Contig 011383:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004E02Sequence385003251 (120)gb|AAV33983.1|7e-58alpha tubulin, partial [Pinus taeda] gb|AAV33984.1| alpha tubulin, partial [Pinu336011383 (5)dbj|BAF37798.1|5e-20hypothetical protein [Ipomoea trifida]
JMSF006F07Sequence352009197 (4)gb|AAS79608.1|8e-50putative histone deacetylase [Ipomoea trifida]438011383 (5)dbj|BAF37798.1|2e-53hypothetical protein [Ipomoea trifida]
JMSF019C22Sequence237009197 (4)gb|AAS79608.1|9e-22putative histone deacetylase [Ipomoea trifida]702011383 (5)dbj|BAF37798.1|9e-97hypothetical protein [Ipomoea trifida]
JMSF038K08Sequence664009197 (4)gb|AAS79608.1|2e-140putative histone deacetylase [Ipomoea trifida]804011383 (5)emb|CDP06960.1|2e-111unnamed protein product [Coffea canephora]
JMSF044I15Sequence794009197 (4)gb|AAS79608.1|2e-131putative histone deacetylase [Ipomoea trifida]754011383 (5)emb|CDP06960.1|1e-111unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038K08+ TCTTCCGAACAGTAAGATTGTTTCTAGAAACACAAATATCT
                      ____________________________________________________________
consensus TCTTCCGAACAGTAAGATTGTTTCTAGAAACACAAATATCT
 
. : . : . : . : . : . :
rJMSF044I15+ GTTTTTGATTGTAGTTGTTTCATTGTAAGATCTTGGCNTTNGGGCATGGTAT
rJMSF038K08+ TCAATTTTGTTTTTGATTGTAGTTGTTTCATTGTAAGATCTTGGCTTT-GGGCATGGTAT
                      ____________________________________________________________
consensus TCAATTTTGTTTTTGATTGTAGTTGTTTCATTGTAAGATCTTGGCTTTNGGGCATGGTAT
 
. : . : . : . : . : . :
rJMSF044I15+ TTGTAGATTATTTCAAAGGTGGTTGAAACATATATACCAGGAGCAATAGTTCTCCAATGT
rJMSF019C22+ ATTATTTCAAAGGTGGTTGAAACATATATACCAGGAGCAATAGTTCTCCAATGT
rJMSF038K08+ TTGTAGATTATTTCAAAGGTGGTTGAAACATATATACCAGGAGCAATAGTTCTCCAATGT
                      ____________________________________________________________
consensus TTGTAGATTATTTCAAAGGTGGTTGAAACATATATACCAGGAGCAATAGTTCTCCAATGT
 
. : . : . : . : . : . :
rJMSF044I15+ GGGGCAGATTCACTAGCTGGTGATCGTTTGGGCTGCTTTAACCTCTCCATTGATG-----
rJMSF019C22+ GGGGCAGATTCACTAGCTGGTGATCGTTTGGGCTGCTTTAACCTCTCCATTGATGGTGCT
rJMSF038K08+ GGGGCAGATTCACTAGCTGGTGATCGTTTGGGCTGCTTTAACCTCTCCATTGATG-----
                      ____________________________________________________________
consensus GGGGCAGATTCACTAGCTGGTGATCGTTTGGGCTGCTTTAACCTCTCCATTGATG-----
 
. : . : . : . : . : . :
rJMSF044I15+ ---------GGCATGCTGAATGTGTTCGGTTTGTGAAGAAATTTAATATTCCCCTGCTGG
rJMSF019C22+ AGTCTACTTGGCATGCTGAATGTGTTCGGTTTGTGAAGAAATTTAATATTCCCCTGCTGG
rJMSF038K08+ ---------GGCATGCTGAATGTGTTCGGTTTGTGAAGAAATTTAATATTCCCCTGCTGG
                      ____________________________________________________________
consensus ---------GGCATGCTGAATGTGTTCGGTTTGTGAAGAAATTTAATATTCCCCTGCTGG
 
. : . : . : . : . : . :
rJMSF044I15+ TAACTGGAGGAGGGGGGTATACAAAAGAAAATGTTGCTAGATGTTGGGCTTATGAAACTG
rJMSF019C22+ TAACTGGAGGAGGGGGGTATACAAAAGAAAATGTTGCTAGATGTTGGGCTTATGAAACTG
rJMSF038K08+ TAACTGGAGGAGGGGGGTATACAAAAGAAAATGTTGCTAGATGTTGGGCTTATGAAACTG
                      ____________________________________________________________
consensus TAACTGGAGGAGGGGGGTATACAAAAGAAAATGTTGCTAGATGTTGGGCTTATGAAACTG
 
. : . : . : . : . : . :
rJMSF044I15+ GGGTTCTTCTAGACTCAGAGCTTCCTAATGAGATACCTGATAATGACTACATCAAATATT
rJMSF019C22+ GGGTTCTTCTAGACTCAGAGCTTCCTAATGAGATACCTGATAATGACTACATCAAATATT
rJMSF006F07+ ATGAGATACCTGATAATGACTACATCAAATATT
rJMSF038K08+ GGGTTCTTCTAGACTCAGAGCTTCCTAATGAGATACCTGATAATGACTACATCAAATATT
                      ____________________________________________________________
consensus GGGTTCTTCTAGACTCAGAGCTTCCTAATGAGATACCTGATAATGACTACATCAAATATT
 
