Contig 011397:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001E17Sequence465003837 (4)ref|XP_004235299.1|2e-18PREDICTED: RNA polymerase sigma factor sigA [Solanum lycopersicum]767011397 (4)ref|XP_009771934.1|4e-85PREDICTED: RNA polymerase sigma factor sigA [Nicotiana sylvestris]
JMSF021E12Sequence703003837 (4)ref|XP_004235299.1|2e-42PREDICTED: RNA polymerase sigma factor sigA [Solanum lycopersicum]778011397 (4)ref|XP_009771934.1|6e-101PREDICTED: RNA polymerase sigma factor sigA [Nicotiana sylvestris]
JMSF021E13Sequence688003837 (4)ref|XP_004235299.1|4e-38PREDICTED: RNA polymerase sigma factor sigA [Solanum lycopersicum]772011397 (4)ref|XP_011075762.1|4e-100PREDICTED: RNA polymerase sigma factor sigA [Sesamum indicum]
JMSF042B20Sequence739003837 (4)ref|XP_004235299.1|8e-46PREDICTED: RNA polymerase sigma factor sigA [Solanum lycopersicum]709011397 (4)ref|XP_009771934.1|9e-71PREDICTED: RNA polymerase sigma factor sigA [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF021E13+                                                 AGGCATTAGCTGATAACTCCA
rJMSF021E12+                                                 AGGCATTAGCTGATAACTCAA
                      ____________________________________________________________
consensus                                                    AGGCATTAGCTGATAACTCCA
 
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rJMSF021E13+          GAATGTTAAGATTGCCAAACCATGTTCATGAAAGATTGAGTCTAATCCGAAATGCAAAAA
rJMSF021E12+          GAATGTTAAGATTGCCAACCCATGTTCATGAAAGATTGAGTCTAATCCGAAATGCAAAAA
                      ____________________________________________________________
consensus             GAATGTTAAGATTGCCAACCCATGTTCATGAAAGATTGAGTCTAATCCGAAATGCAAAAA
 
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rJMSF021E13+          AGAGGCTGGAAGAGAAGGGGATAACACCATCAATTGAAAGAATTGCCGAGTCTCTTAATA
rJMSF021E12+          AGAGGCTGGAAGAGAAGGGGATAACACCATCAATTGAAAGAATTGCCGAGTCTCTTAATA
rJMSF001E17+                   AAGAGAAGGGGATAACACCATCAATTGAAAGAATTGCCGAGTCTCTTAATA
                      ____________________________________________________________
consensus             AGAGGCTGGAAGAGAAGGGGATAACACCATCAATTGAAAGAATTGCCGAGTCTCTTAATA
 
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rJMSF021E13+          TGTCCCAAAAGAAAGTGCGAAATGCAACTGAGGCAATCAGCAGGGTGTACTCTCTTGACA
rJMSF021E12+          TGTCCCAAAAGAAAGTGCGAAATGCAACTGAGGCAATCAGCAGGGTGTACTCTCTTGACA
rJMSF001E17+          TGTCCCAAAAGAGAGTGCGAAATGCAACTGAGGCAATCAGCAGGGTGTACTCTCTTGACA
rJMSF042B20+                       AGTGCGAAATGCAACTGAGGCAATCAGCAGGGTGTACTCTCTTGACA
                      ____________________________________________________________
consensus             TGTCCCAAAAGAAAGTGCGAAATGCAACTGAGGCAATCAGCAGGGTGTACTCTCTTGACA
 
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rJMSF021E13+          GGGAAGCTTTCCCCTCTTTAAATGGTCTTCCAGGAGAAACACTCCATAGTTACATTGCTG
rJMSF021E12+          GGGAAGCTTTCCCCTCTTTAAATGGTCTTCCAGGAGAAACACTCCATAGTTACATTGCTG
rJMSF001E17+          GGGAAGCTTTCCCCTCTTTAAATGGTCTTCCAGGAGAAACACTCCATAGTTACATTGCTG
rJMSF042B20+          GGGAAGCTTTCCCCTCTTTAAATGGTCTTCCAGGAGAAACACTCCATAGTTACATTGCTG
                      ____________________________________________________________
consensus             GGGAAGCTTTCCCCTCTTTAAATGGTCTTCCAGGAGAAACACTCCATAGTTACATTGCTG
 
