Contig 011394:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041L08Sequence107008018 (2)719011394 (2)ref|XP_009773235.1|9e-64PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform X2 [Nicotiana sylv
JMSF045I13Sequence127008018 (2)560011394 (2)ref|XP_009597876.1|5e-77PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform X2 [Nicotiana tome

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045I13+                                                            TGTCTTTGCT
                      ____________________________________________________________
consensus                                                               TGTCTTTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045I13+          GGACACATGCAAGCTGAGCATGCCCTTCAGAGAGATCGTCAGAACATGGGGAGGAGGTAT
rJMSF041L08+          GGACACATGCCAGCTGAGCATGCCCTTCAGAGAGATCGTCAGANCAT-GGGAGGAGGTAT
                      ____________________________________________________________
consensus             GGACACATGCCAGCTGAGCATGCCCTTCAGAGAGATCGTCAGAACATGGGGAGGAGGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045I13+          GTTGAAGTTTTCAGGTGCAAGAAACAGGATTACTATCAAGCTATATCTGCTGAGGTGAAG
rJMSF041L08+          GTTGAAGTTTTCAGGTGCAAGAAACAGGATTACTATCAAGCTATATCTGCTGAGGTGAAG
                      ____________________________________________________________
consensus             GTTGAAGTTTTCAGGTGCAAGAAACAGGATTACTATCAAGCTATATCTGCTGAGGTGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045I13+          GACACAGGTGTTGAAAATGATTACCACGGTTCTTCCCCTCCACATCGACCTAAGAGGACC
rJMSF041L08+          GACACAGGTGTTGAAAATGATTACCACGGTTCTTCCCCTCCACATCGACCTAAGAGGACC
                      ____________________________________________________________
consensus             GACACAGGTGTTGAAAATGATTACCACGGTTCTTCCCCTCCACATCGACCTAAGAGGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045I13+          CAGAACAAGGATCAGATGGAGTATACTGAGATATTGAAGTTGCGTGGGCTTCCATTCTCT
rJMSF041L08+          CAGAACAAGGATCAGATGGAGTATACTGAGATATTGAAGTTGCGTGGGCTTCCATTCTCT
                      ____________________________________________________________
consensus             CAGAACAAGGATCAGATGGAGTATACTGAGATATTGAAGTTGCGTGGGCTTCCATTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045I13+          GTAAAGAAAGCAGATATTATCAAGTTTTTCGGTGGGGATTTCAATTTGACAGACAACAAA
rJMSF041L08+          GTAAAGAAAGCAGATATTATCAAGTTTTTCGGTGGGGATTTCAATTTGACAGACAACAAA
                      ____________________________________________________________
consensus             GTAAAGAAAGCAGATATTATCAAGTTTTTCGGTGGGGATTTCAATTTGACAGACAACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045I13+          GTTCACATTGCATACCGACCTGATGGGAAGGCTACTGGAGAGGCATATGTAGAATTTCCC
rJMSF041L08+          GTTCACATTGCATACCGACCTGATGGGAAGGCTACTGGAGAGGCATATGTAGAATTTCCC
                      ____________________________________________________________
consensus             GTTCACATTGCATACCGACCTGATGGGAAGGCTACTGGAGAGGCATATGTAGAATTTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045I13+          TCATCTGAGGAGGCCAAGAATGCCATGTGCAAGGACAATATGATGATCGGATCAAGATAC
rJMSF041L08+          TCATCTGAGGAGGCCAAGAATGCCATGTGCAAGGACAATATGATGATCGGATCAAGATAC
                      ____________________________________________________________
consensus             TCATCTGAGGAGGCCAAGAATGCCATGTGCAAGGACAATATGATGATCGGATCAAGATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045I13+          ATCGAGCTATTTCCTTCAAGTCAGGATGAATCAAGGAGAGCCGAGTCTAGGTCAAGACAG
rJMSF041L08+          ATCGAGCTATTTCCTTCAAGTCAGGATGAATCAAGGAGAGCCGAGTCTAGGTCAAGACAG
                      ____________________________________________________________
consensus             ATCGAGCTATTTCCTTCAAGTCAGGATGAATCAAGGAGAGCCGAGTCTAGGTCAAGACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045I13+          TAATGCCGAGGTCTCTCAAATGGAGTAATATGAAATCTTTTTATTGCTCAAAAGCCATTT
rJMSF041L08+          TAATGCCGAGGTCTCTCAAATGGAGTAATATGAAATCTTTTTATTGCTCAAAAGCCATTT
                      ____________________________________________________________
consensus             TAATGCCGAGGTCTCTCAAATGGAGTAATATGAAATCTTTTTATTGCTCAAAAGCCATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045I13+          AGTGCTTTCT                                                  
rJMSF041L08+          AGTGCTTTCTTTTTGGGGCTGACCTTTCAGCATTTGTTAAAAATTTACCATTCCCATGTT
                      ____________________________________________________________
consensus             AGTGCTTTCTTTTTGGGGCTGACCTTTCAGCATTTGTTAAAAATTTACCATTCCCATGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041L08+          TGGTGGATTTTATTACTGTATTTCCTAAAGACAAGTGTAGTATTTTTATAGAAAATTCAG
                      ____________________________________________________________
consensus             TGGTGGATTTTATTACTGTATTTCCTAAAGACAAGTGTAGTATTTTTATAGAAAATTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041L08+          TAAACTCCTGGATATGTAGGTTTGGTTAACTTGCTGCAGCTTTGCTGTTTTCTCCAGTTA
                      ____________________________________________________________
consensus             TAAACTCCTGGATATGTAGGTTTGGTTAACTTGCTGCAGCTTTGCTGTTTTCTCCAGTTA