Contig 011388:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009I06Sequence358016708gb|AIF28392.1|1e-47PIN-like protein, partial [Torreya nucifera]576011388 (3)ref|XP_009785136.1|4e-62PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Nicotiana syl
JMSF027E14Sequence656005121 (2)ref|NP_001234220.1|9e-109auxin efflux facilitator SlPIN9 [Solanum lycopersicum] dbj|BAJ09454.1| auxin eff704011388 (3)gb|AIF28293.1|1e-88PIN-like protein, partial [Persea borbonia]
JMSF039N22Sequence663005121 (2)ref|NP_001234220.1|2e-112auxin efflux facilitator SlPIN9 [Solanum lycopersicum] dbj|BAJ09454.1| auxin eff778011388 (3)gb|AIF28293.1|3e-90PIN-like protein, partial [Persea borbonia]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF039N22+ AAGCCTGCAGCTATGCCTCCTGCAAGTGTCATGACCAAACTCATTATGAGTATGGTGT
                      ____________________________________________________________
consensus AAGCCTGCAGCTATGCCTCCTGCAAGTGTCATGACCAAACTCATTATGAGTATGGTGT
 
. : . : . : . : . : . :
rJMSF027E14+ TAGGAACCCGAATACTTACTCCAGCCTCTTTGGCATTGTTTGGTCTT
rJMSF039N22+ GGCGGAAGCTTATTAGGAACCCGAATACTTACTCCAGCCTCTTTGGCATTGTTTGGTCTT
                      ____________________________________________________________
consensus GGCGGAAGCTTATTAGGAACCCGAATACTTACTCCAGCCTCTTTGGCATTGTTTGGTCTT
 
. : . : . : . : . : . :
rJMSF027E14+ TGGTCTCGTTCAAATGGCATGTTGAGATGCCTGCGATTGTGGCCAAATCGATAGCTATTC
rJMSF039N22+ TGGTCTCGTTCAAATGGCATGTTGAGATGCCTGCGATTGTGGCCAAATCGATAGCTATTC
                      ____________________________________________________________
consensus TGGTCTCGTTCAAATGGCATGTTGAGATGCCTGCGATTGTGGCCAAATCGATAGCTATTC
 
. : . : . : . : . : . :
rJMSF009I06+ TCGGATGCTGGTCTTGGAATGGCAATGTTTAGTCTTGGTTTATTCATGGCATTGCAGC
rJMSF027E14+ TGTCGGATGCTGGTCTTGGAATGGCAATGTTTAGTCTTGGTTTATTCATGGCATTGCAGC
rJMSF039N22+ TGTCGGATGCTGGTCTTGGAATGGCAATGTTTAGTCTTGGTTTATTCATGGCATTGCAGC
                      ____________________________________________________________
consensus TGTCGGATGCTGGTCTTGGAATGGCAATGTTTAGTCTTGGTTTATTCATGGCATTGCAGC
 
. : . : . : . : . : . :
rJMSF009I06+ CTAGAATGATTGCCTGTGGGAAAACAGTTGCTTCCTTCTCCATGGCTATAAGGTTCATTN
rJMSF027E14+ CTAGAATGATTGCCTGTGGGAAAACAGTTGCTTCCTTCTCCATGGCTATAAGGTTCATTA
rJMSF039N22+ CTAGAATGATTGCCTGTGGGAAAACAGTTGCTTCCTTCTCCATGGCTATAAGGTTCATTA
                      ____________________________________________________________
consensus CTAGAATGATTGCCTGTGGGAAAACAGTTGCTTCCTTCTCCATGGCTATAAGGTTCATTA
 
. : . : . : . : . : . :
rJMSF009I06+ CCGGNCCTGCTGTCATGGCTGNTGCTTCCATTGCAGNTGGCCTTCGAGGCGTCCTCCTGC
rJMSF027E14+ CTGGACCTGCTGTCATGGCTGCTGCTTCCATTGCAGTTGGCCTTCGAGGCGTCCTCCTGC
rJMSF039N22+ CTGGACCTGCTGTCATGGCTGCTGCTTCCNTTGCAGTTGGCCTTCGAGGCGTCCTCCTGC
                      ____________________________________________________________
consensus CTGGACCTGCTGTCATGGCTGCTGCTTCCATTGCAGTTGGCCTTCGAGGCGTCCTCCTGC
 
