Contig 011380:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028J14Sequence666020014ref|XP_009797552.1|9e-10PREDICTED: TBCC domain-containing protein 1-like [Nicotiana sylvestris]723011380 (3)
JMSF036N10Sequence650010822 (6)ref|XP_009797552.1|9e-10PREDICTED: TBCC domain-containing protein 1-like [Nicotiana sylvestris]708011380 (3)
JMSF037N10Sequence644010822 (6)ref|XP_009797552.1|9e-10PREDICTED: TBCC domain-containing protein 1-like [Nicotiana sylvestris]634011380 (3)

Alignment

This contig is upended


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rJMSF028J14+                                         TTTCATGGACAGATCTAGTACGGTGACTC
                      ____________________________________________________________
consensus                                            TTTCATGGACAGATCTAGTACGGTGACTC
 
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rJMSF028J14+          ATCAAATTCATCGATTGCTTGAAAGGTGTCTGAAATCTGGGGTTTTGATAGGTTTACTCT
                      ____________________________________________________________
consensus             ATCAAATTCATCGATTGCTTGAAAGGTGTCTGAAATCTGGGGTTTTGATAGGTTTACTCT
 
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rJMSF028J14+          CAGAACTAAGTTAGACAATACTGGTAATTTTGTTCGAAATAACATTCTCTGTTATTTGCT
rJMSF036N10+                    TTAGACAATACTGGTAATTTTGTCCAAAATAACATTCTCTGTTATTTGCT
                      ____________________________________________________________
consensus             CAGAACTAAGTTAGACAATACTGGTAATTTTGTTCGAAATAACATTCTCTGTTATTTGCT
 
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rJMSF028J14+          TATTCTATTTCATCCTAACATATAAATTTTTTCGTTTGGTATTTGTAAGCTATTAGCTGT
rJMSF036N10+          TATTCTATTTCAACCTAACATATAAATTTTTTCGTTTGGTATTTGTAAGCTATTAGCTGT
rJMSF037N10+                                                      GTAAGCTATGAGCTGT
                      ____________________________________________________________
consensus             TATTCTATTTCATCCTAACATATAAATTTTTTCGTTTGGTATTTGTAAGCTATTAGCTGT
 
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rJMSF028J14+          TTCGTGATGCCTATGACTTGGTAAGCCTGTTATAGTACACATTTTTACACTGTTATATAA
rJMSF036N10+          TTCGTGATGCCTATCACTTGGTAAGTCTGTTATAGTACACATTTTTACACTGTTATATAA
rJMSF037N10+          TTCGTGATGCCTATCNCTTGGTAAGTCTGNTATAGTACACATTTTTACACTGTTATATAA
                      ____________________________________________________________
consensus             TTCGTGATGCCTATCACTTGGTAAGTCTGTTATAGTACACATTTTTACACTGTTATATAA
 
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rJMSF028J14+          ATTACCAGTCATCAAGAACACTAAGTTTATAGAAGAGGCTTTAGATGCTTATAAAATTTA
rJMSF036N10+          ATTACCAGTCATCTAGAACACTAAGTTTATAGAAGAGGCTTTAGATGCTTATAAAATTTA
rJMSF037N10+          ATTGCCAGTCATCTAGANCACTAAGTTTATAGAAGAGGCNTTAGATGCTTATAAAAGTTA
                      ____________________________________________________________
consensus             ATTACCAGTCATCTAGAACACTAAGTTTATAGAAGAGGCTTTAGATGCTTATAAAATTTA
 
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rJMSF028J14+          ATTTCCCACCAAATCCAGTTTTAACAGTAACAGTAATAGAACTCAATGAATGCCTTTTCA
rJMSF036N10+          ATTTCCCACCAAATCCAGTTTTAACAGTAACAGTAATAGAACTCAATGAATGCCTTTTCA
rJMSF037N10+          ANTTCCCACCAAATCCAGTTTTAACAGTAACAGTAATAGAACTCAATGAATGCCTTTTCA
                      ____________________________________________________________
consensus             ATTTCCCACCAAATCCAGTTTTAACAGTAACAGTAATAGAACTCAATGAATGCCTTTTCA
 