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rJMSF021E13+          ACAATCACCTAGAAAACAACCCTTGGCATGGAGTTGATGAGTGGGCACTCAAGGATGAAG
rJMSF021E12+          ACAATCACCTAGAAAACAACCCTTGGCATGGAGTTGATGAGTGGGCACTCAAGGATGAAG
rJMSF001E17+          ACAATCACCTAGAAAACAACCCTTGGCATGGAGTTGATGAGTGGGCACTCAAGGATGAAG
rJMSF042B20+          ACAATCACCTAGAAAACAACCCTTGGCATGGAGTTGATGAGTGGGCACTCAAGGATGAAG
                      ____________________________________________________________
consensus             ACAATCACCTAGAAAACAACCCTTGGCATGGAGTTGATGAGTGGGCACTCAAGGATGAAG
 
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rJMSF021E13+          TAAAGAACCTGATATGTACAACATTGAGGGAACGGGAGGGGGAGATTATCCGTCTATACT
rJMSF021E12+          TAAAGAACCTGATATGTACAACATTGAGGGAACGGGAGGGGGAGATTATCCGTCTATACT
rJMSF001E17+          TAAAGAACCTGATATGTACAACATTGAGGGAACGGGAGGGGGAGATTATCCGTCTATACT
rJMSF042B20+          TAAAGAACCTGATATGTACAACATTGAGGGAACGGGAGGGGGAGATTATCCGTCTATACT
                      ____________________________________________________________
consensus             TAAAGAACCTGATATGTACAACATTGAGGGAACGGGAGGGGGAGATTATCCGTCTATACT
 
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rJMSF021E13+          ATGGTATTGTTGACAATGAATGTCTTACCTGGGAAGATATTAGTCGACGGATAGGATTAT
rJMSF021E12+          ATGGTATTGTTGACAATGAATGTCTTACCTGGGAAGATATTAGTCGACGGATAGGATTAT
rJMSF001E17+          ATGGTATTGTTGACAATGAATGTCTTACCTGGGAAGATATTAGTCGACGGATAGGATTAT
rJMSF042B20+          ATGGTATTGTTGACAATGAATGTCTTACCTGGGAAGATATTAGTCGACGGATAGGATTAT
                      ____________________________________________________________
consensus             ATGGTATTGTTGACAATGAATGTCTTACCTGGGAAGATATTAGTCGACGGATAGGATTAT
 
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rJMSF021E13+          CCAGGGAGAGAGTTAGGCAGGTTGGGCTCGTTGCACTAGAGAAACTAAAGCACGCCGCAA
rJMSF021E12+          CCAGGGAGAGAGTTAGGCAGGTTGGGCTCGTTGCACTAGAGAAACTAAAGCACGCCGCAA
rJMSF001E17+          CCAGGGAGAGAGTTAGGCAGGTTGGGCTCGTTGCACTAGAGAAACTAAAGCACGCCGCAA
rJMSF042B20+          CCAGGGAGAGAGTTAGGCAGGTTGGGCTCGTTGCACTAGAGAAACTAAAGCACGCCGCAA
                      ____________________________________________________________
consensus             CCAGGGAGAGAGTTAGGCAGGTTGGGCTCGTTGCACTAGAGAAACTAAAGCACGCCGCAA
 
