| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF009I06 | Sequence | 358 | 016708 | gb|AIF28392.1| | 1e-47 | PIN-like protein, partial [Torreya nucifera] | 576 | 011388 (3) | ref|XP_009785136.1| | 4e-62 | PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Nicotiana syl |
| JMSF027E14 | Sequence | 656 | 005121 (2) | ref|NP_001234220.1| | 9e-109 | auxin efflux facilitator SlPIN9 [Solanum lycopersicum] dbj|BAJ09454.1| auxin eff | 704 | 011388 (3) | gb|AIF28293.1| | 1e-88 | PIN-like protein, partial [Persea borbonia] |
| JMSF039N22 | Sequence | 663 | 005121 (2) | ref|NP_001234220.1| | 2e-112 | auxin efflux facilitator SlPIN9 [Solanum lycopersicum] dbj|BAJ09454.1| auxin eff | 778 | 011388 (3) | gb|AIF28293.1| | 3e-90 | PIN-like protein, partial [Persea borbonia] |
This contig is upended
. : . : . : . : . : . :
rJMSF039N22+ AAGCCTGCAGCTATGCCTCCTGCAAGTGTCATGACCAAACTCATTATGAGTATGGTGT
____________________________________________________________
consensus AAGCCTGCAGCTATGCCTCCTGCAAGTGTCATGACCAAACTCATTATGAGTATGGTGT
. : . : . : . : . : . :
rJMSF027E14+ TAGGAACCCGAATACTTACTCCAGCCTCTTTGGCATTGTTTGGTCTT
rJMSF039N22+ GGCGGAAGCTTATTAGGAACCCGAATACTTACTCCAGCCTCTTTGGCATTGTTTGGTCTT
____________________________________________________________
consensus GGCGGAAGCTTATTAGGAACCCGAATACTTACTCCAGCCTCTTTGGCATTGTTTGGTCTT
. : . : . : . : . : . :
rJMSF027E14+ TGGTCTCGTTCAAATGGCATGTTGAGATGCCTGCGATTGTGGCCAAATCGATAGCTATTC
rJMSF039N22+ TGGTCTCGTTCAAATGGCATGTTGAGATGCCTGCGATTGTGGCCAAATCGATAGCTATTC
____________________________________________________________
consensus TGGTCTCGTTCAAATGGCATGTTGAGATGCCTGCGATTGTGGCCAAATCGATAGCTATTC
. : . : . : . : . : . :
rJMSF009I06+ TCGGATGCTGGTCTTGGAATGGCAATGTTTAGTCTTGGTTTATTCATGGCATTGCAGC
rJMSF027E14+ TGTCGGATGCTGGTCTTGGAATGGCAATGTTTAGTCTTGGTTTATTCATGGCATTGCAGC
rJMSF039N22+ TGTCGGATGCTGGTCTTGGAATGGCAATGTTTAGTCTTGGTTTATTCATGGCATTGCAGC
____________________________________________________________
consensus TGTCGGATGCTGGTCTTGGAATGGCAATGTTTAGTCTTGGTTTATTCATGGCATTGCAGC
. : . : . : . : . : . :
rJMSF009I06+ CTAGAATGATTGCCTGTGGGAAAACAGTTGCTTCCTTCTCCATGGCTATAAGGTTCATTN
rJMSF027E14+ CTAGAATGATTGCCTGTGGGAAAACAGTTGCTTCCTTCTCCATGGCTATAAGGTTCATTA
rJMSF039N22+ CTAGAATGATTGCCTGTGGGAAAACAGTTGCTTCCTTCTCCATGGCTATAAGGTTCATTA
____________________________________________________________
consensus CTAGAATGATTGCCTGTGGGAAAACAGTTGCTTCCTTCTCCATGGCTATAAGGTTCATTA
. : . : . : . : . : . :
rJMSF009I06+ CCGGNCCTGCTGTCATGGCTGNTGCTTCCATTGCAGNTGGCCTTCGAGGCGTCCTCCTGC
rJMSF027E14+ CTGGACCTGCTGTCATGGCTGCTGCTTCCATTGCAGTTGGCCTTCGAGGCGTCCTCCTGC
rJMSF039N22+ CTGGACCTGCTGTCATGGCTGCTGCTTCCNTTGCAGTTGGCCTTCGAGGCGTCCTCCTGC