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rJMSF028J14+          TGTGATATCATATGATAAGATTTACATTGCTTTCAAAAATACTTCTACAATTTTTAATTT
rJMSF036N10+          TGTGATATCATATGATAAGATTTACATTGCTTTC-AAAATACTTCTACAATTTTTAA-TT
rJMSF037N10+          TGTGATATCATATGATAAGATTNACATTGCTTTC-ANAATACTTCTACAANTTTTAA-TT
                      ____________________________________________________________
consensus             TGTGATATCATATGATAAGATTTACATTGCTTTC-AAAATACTTCTACAATTTTTAA-TT
 
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rJMSF028J14+          TTTTCGCATATATGTTTGTCATTAACACATTGGTTGAGTTATTTGCACATGATGATAATG
rJMSF036N10+          TTTTCGCATATATGTTTGTCATTAACACATTGGTTGAGTTATTTGCACATGATGATAATG
rJMSF037N10+          TTTTCGCATATATGTTTGTCATTAACACATTGGCTGAGNTATTTGCACANGATGATAATG
                      ____________________________________________________________
consensus             TTTTCGCATATATGTTTGTCATTAACACATTGGTTGAGTTATTTGCACATGATGATAATG
 
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rJMSF028J14+          AAATATGATGTTTACTGCAGTGAAGAAAGTTCTAATACCTGGATTTGGTGTAGGTTGTGG
rJMSF036N10+          AAATATGATGTTTACTGCAGTGAAGAAAGTTCTAATACCTGGATTTGGTGTAGGTTGTGG
rJMSF037N10+          AAATATGATGTTTACTGCAGTGAAGANAGTTCTAATACCTGGATTTGGTGTAGGTTGTGG
                      ____________________________________________________________
consensus             AAATATGATGTTTACTGCAGTGAAGAAAGTTCTAATACCTGGATTTGGTGTAGGTTGTGG
 
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rJMSF028J14+          CTTCCTCTTTCTTCCTATGATTGCGGAAGTTGTTAGCTTCTTCATGCTGCCAGACTTGTG
rJMSF036N10+          CTTCCTCTTTCTTCCTATGATTGCGGAAGTTGTTAGCTTCTTCATGCTGTCAGACTTGTG
rJMSF037N10+          CTTCCTCTTTCTTCCTATGNTTGCGGAAGTTGTTAGCTTCTTCCNGCTGTCAGACTTGTG
                      ____________________________________________________________
consensus             CTTCCTCTTTCTTCCTATGATTGCGGAAGTTGTTAGCTTCTTCATGCTGTCAGACTTGTG
 
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rJMSF028J14+          TTCTGGGAAGATATTAGAGAGGATTTTATAAGACTCTGTAAAACGTTTCATGGATTCTTT
rJMSF036N10+          TTCTGGGAAGATATTAGAGAGGATTTTATAAGACTCTGTAAAACGTTTCATGGATTCTTT
rJMSF037N10+          TTCTGGGAAGATATTAGAGAGGATTTTATAAGACTCTGTAAAACGTTTCNTGGATTCTTC
                      ____________________________________________________________
consensus             TTCTGGGAAGATATTAGAGAGGATTTTATAAGACTCTGTAAAACGTTTCATGGATTCTTT
 
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rJMSF028J14+          AGCTATTTAATGTGTGGCGTGAGGGCGTGACAT                           
rJMSF036N10+          GGCTATTTAATGTGTGGCGTGAGGGCGTGACATTGGAATACTAACAGTTTTCTTGGAATG
rJMSF037N10+          GCCTATCNAACGTGTGGCGTGAGGGCGTGACATTGGAATACTAACAGTTTTCTTGGAATG
                      ____________________________________________________________
consensus             GGCTATTTAATGTGTGGCGTGAGGGCGTGACATTGGAATACTAACAGTTTTCTTGGAATG
 
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rJMSF036N10+          AATTTATGTAATTAATGCTCATCGGAAAACCATGTATGATTTAGGATACCAAAGTCGGCT
rJMSF037N10+          AATTTACGTAACTAATGCTCATCGGAAAAACATGTATGACTTAGGATACCAAAGTCGGCT
                      ____________________________________________________________
consensus             AATTTATGTAATTAATGCTCATCGGAAAACCATGTATGATTTAGGATACCAAAGTCGGCT