Contig 011390:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030K10Sequence648009406 (6)ref|XP_006350963.1|2e-16PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Solanum tu756011390 (2)ref|XP_006350963.1|1e-23PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Solanum tu
JMSF040E20Sequence680009406 (6)ref|XP_006350963.1|2e-19PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Solanum tu862011390 (2)ref|XP_011099741.1|2e-23PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Sesamum in

Alignment

This contig is upended


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rJMSF040E20+                                              CCAGTGAAGCAAAAAGTTTTATAA
                      ____________________________________________________________
consensus                                                 CCAGTGAAGCAAAAAGTTTTATAA
 
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rJMSF040E20+          GGNTATGCTTGCAGCGAGAGCCATCAGCACGACCCACAGCATCACAACTTCTGGATCACC
                      ____________________________________________________________
consensus             GGNTATGCTTGCAGCGAGAGCCATCAGCACGACCCACAGCATCACAACTTCTGGATCACC
 
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rJMSF030K10+                                            CCCATCGTAATGTAATCAATGAAGTA
rJMSF040E20+          CTTTCATTAAAGACCAAAACACATCAAAAGTTGCCCCATCGTAATGTAATCAATGAAGTA
                      ____________________________________________________________
consensus             CTTTCATTAAAGACCAAAACACATCAAAAGTTGCCCCATCGTAATGTAATCAATGAAGTA
 
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rJMSF030K10+          CAACCTCGGAGCTTTGATGGGAGCTGTACACCGCCGGCGGCCCTGGAGCTGCTGCATCCT
rJMSF040E20+          CAACCTCGGAGCTTTGATGGGAGCTGTACACCGCCGGCGGCCCTGGAGCTGCTGCATCCT
                      ____________________________________________________________
consensus             CAACCTCGGAGCTTTGATGGGAGCTGTACACCGCCGGCGGCCCTGGAGCTGCTGCATCCT
 
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rJMSF030K10+          AGCCAAAGAAATTTTGCTTCTCTTGATGGAGACTACGCAGTGAACCACATGGTAAATGTG
rJMSF040E20+          AGCCAAAGAAATTTTGCTTCTCTTGATGGAGACTACGCAGTGAACCACATGGTAAATGTG
                      ____________________________________________________________
consensus             AGCCAAAGAAATTTTGCTTCTCTTGATGGAGACTACGCAGTGAACCACATGGTAAATGTG
 
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rJMSF030K10+          TTTAGACCCATGATTAGTTCAAGAGACAATGCAAAAACCATTACGTCTTCATTGCCTGTA
rJMSF040E20+          TTTAGACCCATGATTAGTTCAAGAGACAATGCAAAAACCATTACGTCTTCATTGCCTGTA
                      ____________________________________________________________
consensus             TTTAGACCCATGATTAGTTCAAGAGACAATGCAAAAACCATTACGTCTTCATTGCCTGTA
 
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rJMSF030K10+          TCACCATGTTCAAGTCCTCTAAGACGACATAGTGAAGAAGCACGCAGGAGCTGTTATCTT
rJMSF040E20+          TCACCATGTTCAAGTCCTCTAAGACGACATAGTGAAGAAGCACGCAGGAGCTGTTATCTT
                      ____________________________________________________________
consensus             TCACCATGTTCAAGTCCTCTAAGACGACATAGTGAAGAAGCACGCAGGAGCTGTTATCTT
 
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rJMSF030K10+          TCTCCTCCAAACCCATCATCTTATCATCCTTTCGCCACCACCCAATTTGGAAACAACCAT
rJMSF040E20+          TCTCCTCCAAACCCATCATCTTATCATCCTTTCGCCACCACCCAATTTGGAAACAACCAT
                      ____________________________________________________________
consensus             TCTCCTCCAAACCCATCATCTTATCATCCTTTCGCCACCACCCAATTTGGAAACAACCAT
 
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rJMSF030K10+          CCCGACTACTCCTCAACCTTTGCAGCAAGAGTCAACACAAGGAACACACTGGATCCATGG
rJMSF040E20+          CCCGACTACTCCTCAACCTTTGCAGCAAGAGTCAACACAAGGAA--CACTGGATCCATGG
                      ____________________________________________________________
consensus             CCCGACTACTCCTCAACCTTTGCAGCAAGAGTCAACACAAGGAACACACTGGATCCATGG
 
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rJMSF030K10+          CTTGATATTCCTCAATATAGAACACAAACACCTGGTAGATCTTCAACAAGAACAATGCCC
rJMSF040E20+          CTTGATATTCCTCAATATAGAACACAAACACCTGGTAGATCTTCAACAAGAACAATGCCC
                      ____________________________________________________________
consensus             CTTGATATTCCTCAATATAGAACACAAACACCTGGTAGATCTTCAACAAGAACAATGCCC
 
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rJMSF030K10+          ATTCTCTAGTTAGGAAAACTTTCCATCCTCTGATCCAACCAAGATTGCCACTACAGTTTG
rJMSF040E20+          ATTCTCTAGTTAGGAAAACTTTCCATCCTCTGATCCAACCAAGATTGCCACTACAGTTTG
                      ____________________________________________________________
consensus             ATTCTCTAGTTAGGAAAACTTTCCATCCTCTGATCCAACCAAGATTGCCACTACAGTTTG
 
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rJMSF030K10+          AAGCGCAACGAATCAACTGCAATGTTGCATTCGATTCAGGGTACTTCTAACTAACTACTG
rJMSF040E20+          AAGCGCAACGAATCAACTGCAATGTTGCATTCGATTCAGGGTACTTCTAACTAACTACTG
                      ____________________________________________________________
consensus             AAGCGCAACGAATCAACTGCAATGTTGCATTCGATTCAGGGTACTTCTAACTAACTACTG
 
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rJMSF030K10+          CTGTGTTTTCCCCTCTTGTTTGTTGGTGAGTGGGCAATTTTGGATGATCAGATCAGTCTT
rJMSF040E20+          CTGTGTTTTCCCCTCTTGTTTGTTGGTGAGTGGGCAATTTTGGATGATCAGATCAGTCTT
                      ____________________________________________________________
consensus             CTGTGTTTTCCCCTCTTGTTTGTTGGTGAGTGGGCAATTTTGGATGATCAGATCAGTCTT
 
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rJMSF030K10+          CTTCAGTTGCAGCAATTCACCATCCCACTGGCTACTATCTTGGGTATATATTATATAATA
rJMSF040E20+          CTTCAGTTGCAGCAATTCACCATCCCACTGGCTACTATCTTGGGTATATATTATATAATA
                      ____________________________________________________________
consensus             CTTCAGTTGCAGCAATTCACCATCCCACTGGCTACTATCTTGGGTATATATTATATAATA
 
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rJMSF030K10+          ATTGTATTGTGTATGTAAATTATACTTTTTCTTCTCTGAAATGTAAATGAAAGATGA   
rJMSF040E20+          ATTGTATTGTGTATGTAAATTATACTTTTTCTTCTCTGAAATGTAAATGAAAGATGACAC
                      ____________________________________________________________
consensus             ATTGTATTGTGTATGTAAATTATACTTTTTCTTCTCTGAAATGTAAATGAAAGATGACAC