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rJMSF021E13+          GGAGAAGGAAACTTGAAGCCATGCTGATAAAACAATGATTTTTGAACGTCTGAGGTAACG
rJMSF021E12+          GGAGAAGGAAACTTGAAGCCATGCTGATAAAACAATGATTTTTGAACGTCTGAGGTAACG
rJMSF001E17+          GGAGAAGGAAACTTGAAGCCATGCTGATAAAACAATGATTTTTGAACGTCTGAGGTAACG
rJMSF042B20+          GGAGAAGGAAACTTGAAGCCATGCTGATAAAACAATGATTTTTGAACGTCTGAGGTAACG
                      ____________________________________________________________
consensus             GGAGAAGGAAACTTGAAGCCATGCTGATAAAACAATGATTTTTGAACGTCTGAGGTAACG
 
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rJMSF021E13+          GATGAAATTCACTGTAAATAGAGAAAAGGTCTGCAATTTAGGTTTATTTTTCCGGATTGA
rJMSF021E12+          GATGAAATTCACTGTAAATAGAGAAAAGGTCTGCAATTTAGGTTTATTTTTCCGGATTGA
rJMSF001E17+          GATGAAATTCACTGTAAATAGAGAAAAGGTCTGCAATTTAGGTTTATTTTTCCGGATTGA
rJMSF042B20+          GATGAAATTCACTGTAAATAGAGAAAAGGTCTGCAATTTAGGTTTATTTTTCCGGATTGA
                      ____________________________________________________________
consensus             GATGAAATTCACTGTAAATAGAGAAAAGGTCTGCAATTTAGGTTTATTTTTCCGGATTGA
 
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rJMSF021E13+          AGAAGAGACTACAGTTTGTAGTTCCTTAATTAGCAGCAGAGACAGAAAATATGTTGCAGA
rJMSF021E12+          AGAAGAGACTACAGTTTGTAGTTCCTTAATTAGCAGCAGAGACAGAAAATATGTTGCAGA
rJMSF001E17+          AGAAGAGACTACAGTTTGTAGTTCCTTAATTAGCAGCAGAGACAGAAAATATGTTGCAGA
rJMSF042B20+          AGAAGAGACTACAGTTTGTAGTTCCTTAATTAGCAGCAGAGACAGAAAATATGTTGCAGA
                      ____________________________________________________________
consensus             AGAAGAGACTACAGTTTGTAGTTCCTTAATTAGCAGCAGAGACAGAAAATATGTTGCAGA
 
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rJMSF021E13+          GGTGGGACTGGGACCTCAAATTGTTGATGAAGAATCAATCATTGTTTAGCAAAGTGATTT
rJMSF021E12+          GGTGGGACTGGGACCTCAAATTGTTGATGAAGAATCAATCATTGTTTAGCAAAGTGATTT
rJMSF001E17+          GGTGGGACTGGGACCTCAAATTGTTGATGAAGAATCAATCATTGTTTAGCAAAGTGATTT
rJMSF042B20+          GGTGGGACTGGGACCTCAAATTGTTGATGAAGAATCAATCATTGTTTAGCAAAGTGATTT
                      ____________________________________________________________
consensus             GGTGGGACTGGGACCTCAAATTGTTGATGAAGAATCAATCATTGTTTAGCAAAGTGATTT
 
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rJMSF021E13+          TAGATCCTTGACATACACACCAAGAAATATC                             
rJMSF021E12+          TAGATCCTTGACATACACACCAAGAAATATC                             
rJMSF001E17+          TAGATCCTTGACATACACACCAAGAAATATCAATGTA                       
rJMSF042B20+          TAGATCCTTGACATACACACCAAGAAATATCAATGTATATTGAGACAGGCAGTAAAGATT
                      ____________________________________________________________
consensus             TAGATCCTTGACATACACACCAAGAAATATCAATGTATATTGAGACAGGCAGTAAAGATT
 
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rJMSF042B20+          AGCAACTGAATTGGTGAAAATGGAATTCTGTACATACAATTTCTCTGCATACCGAAAGTT
                      ____________________________________________________________
consensus             AGCAACTGAATTGGTGAAAATGGAATTCTGTACATACAATTTCTCTGCATACCGAAAGTT