____________________________________________________________
consensus CTGGACCTGCTGTCATGGCTGCTGCTTCCATTGCAGTTGGCCTTCGAGGCGTCCTCCTGC
. : . : . : . : . : . :
rJMSF009I06+ ACATCGCGATTGTTCAGGCAGCCCTACCCCAAGGTATTGTTCCCTTTGTGTTTGCCAAGG
rJMSF027E14+ ACATCGCGATTGTTCAGGCAGCCCTACCCCAAGGTATTGTTCCCTTTGTGTTTGCCAAGG
rJMSF039N22+ ACATCGCGATTGTTCAGGCAGCCCTACCCCAAGGTATTGTTCCCTTTGTGTTTGCCAAGG
____________________________________________________________
consensus ACATCGCGATTGTTCAGGCAGCCCTACCCCAAGGTATTGTTCCCTTTGTGTTTGCCAAGG
. : . : . : . : . : . :
rJMSF009I06+ AATACAATGTCCATCCTGATATCCTCAGCACTGGAGTGATATTTGGGATGTTAGTAGCTC
rJMSF027E14+ AATACAATGTCCATCCTGATATCCTCAGCACTGGAGTGATATTTGGGATGTTAGTAGCTC
rJMSF039N22+ AATACAATGTCCATCCTGATATCCTCAGCNCTGGAGTGATATTTGGGATGTTAGTAGCTC
____________________________________________________________
consensus AATACAATGTCCATCCTGATATCCTCAGCACTGGAGTGATATTTGGGATGTTAGTAGCTC
. : . : . : . : . : . :
rJMSF009I06+ TACCCGTCACTTTGGTNTACTACATCTTGCTGGGACTTTGAAGCAGAAGTTGAAAAACAA
rJMSF027E14+ TACCCGTCACTTTGGTATACTACATCTTGCTGGGACTTTGAAGCAGAAGTTGAAAAACAA
rJMSF039N22+ TACCCGTCNCTTTGGTATACTACATCTTGCTGGGACTTTGAAGCNGAAGTTGAAAAACAA
____________________________________________________________
consensus TACCCGTCACTTTGGTATACTACATCTTGCTGGGACTTTGAAGCAGAAGTTGAAAAACAA
. : . : . : . : . : . :
rJMSF009I06+ AACCATAGTAAAAAAAAAG--AAAAAAAGATGAGACCACATCTTTAAGGCCATATTTTGG
rJMSF027E14+ AACCATAGTAAAAAAAAAG-AAAAAAAAGATGAGACCACATCTTTAAGGCCATATTTTGG
rJMSF039N22+ AACCNTAGTAAAAAAAAAGAAAAAAAAAGATGAGACCACATCTTTAAGGCCATATTTTGG
____________________________________________________________
consensus AACCATAGTAAAAAAAAAG-AAAAAAAAGATGAGACCACATCTTTAAGGCCATATTTTGG
. : . : . : . : . : . :
rJMSF009I06+ CCTCTAACAGAACAGTAGAAGAATTATGGATACCAGAGAGGAGAAAGTAGAAAGAATGGC
rJMSF027E14+ CCTCTAACAGAACAGTAGAAGAATTATGGATACCAGAGAGGAGAAAGTAGAAAGAATGGC
rJMSF039N22+ CCTCTAACAGAACAGTAGAAGAATTATGGATACCAGAGAGGAGAAAGTAGAAAGAATGGC
____________________________________________________________
consensus CCTCTAACAGAACAGTAGAAGAATTATGGATACCAGAGAGGAGAAAGTAGAAAGAATGGC
. : . : . : . : . : . :
rJMSF009I06+ AGAAATAGAGAAGANGATGATGTAGCAAAGTGGGAAGGCAGCTAGTAGAATATTATTTTT
rJMSF027E14+ AGAAATAGAGAAGATGATGATGTAGCAAAGTGGGAAGGCAGCTAGTAGAATATTATTTTT
rJMSF039N22+ AGAAATAGAGAAGATGATGATGTAGCAAAGTGGGAAGGCAGCTAGTAGAATATTATTTTT
____________________________________________________________
consensus AGAAATAGAGAAGATGATGATGTAGCAAAGTGGGAAGGCAGCTAGTAGAATATTATTTTT
. : . : . : . : . : . :
rJMSF009I06+ GTTGCTTTTTATTTTTTTTGTCTTCNTTTTTT
rJMSF027E14+ GTTGCTTTTTATTTTTTTTGTCTTCTTTTTTTTATTTCTTATTCTGAAA
rJMSF039N22+ GTTGCTTTTTATTTTTTTTGTCTTCTTTTTTTTATTTCTTATTCTGAAANCCCTGTGGCT
____________________________________________________________
consensus GTTGCTTTTTATTTTTTTTGTCTTCTTTTTTTTATTTCTTATTCTGAAANCCCTGTGGCT