic amino acid transporter 2, vacuolar-like, partial [Tarenaya 724011400 (6)ref|XP_009604778.1|9e-61PREDICTED: cationic amino acid transporter 2, vacuolar-like isoform X1 [Nicotia
JMSF042H24Sequence700010727 (10)emb|CDP17637.1|5e-73unnamed protein product [Coffea canephora]700011400 (6)gb|AAN77151.1|9e-45fiber protein Fb12 [Gossypium barbadense]
JMSF050J01Sequence619010727 (10)ref|XP_011069954.1|1e-24PREDICTED: cationic amino acid transporter 2, vacuolar isoform X2 [Sesamum indi742011400 (6)emb|CDP17637.1|2e-58unnamed protein product [Coffea canephora]
JMSF052B04Sequence679010727 (10)ref|XP_006391600.1|1e-70hypothetical protein EUTSA_v10023348mg [Eutrema salsugineum] gb|ESQ28886.1| hypo804011400 (6)emb|CDP17637.1|3e-60unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF025L24+                                             TTCTAGAGAAAGCAGCTGCGCAAAT
rJMSF052B04+                                              TCTAGAGAAAGCAGCTGCGCAAAT
                      ____________________________________________________________
consensus                                                TTCTAGAGAAAGCAGCTGCGCAAAT
 
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rJMSF025L24+          TAGCC-TTTTAGTAAATGAAAGGCGGAAAATTGCTGGATGGACCATAATGTTTACGTGTC
rJMSF025M09+                                         TGCTGGATGGACCATAATGTTTACGTGTC
rJMSF050J01+                   TAGTAAATGAAAGGCGGAAAATTGCTGGATGGACCATAATGTTTACGTGTC
rJMSF029I13+                                         TGCTGGATGGACCATAATGTTTACGTGTC
rJMSF052B04+          TAGCCTTTTTAGTAAATGAAAGGCGGAAAATTGCTGGATGGACCATAATGTTTACGTGTC
                      ____________________________________________________________
consensus             TAGCCTTTTTAGTAAATGAAAGGCGGAAAATTGCTGGATGGACCATAATGTTTACGTGTC
 
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rJMSF025L24+          TCGGGGTGCTTGTACTTACTTCCGCCGCTTCGACTGTTGGCCTGCCAAATTCGGTGAGGT
rJMSF025M09+          TCGGGGTGCTTGTACTTACTTCCGCCGCTTCGACTGTTGGCCTGCCAAATTCGGTGAGGT
rJMSF050J01+          TCGGGGTGCTTGTACTTACTTCCGCCGCTTCGACTGTTGGCCTGCCAAATTCGGTGAGGT
rJMSF029I13+          TCGGGGTGCTTGTACTTACTTCCGCCGCTTCGACTGTTGGCCTGCCAAATTCGGTGAGGT
rJMSF052B04+          TCGGGGTGCTTGTACTTACTTCCGCCGCTTCGACTGTTGGCCTGCCAAATTCGGTGAGGT
rJMSF042H24+                              TCCGCCGCTTCGACTGTTGGCCTGCCAAATTCGGTGAGGT
                      ____________________________________________________________
consensus             TCGGGGTGCTTGTACTTACTTCCGCCGCTTCGACTGTTGGCCTGCCAAATTCGGTGAGGT
 
