Contig 011396:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF024O02+                                                                  CAAT
                      ____________________________________________________________
consensus                                                                     CAAT
 
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rJMSF024O02+          TTGCATATCTTGAGGAGCACTATGGAAAAGGTGGAGGAGTAGTTGTTGCCCCACCTGAGA
                      ____________________________________________________________
consensus             TTGCATATCTTGAGGAGCACTATGGAAAAGGTGGAGGAGTAGTTGTTGCCCCACCTGAGA
 
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rJMSF024O02+          GACAACAAGCNTCATCACTGCCAAGGCCATCTGTCTTGTATTCCAAAAATTGTGGCGGGC
                      ____________________________________________________________
consensus             GACAACAAGCNTCATCACTGCCAAGGCCATCTGTCTTGTATTCCAAAAATTGTGGCGGGC
 
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rJMSF024O02+          AAAATCCAGCAGACGTCACAAATGATTTCTNTAAATGTTCTATCAAACAAGGNGGCAATT
                      ____________________________________________________________
consensus             AAAATCCAGCAGACGTCACAAATGATTTCTNTAAATGTTCTATCAAACAAGGNGGCAATT
 
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rJMSF024O02+          CGGGGATACCCATCACAAGAATTCCTCTACAAGCTGTTCATGGTGGTTNGGGCAGGCGTG
                      ____________________________________________________________
consensus             CGGGGATACCCATCACAAGAATTCCTCTACAAGCTGTTCATGGTGGTTNGGGCAGGCGTG
 
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rJMSF024O02+          GAAGGGTTGTTAGTTCAACAACCACGGGGCATTATAACAGCTGTACAGCAGCAGCAGATG
rJMSF021G17+                       TTCAACAACCACGGGGCGTTATAACAGCTATACCGCAGCAGCAGATG
rJMSF017N23+                                    GGGCGTTATAACAGCTATACCGCAGCAGCAGATG
                      ____________________________________________________________
consensus             GAAGGGTTGTTAGTTCAACAACCACGGGGCGTTATAACAGCTATACCGCAGCAGCAGATG
 
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rJMSF024O02+          CCACTGAGCA-GCGAAGAATGGGTAGAAATATTCCACCACAATATGCTATTT--------
rJMSF021G17+          CNNNTGAGCAGGCGAAGAATGGGTAGAAATATTCCACCACAATATGCTATTTCTAATGCT
rJMSF017N23+          CCACTGAGCA-GCGAAGAATGGGTAGAAATATTCCACCACAATATGCTATTTCTAATGCT
                      ____________________________________________________________
consensus             CCACTGAGCA-GCGAAGAATGGGTAGAAATATTCCACCACAATATGCTATTTCTAATGCT
 
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rJMSF024O02+          -CTTCATATCCTAGGAGACATCCCAATTGTAAAAGTAAAAATGATGGGGGAGAAGAAGAT
rJMSF021G17+          GCTTCATATCCTAGGAGACACCCCAATTGTAAAAGTAAAAATGATGGGGGAGAAGAAGAT
rJMSF017N23+          GCTTCATATCCTAGGAGACACCCCAATTGTAAAAGTAAAAATGATGGGGGAGAAGAAGAT
rJMSF041P05+                                                       GGGGGAGAAGAAGAT
                      ____________________________________________________________
consensus             GCTTCATATCCTAGGAGACACCCCAATTGTAAAAGTAAAAATGATGGGGGAGAAGAAGAT
 
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rJMSF024O02+          GGCGGCCATGAGATATCCAACGGTGTGCAGCCTAAGCCAAGAAAAGTAGCTGCTGCAGCT
rJMSF021G17+          GGCGGCCATGAGATATCCAACGGTGTGCAGCCTAAACCAAGAAAAGTAGCTGCTGCAGCT
rJMSF017N23+          GGCGGCCATGAGATATCCAACGGTGTGCAGCCTAAACCAAGAAAAGTAGCTGCTGCAGCT
rJMSF041P05+          GGCGGCCATGAGATATCCAACGGTGTGCAGCCTAAACCAAGAAAAGTAGCTGCTGCAGCT
                      ____________________________________________________________
consensus             GGCGGCCATGAGATATCCAACGGTGTGCAGCCTAAACCAAGAAAAGTAGCTGCTGCAGCT
 
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rJMSF024O02+          CCTGGTGGATCTGGAAGCCAATGGTATTAAACAAACTTAATTGTCTGAATCTTAGAGCTG
rJMSF021G17+          CNTGGTGGATCTGGAAGCCAATGGTATTAAACAAACTTAATTGTCTGAATCTTAGAGCTG
rJMSF017N23+          CCTGGTGGATCTGGAAGCCAATGGTATTAAACAAACTTAATTGTCTGAATCTTAGAGCTG
rJMSF041P05+          CCTGGTGGATCTGGAAGCCAATGGTATTAAACAAACTTAATTGTCTGAATCTTAGAGCTG
                      ____________________________________________________________
consensus             CCTGGTGGATCTGGAAGCCAATGGTATTAAACAAACTTAATTGTCTGAATCTTAGAGCTG
 