. : . : . : . : . : . :
rJMSF009I06+ ACATCGCGATTGTTCAGGCAGCCCTACCCCAAGGTATTGTTCCCTTTGTGTTTGCCAAGG
rJMSF027E14+ ACATCGCGATTGTTCAGGCAGCCCTACCCCAAGGTATTGTTCCCTTTGTGTTTGCCAAGG
rJMSF039N22+ ACATCGCGATTGTTCAGGCAGCCCTACCCCAAGGTATTGTTCCCTTTGTGTTTGCCAAGG
                      ____________________________________________________________
consensus ACATCGCGATTGTTCAGGCAGCCCTACCCCAAGGTATTGTTCCCTTTGTGTTTGCCAAGG
 
. : . : . : . : . : . :
rJMSF009I06+ AATACAATGTCCATCCTGATATCCTCAGCACTGGAGTGATATTTGGGATGTTAGTAGCTC
rJMSF027E14+ AATACAATGTCCATCCTGATATCCTCAGCACTGGAGTGATATTTGGGATGTTAGTAGCTC
rJMSF039N22+ AATACAATGTCCATCCTGATATCCTCAGCNCTGGAGTGATATTTGGGATGTTAGTAGCTC
                      ____________________________________________________________
consensus AATACAATGTCCATCCTGATATCCTCAGCACTGGAGTGATATTTGGGATGTTAGTAGCTC
 
. : . : . : . : . : . :
rJMSF009I06+ TACCCGTCACTTTGGTNTACTACATCTTGCTGGGACTTTGAAGCAGAAGTTGAAAAACAA
rJMSF027E14+ TACCCGTCACTTTGGTATACTACATCTTGCTGGGACTTTGAAGCAGAAGTTGAAAAACAA
rJMSF039N22+ TACCCGTCNCTTTGGTATACTACATCTTGCTGGGACTTTGAAGCNGAAGTTGAAAAACAA
                      ____________________________________________________________
consensus TACCCGTCACTTTGGTATACTACATCTTGCTGGGACTTTGAAGCAGAAGTTGAAAAACAA
 
. : . : . : . : . : . :
rJMSF009I06+ AACCATAGTAAAAAAAAAG--AAAAAAAGATGAGACCACATCTTTAAGGCCATATTTTGG
rJMSF027E14+ AACCATAGTAAAAAAAAAG-AAAAAAAAGATGAGACCACATCTTTAAGGCCATATTTTGG
rJMSF039N22+ AACCNTAGTAAAAAAAAAGAAAAAAAAAGATGAGACCACATCTTTAAGGCCATATTTTGG
                      ____________________________________________________________
consensus AACCATAGTAAAAAAAAAG-AAAAAAAAGATGAGACCACATCTTTAAGGCCATATTTTGG
 
. : . : . : . : . : . :
rJMSF009I06+ CCTCTAACAGAACAGTAGAAGAATTATGGATACCAGAGAGGAGAAAGTAGAAAGAATGGC
rJMSF027E14+ CCTCTAACAGAACAGTAGAAGAATTATGGATACCAGAGAGGAGAAAGTAGAAAGAATGGC
rJMSF039N22+ CCTCTAACAGAACAGTAGAAGAATTATGGATACCAGAGAGGAGAAAGTAGAAAGAATGGC
                      ____________________________________________________________
consensus CCTCTAACAGAACAGTAGAAGAATTATGGATACCAGAGAGGAGAAAGTAGAAAGAATGGC
 
. : . : . : . : . : . :
rJMSF009I06+ AGAAATAGAGAAGANGATGATGTAGCAAAGTGGGAAGGCAGCTAGTAGAATATTATTTTT
rJMSF027E14+ AGAAATAGAGAAGATGATGATGTAGCAAAGTGGGAAGGCAGCTAGTAGAATATTATTTTT
rJMSF039N22+ AGAAATAGAGAAGATGATGATGTAGCAAAGTGGGAAGGCAGCTAGTAGAATATTATTTTT
                      ____________________________________________________________
consensus AGAAATAGAGAAGATGATGATGTAGCAAAGTGGGAAGGCAGCTAGTAGAATATTATTTTT
 
. : . : . : . : . : . :
rJMSF009I06+ GTTGCTTTTTATTTTTTTTGTCTTCNTTTTTT
rJMSF027E14+ GTTGCTTTTTATTTTTTTTGTCTTCTTTTTTTTATTTCTTATTCTGAAA
rJMSF039N22+ GTTGCTTTTTATTTTTTTTGTCTTCTTTTTTTTATTTCTTATTCTGAAANCCCTGTGGCT
                      ____________________________________________________________
consensus GTTGCTTTTTATTTTTTTTGTCTTCTTTTTTTTATTTCTTATTCTGAAANCCCTGTGGCT