Contig 011385:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF034H01Sequence576011385 (5)ref|XP_011086506.1|2e-74PREDICTED: protein LSM12 homolog A [Sesamum indicum]719011385 (5)ref|XP_009798322.1|2e-66PREDICTED: protein LSM12 homolog [Nicotiana sylvestris]
JMSF039A11Sequence587011385 (5)ref|XP_009798322.1|6e-82PREDICTED: protein LSM12 homolog [Nicotiana sylvestris]792011385 (5)ref|XP_011086506.1|2e-89PREDICTED: protein LSM12 homolog A [Sesamum indicum]
JMSF041A11Sequence491007465 (32)gb|EQY01644.1|1e-35inner membrane protein [Escherichia coli UMEA 3201-1]589011385 (5)ref|XP_006340109.1|7e-49PREDICTED: protein LSM12 homolog [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF039A11- GAAAGACCTCTCATAAGCAAGAGAAAAGAGAGA
JMSF034H01- TAAGCAAGAGAAAAGAGAGA
                      ____________________________________________________________
consensus GAAAGACCTCTCATAAGCAAGAGAAAAGAGAGA
 
. : . : . : . : . : . :
JMSF039A11- GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGAGTGGCGTCCATGGAAGCTCACAGCAN
JMSF034H01- GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGAGTGGCGTCCNTGGANNCTCACAGCAN
                      ____________________________________________________________
consensus GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGAGTGGCGTCCATGGAAGCTCACAGCAN
 
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JMSF039A11- TGAANATTTCGCGGTCGGGTGTATACTCTCCNTCAAAACCACTTTTGGTGAANAATTTGA
JMSF034H01- TGAANATTTCGCGGNCGGGTGTATACTCTCCNTCAAAACCACTTTTGGTGAANAATTTGA
rJMSF039A11+ TGAAGAATTTGA
                      ____________________________________________________________
consensus TGAANATTTCGCGGTCGGGTGTATACTCTCCNTCAAAACCACTTTTGGTGAAGAATTTGA
 
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JMSF039A11- AGGCCAAGTGATCACCTTTGACCGCCCCTCCNACATCCTTGTTCTTCAAGAANGAGGGAA
JMSF034H01- AGGCCAAGTGATCACCTTTGACCNCCCCTCCNACATCCTTGTTCTTCAAGAANGAGGGAA
rJMSF034H01+ GGAA
rJMSF039A11+ AGGCCAAGTGATCACCTTTGACCGCCCCTCCAACATCCTTGTTCTTCAAGAAGGAGGGAA
                      ____________________________________________________________
consensus AGGCCAAGTGATCACCTTTGACCGCCCCTCCAACATCCTTGTTCTTCAAGAAGGAGGGAA
 
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JMSF039A11- TTCNGGGTCNGGACCCAAGAGGAATTTACGGCTATTGAAAGCTANCTATATCANGGATTT
JMSF034H01- TTCNGGGTCAGGACCCAAGAGGAATTTACGGCTATTGAAAGCTANCTATATCANGGATTT
rJMSF034H01+ TTCAGGGTCAGGACCCAAGAGGAATTTACGGCTA-TGAAAGCTAACTATATCAAGGATTT
rJMSF039A11+ TTCAGGGTCAGGACCCAAGAGGAATTTACGGCTATTGAAAGCTAACTATATCAAGGATTT
                      ____________________________________________________________
consensus TTCAGGGTCAGGACCCAAGAGGAATTTACGGCTATTGAAAGCTAACTATATCAAGGATTT
 
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JMSF039A11- TGCTCTCCTGGGTCNTGGANAANACCCACTTGATGCCNACAAGTGTTTTCTCGATCTGGA
JMSF034H01- TGCTCTCCTGGGTCNTGGANAACACCCACTTGATGCCNACAAGTGTTTTCTCNATCTGGA
rJMSF034H01+ TGCTCTCCTGGGTCATGGAGAAGACCCACTTGATGCCAACAAGTGTTTTCTCGATCTGGA
rJMSF039A11+ TGCTCTCCTGGGTCATGGAGAAGACCCACTTGATGCCAACAAGTGTTTTCTCGATCTGGA
                      ____________________________________________________________
consensus TGCTCTCCTGGGTCATGGAGAAGACCCACTTGATGCCAACAAGTGTTTTCTCGATCTGGA
 
