Contig 011379:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS079A11Sequence627011379 (2)ref|XP_010108834.1|7e-112Protein kinase PVPK-1 [Morus notabilis] gb|EXC20349.1| Protein kinase PVPK-1 [Mo
JMSF037E24Sequence635009463 (2)ref|XP_009615256.1|7e-17PREDICTED: protein kinase PVPK-1-like [Nicotiana tomentosiformis] ref|XP_0096152696011379 (2)ref|XP_009603203.1|1e-98PREDICTED: serine/threonine-protein kinase D6PKL1-like [Nicotiana tomentosiform

Alignment

This contig is upended


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JMFS079A11-                TCGAATTCAAATATAGAATCAAAGAAATCGGGATACTGTATCGAGCCATCTTGTG
                      ____________________________________________________________
consensus                  TCGAATTCAAATATAGAATCAAAGAAATCGGGATACTGTATCGAGCCATCTTGTG
 
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JMFS079A11-           TAATCCAGCCATCATGTATCCAACCGGCATGCTTCACACCACGCTTCCTTAGCAGGGCCA
                      ____________________________________________________________
consensus             TAATCCAGCCATCATGTATCCAACCGGCATGCTTCACACCACGCTTCCTTAGCAGGGCCA
 
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JMFS079A11-           AGAAAGATTCAAAGAAGAAGACGAAGCCAAAGACCGAGATACATAGTCAAGTAACCCCTC
rJMSF037E24+                                  AGCCAAAGACCGAGATACATAGTCAAGTAACCCCTC
                      ____________________________________________________________
consensus             AGAAAGATTCAAAGAAGAAGACGAAGCCAAAGACCGAGATACATAGTCAAGTAACCCCTC
 
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JMFS079A11-           TTCCCGAGCTGATTGCAGAACCAACGAATGCTCGTTCAATGTCTTTTGTGGGTACACACG
rJMSF037E24+          TTCCCGAGCTGATTGCAGAACCAACGAATGCTCGTTCAATGTCTTTTGTGGGTACACACG
                      ____________________________________________________________
consensus             TTCCCGAGCTGATTGCAGAACCAACGAATGCTCGTTCAATGTCTTTTGTGGGTACACACG
 
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JMFS079A11-           AGTACTTGGCCCCCGAGATCATAAAAGGCGAAGGACATGGCAGTGCTGTTGACTGGTGGA
rJMSF037E24+          AGTACTTGGCCCCCGAGATCATAAAAGGCGAAGGACATGGCAGTGCTGTTGACTGGTGGA
                      ____________________________________________________________
consensus             AGTACTTGGCCCCCGAGATCATAAAAGGCGAAGGACATGGCAGTGCTGTTGACTGGTGGA
 
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JMFS079A11-           CATTTGGGATCTTTCTGTACGAACTTTTGTTTGGGAAAACTCCTTTCAAAGGACAGGGAA
rJMSF037E24+          CATTTGGGATCTTTCTGTACGAACTTTTGTTTGGGAAAACTCCTTTCAAAGGACAGGGAA
                      ____________________________________________________________
consensus             CATTTGGGATCTTTCTGTACGAACTTTTGTTTGGGAAAACTCCTTTCAAAGGACAGGGAA
 
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JMFS079A11-           ACCGGGCAACATTGTTCAATGTTGTTGGGCAGCCGTTAAGATTCCCAGACTCTCCGACTG
rJMSF037E24+          ACCGGGCAACATTGTTCAATGTTGTTGGGCAGCCGTTAAGATTCCCAGACTCTCCGACTG
                      ____________________________________________________________
consensus             ACCGGGCAACATTGTTCAATGTTGTTGGGCAGCCGTTAAGATTCCCAGACTCTCCGACTG
 
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JMFS079A11-           TGAGCTTTGCTGCTCGGGACTTGATCAGAGGTTTACTAGTGAAGGAGCCACAGCACCGTC
rJMSF037E24+          TGAGCTTTGCTGCTCGGGACTTGATCAGAGGTTTACTAGTGAAGGAGCCACAGCACCGTC
                      ____________________________________________________________
consensus             TGAGCTTTGCTGCTCGGGACTTGATCAGAGGTTTACTAGTGAAGGAGCCACAGCACCGTC
 
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JMFS079A11-           TTGCCTATAGGCGCGGGGCAACAGAGATAAAACAGCATCCGTTTTTCCAGAGCGTGAATT
rJMSF037E24+          TTGCCTATAGGCGCGGGGCAACAGAGATAAAACAGCATCCGTTTTTCCAGAGCGTGAATT
                      ____________________________________________________________
consensus             TTGCCTATAGGCGCGGGGCAACAGAGATAAAACAGCATCCGTTTTTCCAGAGCGTGAATT
 
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JMFS079A11-           GGGCGCTGATAAGGTGTGCCAGCCCCCCGGATGTGCCAAAACCATTCATATTCCAACAGC
rJMSF037E24+          GGGCGCTGATAAGGTGTGCCAGCCCCCCGGATGTGCCAAAACCATTCATATTCCAACAGC
                      ____________________________________________________________
consensus             GGGCGCTGATAAGGTGTGCCAGCCCCCCGGATGTGCCAAAACCATTCATATTCCAACAGC
 
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JMFS079A11-           AACAGGCGGCGGCAGCAGCAGCAGCAGCGGCG                            
rJMSF037E24+          AACAGGCGGCGGCAGCAGCAGCAGCAGCGGCGCAGAAATCTCCGGCAGCCACAAAAGGGC
                      ____________________________________________________________
consensus             AACAGGCGGCGGCAGCAGCAGCAGCAGCGGCGCAGAAATCTCCGGCAGCCACAAAAGGGC
 
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rJMSF037E24+          AAAGTGGTGTTGATGTCAAGTCTTCGGATAATTATTTCGAGATTGATTTCTTCTGATGAT
                      ____________________________________________________________
consensus             AAAGTGGTGTTGATGTCAAGTCTTCGGATAATTATTTCGAGATTGATTTCTTCTGATGAT
 
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rJMSF037E24+          TCATTCTTGTTTCCTTCTTTTTCTAAGTCGCCGTCAATCACTGGACTGGACAGTAGTAGT
                      ____________________________________________________________
consensus             TCATTCTTGTTTCCTTCTTTTTCTAAGTCGCCGTCAATCACTGGACTGGACAGTAGTAGT
 
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rJMSF037E24+          AGTAGTAAGTAGTGTACTTTGAATTATATCATCTCCTTTTATGTGGAAGTAAGGAATGCC
                      ____________________________________________________________
consensus             AGTAGTAAGTAGTGTACTTTGAATTATATCATCTCCTTTTATGTGGAAGTAAGGAATGCC