Contig 011392:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040P04Sequence702011392 (2)ref|XP_006346399.1|5e-84PREDICTED: U-box domain-containing protein 26-like [Solanum tuberosum]857011392 (2)ref|XP_004230770.1|2e-125PREDICTED: U-box domain-containing protein 26-like [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF040P04-                                                                    GGA
                      ____________________________________________________________
consensus                                                                      GGA
 
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JMSF040P04-           GAAAAGCCCCCAACGGCCTGCTTAGTTTGTCCCTCTGTTCCTCTCTCCGTATAGCACACC
                      ____________________________________________________________
consensus             GAAAAGCCCCCAACGGCCTGCTTAGTTTGTCCCTCTGTTCCTCTCTCCGTATAGCACACC
 
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JMSF040P04-           CTTTGCTTTTCCCCGACGAAGTTGAACACGGCTTAAAAACTCTAGAGCCAAGCAATACAG
                      ____________________________________________________________
consensus             CTTTGCTTTTCCCCGACGAAGTTGAACACGGCTTAAAAACTCTAGAGCCAAGCAATACAG
 
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JMSF040P04-           ATACAAATAGACAGAAAGAAAGACAGAGGGAGAGAAGAAACATGCCTGCAAGCTTAGACC
                      ____________________________________________________________
consensus             ATACAAATAGACAGAAAGAAAGACAGAGGGAGAGAAGAAACATGCCTGCAAGCTTAGACC
 
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JMSF040P04-           CATTGGATGTGGGGGGGATTCAGATCCCTTACCATTTCCGGTGTCCGATCTCTCTGGAGC
                      ____________________________________________________________
consensus             CATTGGATGTGGGGGGGATTCAGATCCCTTACCATTTCCGGTGTCCGATCTCTCTGGAGC
 
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JMSF040P04-           TTATGCGAGATCCGGTGACCGTTTGTACCGGTCAGACGTACGACAGAGCAAGCATAGAGT
                      ____________________________________________________________
consensus             TTATGCGAGATCCGGTGACCGTTTGTACCGGTCAGACGTACGACAGAGCAAGCATAGAGT
 
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JMSF040P04-           CTTGGGTGGCCACCGGTAATACGACGTGTCCGGTTACGAGAGCGCCTTTGACGGATTTTA
                      ____________________________________________________________
consensus             CTTGGGTGGCCACCGGTAATACGACGTGTCCGGTTACGAGAGCGCCTTTGACGGATTTTA
 
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JMSF040P04-           CTCTCATACCAAACCATACTCTCCGACGGCTCATCCAGGAGTGGTGCGTAGCGAACCGCG
                      ____________________________________________________________
consensus             CTCTCATACCAAACCATACTCTCCGACGGCTCATCCAGGAGTGGTGCGTAGCGAACCGCG
 
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JMSF040P04-           CCTTCGGTGTGGAGCGCATTCCTACGCCGAAGCAGCCTGCTGACCCGGGTTTGGTCCAGT
                      ____________________________________________________________
consensus             CCTTCGGTGTGGAGCGCATTCCTACGCCGAAGCAGCCTGCTGACCCGGGTTTGGTCCAGT
 
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JMSF040P04-           CCCTGTTGAGCCAAGCCTCGTCCGTGTCCAGTCATTTGAATTCCAGGCTTTCTGCACTGA
                      ____________________________________________________________
consensus             CCCTGTTGAGCCAAGCCTCGTCCGTGTCCAGTCATTTGAATTCCAGGCTTTCTGCACTGA
 
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JMSF040P04-           GGAGACTCAGAGGACTAGCTCGTGACTCGGATAAGAACCGGTCCGTGATTTCGGCGAATA
                      ____________________________________________________________
consensus             GGAGACTCAGAGGACTAGCTCGTGACTCGGATAAGAACCGGTCCGTGATTTCGGCGAATA
 
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JMSF040P04-           ACGCGCGCCAAGTTCTGCTCTCAATCGTGTTCTCCAATATGGATTCGAATTCGTCCGAGT
rJMSF040P04+                                                        GAATTCGTCCGAGT
                      ____________________________________________________________
consensus             ACGCGCGCCAAGTTCTGCTCTCAATCGTGTTCTCCAATATGGATTCGAATTCGTCCGAGT
 
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JMSF040P04-           TAACTCACGAGGCGCTCTCGATTTTATCGATGTTCCAGC                     
rJMSF040P04+          TAACTCACGAGGCGCTCTCGATTTTATCGATGTTCCAGCTCTCGGAGGCGGAGTGCGTCT
                      ____________________________________________________________
consensus             TAACTCACGAGGCGCTCTCGATTTTATCGATGTTCCAGCTCTCGGAGGCGGAGTGCGTCT
 