. : . : . : . : . : . :
JMSF039A11- TACTCTAANGGCTAGGGAGGATTCTGCANTCANACAAGCCGAGTTGGATGCAGAGAGATT
JMSF034H01- TACTCTAANGGCTAGGGAGGATTCTGCANTCACACAANCCGAGTTGGATGCAGAGAGATT
rJMSF041A11+ TACTCTAAAGGCTAGGGAGGATTCTGCAATCAGACAAGCCGAGTTGGATGCAGAGAGATT
rJMSF034H01+ TACTCTAAAGGCTAGGGAGGATTCTGCAATCAGACAAGCCGAGTTGGATGCAGAGAGATT
rJMSF039A11+ TACTCTAAAGGCTAGGGAGGATTCTGCAATCAGACAAGCCGAGTTGGATGCAGAGAGATT
                      ____________________________________________________________
consensus TACTCTAAAGGCTAGGGAGGATTCTGCAATCAGACAAGCCGAGTTGGATGCAGAGAGATT
 
. : . : . : . : . : . :
JMSF039A11- TGGGGTTGGTGTCACATCTGAGGCTCAGAGTATATTTGATGCTTTGGCTAANACGCATCC
JMSF034H01- TGGGGTTGGTGTCACNTCTGANGCTCAGANTATATTTGATGCTTTGGCTAANACGCATCC
rJMSF041A11+ TGGGGTTGGTGTCACATCTGAGGCTCAGAGTATATTTGATGCTTTGGCTAAAACGCATCC
rJMSF034H01+ TGGGGTTGGTGTCACATCTGAGGCTCAGAGTATATTTGATGCTTTGGCTAAAACGCATCC
rJMSF039A11+ TGGGGTTGGTGTCACATCTGAGGCTCAGAGTATATTTGATGCTTTGGCTAAAACGCATCC
                      ____________________________________________________________
consensus TGGGGTTGGTGTCACATCTGAGGCTCAGAGTATATTTGATGCTTTGGCTAAAACGCATCC
 
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JMSF039A11- TGTGCGCTGGGACAAGACAGTCATCNTTGTGATGAATGAGGTGCGTGTTAACAGCCCCTA
JMSF034H01- NGTGCGCTGGGACAAGACANTCNTCNTTGTGATGAATGAGGTGCGTGTTANCANCCCCTA
rJMSF041A11+ AGTGCGCTGGGACAAGACAGTCATCGTTGTGATGAATGAGGTGCGTGTTAGCAGCCCCTA
rJMSF034H01+ AGTGCGCTGGGACAAGACAGTCATCGTTGTGATGAATGAGGTGCGTGTTAGCAGCCCCTA
rJMSF039A11+ AGTGCGCTGGGACAAGACAGTCATCGTTGTGATGAATGAGGTGCGTGTTAGCAGCCCCTA
                      ____________________________________________________________
consensus AGTGCGCTGGGACAAGACAGTCATCGTTGTGATGAATGAGGTGCGTGTTAGCAGCCCCTA
 
. : . : . : . : . : . :
JMSF039A11- CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCANATGAAAGGGTGCGGAAAGTGCT
JMSF034H01- CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCAAATGANAGGGTGCGGANAGTGCT
rJMSF041A11+ CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCAAATGAAAGGGTGCGGAAAGTGCT
rJMSF034H01+ CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCAAATGAAAGGGTGCGGAAAGTGCT
rJMSF039A11+ CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCAAATGAAAGGGTGCGGAAAGTGCT
                      ____________________________________________________________
consensus CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCAAATGAAAGGGTGCGGAAAGTGCT
 