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rJMSF024O02+          ATGATGATGAAGAAGAAGACATTGGAAAATTAAGATGGTTTACTCAAATCACTNTCCACT
rJMSF021G17+          ATGAAGAAGAAGAAGACG-----GGAAAATTAAGATGGTTTACTCAAATCACTTTCCACT
rJMSF017N23+          ATGAAGAAGAAGAAGACG-----GGAAAATTAAGATGGTTTACTCAAATCACTTTCCACT
rJMSF041P05+          ATGAAGAAGAAGAAGACG-----GGAAAATTAAGATGGTTTACTCAAATCACTTTCCACT
                      ____________________________________________________________
consensus             ATGAAGAAGAAGAAGACG-----GGAAAATTAAGATGGTTTACTCAAATCACTTTCCACT
 
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rJMSF024O02+          TTTTTATTAATTACTCCATTATATATATACCTGACAAGTTGCANGCTGGCTTGCAGA   
rJMSF021G17+          TGTTTNTTAATTACTCCNTTATATATATACCTGACAAGTTGCAGGCTGGCTTGCAGAGAG
rJMSF017N23+          TGTTTATTAATTACTCCATTATATATATACCTGACAAGTTGCAGGCTGGCTTGCAGAGAG
rJMSF041P05+          TGTTTATTAATTACTCCATTATATATATACCTGACAAGTTGCAGGCTGGCTTGCAGAGAG
                      ____________________________________________________________
consensus             TGTTTATTAATTACTCCATTATATATATACCTGACAAGTTGCAGGCTGGCTTGCAGAGAG
 
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rJMSF021G17+          CATTNTATTAGGTGTGTATTAACACTGCCACCATAAACAAAACCCCACAATATGCATGGA
rJMSF017N23+          CATTATATTAGGTGTGTATTAACACTGCCACCATAAACAAAACCCCACAATATGCATGGA
rJMSF041P05+          CATTATATTAGGTGTGTATTAACACTGCCACCATAAACAAAACCCCACAATATGCATGGA
                      ____________________________________________________________
consensus             CATTATATTAGGTGTGTATTAACACTGCCACCATAAACAAAACCCCACAATATGCATGGA
 
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rJMSF021G17+          AGTTTGGCAGTTGAACCAATTCTCTTTAGCTTCTTTATATCAAGCTAGAATGGGTTTTAC
rJMSF017N23+          AGTTTGGCAGTTGAACCAATTCTCTTTAGCTTCTTTATATCAAGCTAGAATGGGTTTTAC
rJMSF041P05+          AGTTTGGCAGTTGAACCAATTCTCTTTAGCTTCTTTATATCAAGCTAGAATGGGTTTTAC
                      ____________________________________________________________
consensus             AGTTTGGCAGTTGAACCAATTCTCTTTAGCTTCTTTATATCAAGCTAGAATGGGTTTTAC
 
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rJMSF021G17+          ATTCTCATCCATCACCATCACTGTTCTTCACCCAAGATCAAAGGGGAATTGAAGGCGTAA
rJMSF017N23+          ATTCTCATCCATCACCATCACTGTTCTTCACCCAAGATCAAAGGGGAATTGAAGGCGTAA
rJMSF041P05+          ATTCTCATCCATCACCATCACTGTTCTTCACCCAAGATCAAAGGGGAATTGAAGGCGTAA
                      ____________________________________________________________
consensus             ATTCTCATCCATCACCATCACTGTTCTTCACCCAAGATCAAAGGGGAATTGAAGGCGTAA
 
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rJMSF021G17+          AGAACAGACACACAGAAGAAGCGCGCAGGAAACTCGAGTAAGGGTTGAAGTTAAATTATT
rJMSF017N23+          AGAACAGACACACAGAAGAAGCGCGCAGGAAACTCGAGTAAGGGTTGAAGTTAAATTATT
rJMSF041P05+          AGAACAGACACACAGAAGAAGCGCGCAGGAAACTCGAGTAAGGGTTGAAGTTAAATTATT
                      ____________________________________________________________
consensus             AGAACAGACACACAGAAGAAGCGCGCAGGAAACTCGAGTAAGGGTTGAAGTTAAATTATT
 
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rJMSF021G17+          ATTTCCACCC-TTTTTTGCCAAAACAGTTGTAAGCTATAACTAATAGTTTGGTTCTAGTT
rJMSF017N23+          ATTTCCACCCTTTTTTTGCCAAAACAGTTGTAAGCTATAACTAATAGTTTGGTTCTAGTT
rJMSF041P05+          ATTTCCACCCTTTTTTTGCCAAAACAGTTGTAAGCTATAACTAATAGTTTGGTTCTAGTT
                      ____________________________________________________________
consensus             ATTTCCACCCTTTTTTTGCCAAAACAGTTGTAAGCTATAACTAATAGTTTGGTTCTAGTT
 
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rJMSF021G17+          AAGACACCTGAATCATTGTTGCTGTAAGCCTAC                           
rJMSF017N23+          AAGACACCTGAATCATTGTTGCTGTAAGCCTACAGGCTTAATATTGGCCTCGGG      
rJMSF041P05+          AAGACACCTGAATCATTGTTGCTGTAAGCCTACAGGCTTAATATTGGCCTCGGGGAGCTG
                      ____________________________________________________________
consensus             AAGACACCTGAATCATTGTTGCTGTAAGCCTACAGGCTTAATATTGGCCTCGGGGAGCTG