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rJMSF040P04+          TCGTAGCTTCCGATCTGGACCGAGTCGGATACCTCGTGTCTCTGCTCTCTCATCCTTCGA
                      ____________________________________________________________
consensus             TCGTAGCTTCCGATCTGGACCGAGTCGGATACCTCGTGTCTCTGCTCTCTCATCCTTCGA
 
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rJMSF040P04+          TAGATGTTCGAGTTAACTCAGCTGCGTTGATAGAGTCCGTCGTCGCCGGAACGAAATCGC
                      ____________________________________________________________
consensus             TAGATGTTCGAGTTAACTCAGCTGCGTTGATAGAGTCCGTCGTCGCCGGAACGAAATCGC
 
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rJMSF040P04+          CAGAACTACGATCTCAAATCAGCAATGCCGACGAAATCTTCCAAGGAATAGTCGGAATTC
                      ____________________________________________________________
consensus             CAGAACTACGATCTCAAATCAGCAATGCCGACGAAATCTTCCAAGGAATAGTCGGAATTC
 
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rJMSF040P04+          TCAATCATCCGTCGACACATCCGAGAGCCTTGAAAATGGGAGTAAAGGCGCTGTTCGCCC
                      ____________________________________________________________
consensus             TCAATCATCCGTCGACACATCCGAGAGCCTTGAAAATGGGAGTAAAGGCGCTGTTCGCCC
 
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rJMSF040P04+          TGTGCTTGGTGAAACAACACCGGCAAAAGGCGGTTATCGCGGGAGCAGTGGAAGCGTTGA
                      ____________________________________________________________
consensus             TGTGCTTGGTGAAACAACACCGGCAAAAGGCGGTTATCGCGGGAGCAGTGGAAGCGTTGA
 
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rJMSF040P04+          TAGAGAGGTTGCAATACTTGGAAAAGTGCGACACCGAACGAGCGCTGGCCACGGTGGAGC
                      ____________________________________________________________
consensus             TAGAGAGGTTGCAATACTTGGAAAAGTGCGACACCGAACGAGCGCTGGCCACGGTGGAGC
 
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rJMSF040P04+          TCCTCTGCCGGATTCCGTCCGGATGCGCGGCGTTCGCCGCCCACGCGCTGACCGTCCCGC
                      ____________________________________________________________
consensus             TCCTCTGCCGGATTCCGTCCGGATGCGCGGCGTTCGCCGCCCACGCGCTGACCGTCCCGC
 
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rJMSF040P04+          TCCTCGTCAAAATCATCCTGAAGATCTCGGACCGAGCAACAGAGTACGCCGCTGGAGCTC
                      ____________________________________________________________
consensus             TCCTCGTCAAAATCATCCTGAAGATCTCGGACCGAGCAACAGAGTACGCCGCTGGAGCTC
 
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rJMSF040P04+          TCCTCTCGCTTTGCTCCTCCTCCGAACAAGCTCAGCGCGACGCCGTGGCCGCCGGCGTAT
                      ____________________________________________________________
consensus             TCCTCTCGCTTTGCTCCTCCTCCGAACAAGCTCAGCGCGACGCCGTGGCCGCCGGCGTAT
 
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rJMSF040P04+          TGACTCAATTACTACTGCTCGTCCAGAGCGGCTGCACAGAGCGAGCGAAACGGAAAGCGC
                      ____________________________________________________________
consensus             TGACTCAATTACTACTGCTCGTCCAGAGCGGCTGCACAGAGCGAGCGAAACGGAAAGCGC
 
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rJMSF040P04+          AAATGCTTTTGAAACTGCTCCGCGATTGTTGGCCCGACGATTCCATTGTAAATTCAGATG
                      ____________________________________________________________
consensus             AAATGCTTTTGAAACTGCTCCGCGATTGTTGGCCCGACGATTCCATTGTAAATTCAGATG
 
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rJMSF040P04+          ATTTTGCTCGCAGCGACGTCGTTCAGTTTTTACGATAGACCAATTACCATTTACCAATAC
                      ____________________________________________________________
consensus             ATTTTGCTCGCAGCGACGTCGTTCAGTTTTTACGATAGACCAATTACCATTTACCAATAC
 
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rJMSF040P04+          CCCTTTTTGTAATTTCAGGTAAAAATTTAAACCGTCAAAAACAAAAAACTACCGACTATA
                      ____________________________________________________________
consensus             CCCTTTTTGTAATTTCAGGTAAAAATTTAAACCGTCAAAAACAAAAAACTACCGACTATA