. : . : . : . : . : . :
JMSF039A11- TGANCTCGAGAGGA
JMSF034H01- TGAACTCGAGAGGA
rJMSF041A11+ TGAACTCGAGAGGAAGAAACTGCAAGCTCGTAACGCTTGACAGTGGCGTGCCTTTGATCC
rJMSF034H01+ TGAACTCGAGAGGAAGAAACTGCAAGCTCGTAACGCTTGACAGTGGCGTGCCTTTGATCC
rJMSF039A11+ TGAACTCGAGAGGAAGAAACTGCAAGCTCGTAACGCTTGACAGTGGCGTGCCTTTGATCC
                      ____________________________________________________________
consensus TGAACTCGAGAGGAAGAAACTGCAAGCTCGTAACGCTTGACAGTGGCGTGCCTTTGATCC
 
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rJMSF041A11+ CGTACTCCCTTCATGGGAATGCATCTGAGGTCTTCCGGGGAAACGCTCCACTTACCTCAG
rJMSF034H01+ CGTACTCCCTTCATGGGAATGCATCTGAGGTCTTCCGGGGAAACGCTCCACTTACCTCAG
rJMSF039A11+ CGTACTCCCTTCATGGGAATGCATCTGAGGTCTTCCGGGGAAACGCTCCACTTACCTCAG
                      ____________________________________________________________
consensus CGTACTCCCTTCATGGGAATGCATCTGAGGTCTTCCGGGGAAACGCTCCACTTACCTCAG
 
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rJMSF041A11+ TGAAGAATTCTAGCGTTCATATTTGTAAGAGATTCCGGGTTTTATAATGCTATAACTAAA
rJMSF034H01+ TGAAGAATTCTAGCGTTCATATTTGTAAGAGATTCCGGGTTTTATAATGCTATAACTAAA
rJMSF039A11+ TGAAGAATTCTAGCGTTCATATTTGTAAGAGATTCCGGGTTTTATAATGCTATAACTAAA
                      ____________________________________________________________
consensus TGAAGAATTCTAGCGTTCATATTTGTAAGAGATTCCGGGTTTTATAATGCTATAACTAAA
 
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rJMSF041A11+ ACCCTCGTACTCCCGAGTCCCGAGTTCCACCCCCTGCCGCCATGCACCTTATACTGACCC
rJMSF034H01+ ACCCTCGTACTCCCGAGTCCCGAGTTCCACCCCCTGCCGCCATGCACCTTATACTGACCC
rJMSF039A11+ ACCCTCGTACTCCCGAGTCCCGAGTTCCACCCCCTGCCGCCATGCACCTTATACTGACCC
                      ____________________________________________________________
consensus ACCCTCGTACTCCCGAGTCCCGAGTTCCACCCCCTGCCGCCATGCACCTTATACTGACCC
 
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rJMSF041A11+ GTTTTTCATTTCATCTTTTGCTGTACCGTTGCTTTCTGGATGTGCCAAGAGACCTGTGTG
rJMSF034H01+ GTTTTTCATTTCATCTTTTGCTGTACCGTTGCTTTCTGGATGTGCCAAGAGACCTGTGTG
rJMSF039A11+ GTTTTTCATTTCATCTTTTGCTGTACCGTTGCTTTCTGGATGTGCCAAGAGACCTGTGTG
                      ____________________________________________________________
consensus GTTTTTCATTTCATCTTTTGCTGTACCGTTGCTTTCTGGATGTGCCAAGAGACCTGTGTG
 
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rJMSF041A11+ TTCTGAAACGGCTAA-CAGGTCATTCAGTTCTCTCTGTC
rJMSF034H01+ TTCTGAAACGGCTAACCAGGTCATTCAGTTCTCTCTGTC
rJMSF039A11+ TTCTGAAACGGCTAAACAGGTCATTCAGTTCTCTCTGTCCAATCCCTCGACTTACCATTA
                      ____________________________________________________________
consensus TTCTGAAACGGCTAACCAGGTCATTCAGTTCTCTCTGTCCAATCCCTCGACTTACCATTA