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rJMSF025L24+          TCACGCTTTCTGGAATCGGTGGTTTCCTAGTGCTCTCGGGTCTGGTCGTGTTTACAACCA
rJMSF025M09+          TCACGCTTTCTGGAATCGGTGGTTTCCTAGTGCTCTCGGGTCTGGTCGTGCTTACAACCA
rJMSF050J01+          TCACGCTTTCTGGAATCGGTGGTTTCCTAGTGCTCTCGGGTCTGGTCGTGCTTACAACCA
rJMSF029I13+          TCACGCTTTCTGGAATCGGTGGTTTCCTAGTGCTCTCGGGTCTGGTCGTGCTTACAACCA
rJMSF052B04+          TCACGCTTTCTGGAATCGGTGGTTTCCTAGTGCTCTCGGGTCTGGTCGTGCTTACAACCA
rJMSF042H24+          TCACGCTTTCTGGAATCGGTGGTTTCCTAGTGCTCTCGGGTCTGGTCGTGCTTACAACCA
                      ____________________________________________________________
consensus             TCACGCTTTCTGGAATCGGTGGTTTCCTAGTGCTCTCGGGTCTGGTCGTGCTTACAACCA
 
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rJMSF025L24+          TAGACCAAGACGTTGCCAGGCACAGCTTTGGACATTCTGGAGGTTTTGTTTGTCCGTTTG
rJMSF025M09+          TAGACCAAGACGTTGCCAGGCACAGCTTTGGACATTCTGGAGGTTTTGTTTGTCCGTTTG
rJMSF050J01+          TAGACCAAGACGTTGCCAGGCACAGCTTTGGACATTCTGGAGGTTTTGTTTGTCCGTTTG
rJMSF029I13+          TAGACCAAGACGTTGCCAGGCACAGCTTTGGACATTCTGGAGGTTTTGTTTGTCCGTTTG
rJMSF052B04+          TAGACCAAGACGTTGCCAGGCACAGCTTTGGACATTCTGGAGGTTTTGTTTGTCCGTTTG
rJMSF042H24+          TAGACCAAGACGTTGCCAGGCACAGCTTTGGACATTCTGGAGGTTTTGTTTGTCCGTTTG
                      ____________________________________________________________
consensus             TAGACCAAGACGTTGCCAGGCACAGCTTTGGACATTCTGGAGGTTTTGTTTGTCCGTTTG
 
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rJMSF025L24+          TTCCCCTTCTGCCAATCGCCTCCATTCTCATCAACGTGTACTTGTTGATAAATCTCGGCG
rJMSF025M09+          TTCCCCTTCTGCCAATCGCCTCCATTCTCATCAACGTGTACTTGTTGATAAATCTCGGCG
rJMSF050J01+          TTCCCCTTCTGCCAATCGCCTCCATTCTCATCAACGTGTACTTGTTGATAAATCTCGGCG
rJMSF029I13+          TTCCCCTTCTGCCAATCGCCTCCATTCTCATCAACGTGTACTTGTTGATAAATCTCGGCG
rJMSF052B04+          TTCCCCTTCTGCCAATCGCCTCCATTCTCATCAACGTGTACTTGTTGATAAATCTCGGCG
rJMSF042H24+          TTCCCCTTCTGCCAATCGCCTCCATTCTCATCAACGTGTACTTGTTGATAAATCTCGGCG
                      ____________________________________________________________
consensus             TTCCCCTTCTGCCAATCGCCTCCATTCTCATCAACGTGTACTTGTTGATAAATCTCGGCG
 
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rJMSF025L24+          CCGCGACTTGGGCCCGCGTATCCATATGGTTGTTAATAGGCGTAATCGTGTATGTTTTCT
rJMSF025M09+          CCGCGACTTGGGCCCGCGTATCCATATGGTTGTTAATAGGCGTAATCGTGTATGTTTTCT
rJMSF050J01+          CCGCGACTTGGGCCCGCGTATCCATATGGTTGTTAATAGGCGTAATCGTGTATGTTTTCT
rJMSF029I13+          CCGCGACTTGGGCCCGCGTATCCATATGGTTGTTAATAGGCGTAATCGTGTATGTTTTCT
rJMSF052B04+          CCGCGACTTGGGCCCGCGTATCCATATGGTTGTTAATAGGCGTAATCGTGTATGTTTTCT
rJMSF042H24+          CCGCGACTTGGGCCCGCGTATCCATATGGTTGTTAATAGGCGTAATCGTGTATGTTTTCT
                      ____________________________________________________________
consensus             CCGCGACTTGGGCCCGCGTATCCATATGGTTGTTAATAGGCGTAATCGTGTATGTTTTCT
 