. : . : . : . : . : . :
rJMSF044I15+ TTGGCCCCGATTATTCACTGAAGATTCCTGGTGGGCACATTGAGAACTTGAATAGCAAGT
rJMSF004E02+ TAGCAANT
rJMSF019C22+ TTGGCCCCGATTATTCACTGAAGATTCCTGGTGGGCACATTGAGAACTTGAATAGCAAGT
rJMSF006F07+ TTGGCCCCGATTATTCACTGAAGATTCCTGGTGGGCACATTGAGAACTTGAATAGCAAGT
rJMSF038K08+ TTGGCCCCGATTATTCACTGAAGATTCCTGGTGGGCACATTGAGAACTTGAATAGCAAGT
                      ____________________________________________________________
consensus TTGGCCCCGATTATTCACTGAAGATTCCTGGTGGGCACATTGAGAACTTGAATAGCAAGT
 
. : . : . : . : . : . :
rJMSF044I15+ CATACCTTGGCACCATAAAATCACATGTATTAGAAAATCTTCGATACATCCAGCATGCT-
rJMSF004E02+ CATACCTTGNCACCATNAAATCACATGTATTAGAAAATCTNNGATACATCCAGCATGCTC
rJMSF019C22+ CATACCTTGGCACCATAAAATCACATGTATTAGAAAATCTTCGATACATCCAGCATGCT-
rJMSF006F07+ CATACCTTGGCACCATAAAATCACATGTATTAGAAAATCTTCGATACATCCAGCATGCT-
rJMSF038K08+ CATACCTTGGCACCATAAAATCACATGTATTAGAAAATCTTCGATACATCCAGCATGCT-
                      ____________________________________________________________
consensus CATACCTTGGCACCATAAAATCACATGTATTAGAAAATCTTCGATACATCCAGCATGCT-
 
. : . : . : . : . : . :
rJMSF044I15+ CCTAGTGTGCAGATGCAAGAGGTGCCTCCTGACTTCTATATTCCCGATTTTGATGAAGAT
rJMSF004E02+ CCTAGTGTGCAGATGCAAGAGGTGCCTCCTGANTTCTATATTCCCGATTTTGATGAAGAT
rJMSF019C22+ CCTAGTGTGCAGATGCAAGAGGTGCCTCCTGACTTCTATATTCCCGATTTTGATGAAGAT
rJMSF006F07+ CNTAGTGTGCAGATGCAAGAGGTGCCTCCTGACTTCTATATTCCCGATTTTGATGAAGAT
rJMSF038K08+ CCTAGTGTGCAGATGCAAGAGGTGCCTCCTGACTTCTATATTCCCGATTTTGATGAAGAT
                      ____________________________________________________________
consensus CCTAGTGTGCAGATGCAAGAGGTGCCTCCTGACTTCTATATTCCCGATTTTGATGAAGAT
 
. : . : . : . : . : . :
rJMSF044I15+ ACGCAAAATCCTGATGAGCGTTTGGATCAGCATACACAAGACAAACAAATCCAGCGAGAT
rJMSF004E02+ ACGCAAAATCNTGATGAGCGTTTGGATCAGCATACACAAGACAAACAAATCCAGCGAGAT
rJMSF019C22+ ACGCAAAATCCTGATGAGCGTTTGGATCAGCATACACAAGACAAACAAATCCAGCGAGAT
rJMSF006F07+ ACGCAAAATCCTGATGAGCGTTTGGATCAGCATACACAAGACAANCAAATCCAGCGAGAT
rJMSF038K08+ ACGCAAAATCCTGATGAGCGTTTGGATCAGCATACACAAGACAAACAAATCCAGCGAGAT
                      ____________________________________________________________
consensus ACGCAAAATCCTGATGAGCGTTTGGATCAGCATACACAAGACAAACAAATCCAGCGAGAT
 
. : . : . : . : . : . :
rJMSF044I15+ GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
rJMSF004E02+ GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
rJMSF019C22+ GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
rJMSF006F07+ GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
rJMSF038K08+ GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
                      ____________________________________________________________
consensus GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
 
. : . : . : . : . : . :
rJMSF044I15+ ATTACCTACCTCCTTGGAGGGATTACTAGGTTCAGACTTGATTAGGTAAATGTAAATCTA
rJMSF004E02+ ATTACCTACCTCCTTGGAGGGATTNCTAGGTTCAGACTTGATTAGGTAAA
rJMSF019C22+ ATTACCTACCTCCTTGGAGGGATTACTAGGTTCAGACTTGATTAGGTAAATGTAAATCTA
rJMSF006F07+ ATTACCTACCTCCTTGGAGGGATTACTAGGTTCAGACTTGATTAGGTAAATGTAAATCTA
rJMSF038K08+ ATTACCTACCTCCTTGGAGGGATTACTAGGTTCAGACTTGATTAGGTAAATGTAAATCTA
                      ____________________________________________________________
consensus ATTACCTACCTCCTTGGAGGGATTACTAGGTTCAGACTTGATTAGGTAAATGTAAATCTA
 
. : . : . : . : . : . :
rJMSF044I15+ TAT-TGTTTTGCCTCAGAAAGAGGGAATTATAACCATTCTAATGTTGTTTTTGTGTCC
rJMSF019C22+ TAT-TGTTTTGCCTCAGAAAGAGGGAATTATAACCATTCT
rJMSF006F07+ TATCTGTTTTGCCTCAGAAAGAGGGAATTATAACCATTCT
rJMSF038K08+ TAT-TGTTTTGCCTCAGAAAGAGGGAATTATAACCATTCTAATGTTGTTTTTGTGTCCTT
                      ____________________________________________________________
consensus TAT-TGTTTTGCCTCAGAAAGAGGGAATTATAACCATTCTAATGTTGTTTTTGTGTCCTT