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rJMSF025L24+          ATGGCCGAAACCACAGCACACTGCAGCACGCAGTTTATGTACCTGCAGCTCATGTTGACG
rJMSF025M09+          ATGGCCGAAACCACAGCACACTGCAGCACGCAGTTTATGTACCTGCAGCTCATGTTGACG
rJMSF050J01+          ATGGCCGAAACCACAGCACACTGCAGCACGCAGTTTATGTACCTGCAGCTCATGTTGACG
rJMSF029I13+          ATGGCCGAAACCACAGCACACTGCAGCACGCAGTTTGTGTACCTGCAGCTCATGTTGACG
rJMSF052B04+          ATGGCCGAAACCACAGCACACTGCAGCACGCAGTTTATGTACCTGCAGCTCATGTTGACG
rJMSF042H24+          ATGGCCGAAACCACAGCACACTGCAGCACGCAGTTTATGTACCTGCAGCTCATGTTGACG
                      ____________________________________________________________
consensus             ATGGCCGAAACCACAGCACACTGCAGCACGCAGTTTATGTACCTGCAGCTCATGTTGACG
 
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rJMSF025L24+          AGATATATCAGAGCTCAGCACACACCTTAGCGTAGTTCCTCGTCCCCGTTGGCCAAGTGA
rJMSF025M09+          AGATATATCAGAGCTCAGCACACACCTTAGCGTAGTTCCTCGTCCCCGTTGGCCAAGTGA
rJMSF050J01+          AGATATATCAGAGCTCAGCACACACCTTAGCGTAGTTCCTCGTCCCCGTTGGCCAAGTGA
rJMSF029I13+          AGATATATCAGAGCTCAGCACACACCTTAGCGTAGTTCCTCGTCCCCGTTGGCCAAGTGA
rJMSF052B04+          AGATATATCAGAGCTCAGCACACACCTTAGCGTAGTTCCTCGTCCCCGTTGGCCAAGTGA
rJMSF042H24+          AGATATATCAGAGCTCAGCACACACCTTAGCGTAGTTCCTCGTCCCCGTTGGCCAAGTGA
                      ____________________________________________________________
consensus             AGATATATCAGAGCTCAGCACACACCTTAGCGTAGTTCCTCGTCCCCGTTGGCCAAGTGA
 
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rJMSF025L24+          AAATAGGCGTTTTCACTTGTGAGCGCCAAACTAGCGAGAACAATGGCTTCCGGCCATGGG
rJMSF025M09+          AAATAGGCGTTTTCACTTGTGAGCGCCAAACTAGCGAGAACAATGGCTTCCGGCCATGGG
rJMSF050J01+          AAATAGGCGTTTTCACTTGTGAGCGCCAAACTAGCGAGAACAATGGCTTCCGGCCATGGG
rJMSF029I13+          AAATAGGCGTTTTCACTTGTGAGCGCCAAACTAGCGAGAACAATGGCTTCCGGCCATGGG
rJMSF052B04+          AAATAGGCGTTTTCACTTGTGAGCGCCAAACTAGCGAGAACAATGGCTTCCGGCCATGGG
rJMSF042H24+          AAATAGGCGTTTTCACTTGTGAGCGCCAAACTAGCGAGAACAATGGCTTCCGGCCATGGG
                      ____________________________________________________________
consensus             AAATAGGCGTTTTCACTTGTGAGCGCCAAACTAGCGAGAACAATGGCTTCCGGCCATGGG
 
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rJMSF025L24+          AGGAGCTCGTCGCTTTTGTTGTAAGAAAGGTTGTAATATATATATGTTATTGTAGTTTAC
rJMSF025M09+          AGGAGCTCGTCGCTTTTGTTGTAAGAAAGGTTGTAATATATATATGTTATTGTAGTTTAC
rJMSF050J01+          AGGAGCTCGTCGCTTTTGTTGTAAGAAAGGTTGTAATATATATATGTTATTGTAGTTTAC
rJMSF029I13+          AGGAGCTCGTCGCTTTTGTTGTAAGAAAGGTTGTAATATATATATGTTATTGTAGTTTAC
rJMSF052B04+          AGGAGCTCGTCGCTTTTGTTGTAAGAAAGGTTGTAATATATATATGTTATTGTAGTTTAC
rJMSF042H24+          AGGAGCTCGTCGCTTTTGTTGTAAGAAAGGTTGTAATATATATATGTTATTGTAGTTTAC
                      ____________________________________________________________
consensus             AGGAGCTCGTCGCTTTTGTTGTAAGAAAGGTTGTAATATATATATGTTATTGTAGTTTAC
 
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rJMSF025L24+          AGTGGAGGGCTCCGCCGGGGGATGGGGTGTATCTGCTGCCGGTGAGGTTCATTGCAAATG
rJMSF025M09+          AGTGGAGGGCTCCGCCGGGGGATGGGGTGTATCTGCTGCCGGTGAGGTTCATTGCAAATG
rJMSF050J01+          AGTGGAGGGCTCCGCCGGGGGATGGGGTGTATCTGCTGCCGGTGAGGTTCATTGCAAATG
rJMSF029I13+          AGTGGAGGGCTCCGCCGGGGGATGGGGTGTATCTGCTGCCGGTGAGGTTCATTGCAAATG
rJMSF052B04+          AGTGGAGGGCTCCGCCGGGGGATGGGGTGTATCTGCTGCCGGTGAGGTTCATTGCAAATG
rJMSF042H24+          AGTGGAGGGCTCCGCCGGGGGATGGGGTGTATCTGCTGCCGGTGAGGTTCATTGCAAATG
                      ____________________________________________________________
consensus             AGTGGAGGGCTCCGCCGGGGGATGGGGTGTATCTGCTGCCGGTGAGGTTCATTGCAAATG
 
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rJMSF025L24+          ATGGAAAATGTAAATATATATGGTGTAAAATGATAGTTTAGTTTGATGTATTGATTTTAT
rJMSF025M09+          ATGGAAAATGTAAATATATATGGTGTAAAATGATAGTTTAGTTTGATGTATTGATTTTAT
rJMSF050J01+          ATGGAAAATGTAAATATATATGGTGTAAAATGATAGTTTAGTTTGATGTATTGATTTTAT
rJMSF029I13+          ATGGAAAATGTAAATATATATGGTGTAAAATGATAGTTTAG                   
rJMSF052B04+          ATGGAAAATGTAAATATATATGGTGTAAAATGATAGTTTAGTTTGATGTATTGATTTTAT
rJMSF042H24+          ATGGAAAATGTAAATATATATGGTGTAAAATGATAGTTTAGTTTGATGTATTGATTTTAT
                      ____________________________________________________________
consensus             ATGGAAAATGTAAATATATATGGTGTAAAATGATAGTTTAGTTTGATGTATTGATTTTAT
 
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rJMSF025M09+          TAAAGGATTATTGCCTAAAGATTTAAGTTTGTTTGTTTTGCTCTATTTTATATAC     
rJMSF050J01+          TAAAGGATTATTGCCTAAAGATT                                     
rJMSF052B04+          TAAAGGATTATTGCCTAAAGATTTAAGTTTGTTTGTTTTGCTCTATTTTATATAC     
rJMSF042H24+          TAAAGGATTATTGCCTAAAGATTTAAGTTTGTTTGTTTTGCTCTATTTTATATACCAATG
                      ____________________________________________________________
consensus             TAAAGGATTATTGCCTAAAGATTTAAGTTTGTTTGTTTTGCTCTATTTTATATACCAATG