| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF023A21 | Sequence | 761 | 011376 (3) | ref|XP_006348017.1| | 2e-59 | PREDICTED: ankyrin repeat-containing protein At2g01680-like [Solanum tuberosum] | |||||
| JMSF027C15 | Sequence | 669 | 011376 (3) | ref|XP_006348017.1| | 2e-65 | PREDICTED: ankyrin repeat-containing protein At2g01680-like [Solanum tuberosum] | 726 | 000875 (2) | ref|XP_009759429.1| | 3e-48 | PREDICTED: ankyrin repeat-containing protein At3g12360-like [Nicotiana sylvestr |
| JMSF036K23 | Sequence | 681 | 000875 (2) | emb|CDP09407.1| | 8e-33 | unnamed protein product [Coffea canephora] | 694 | 011376 (3) | ref|XP_006348017.1| | 4e-54 | PREDICTED: ankyrin repeat-containing protein At2g01680-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF027C15+ CAAGAGTGTGCTGGACATAANTCCTTAAACAATG
____________________________________________________________
consensus CAAGAGTGTGCTGGACATAANTCCTTAAACAATG
. : . : . : . : . : . :
JMSF027C15+ CAGGTCTCACCCCTCTGGATGTTTTGCTGATTTTTCAAAGCGAAGCAGGTGACAGAGAAA
rJMSF023A21+ CGAAGCAGGTGACAGAGNAA
____________________________________________________________
consensus CAGGTCTCACCCCTCTGGATGTTTTGCTGATTTTTCAAAGCGAAGCAGGTGACAGAGAAA
. : . : . : . : . : . :
JMSF027C15+ TCGAGGAAATGCTAAGAAGGGCAGGAGGTGCAAGGGCAAAAGACTTCTCCCTTCAATCTC
rJMSF023A21+ TCGAGGAAATGCTAAGAAGGGCAGGAGGTGCAAGGGCAAAAGACTTCTCCCTTCAATCTC
____________________________________________________________
consensus TCGAGGAAATGCTAAGAAGGGCAGGAGGTGCAAGGGCAAAAGACTTCTCCCTTCAATCTC
. : . : . : . : . : . :
JMSF027C15+ TAGAGGCTGATAGAACCGCTACCTCTGATGTTGACCAAGGAAGGCCGCGATCGCCTGCTA
rJMSF023A21+ TAGAGGCTGATAGAACCGCTACCTCTGATGTTGACCAAGGAAGGCCGCGATCGCCTGCTA
rJMSF036K23+ TGACCAAGGAAGGCCGCGATCGCCTGCTA
____________________________________________________________
consensus TAGAGGCTGATAGAACCGCTACCTCTGATGTTGACCAAGGAAGGCCGCGATCGCCTGCTA
. : . : . : . : . : . :
JMSF027C15+ AACAATTGCTGGACTATTTCAAATACGACGCCATCAAAGACTCCCCAGCTAAAGTAAGAA
rJMSF023A21+ AACAATTGCTGGACTATTTCAAATACGACGCCATCAAAGACTCCCCAGCTAAAGTAAGAA
rJMSF036K23+ AACAATTGCTGGACTATTTCAAATACGACGCCGTCAAAGACTCCCCAGCTAAAGTAAGAA
____________________________________________________________
consensus AACAATTGCTGGACTATTTCAAATACGACGCCATCAAAGACTCCCCAGCTAAAGTAAGAA
. : . : . : . : . : . :
JMSF027C15+ ACACCCTCCTCGTGATTACTGTTCTCATTGCAACAGCCACTTATCAGGCTGTGCTTAGTC
rJMSF023A21+ ACACCCTCCTCGTGATTACTGTTCTCATTGCAACAGCCACTTATCAGGCTGTGCTTAGTC
rJMSF036K23+ ACACCCTCCTCGTGATTACTGTTCTCATTGCAACAGCCACTTATCAGGCTGTGCTTAGTC
____________________________________________________________
consensus ACACCCTCCTCGTGATTACTGTTCTCATTGCAACAGCCACTTATCAGGCTGTGCTTAGTC
. : . : . : . : . : . :
JMSF027C15+ CTCCGGGTGGCGTTTGGCAGGACAACTCAAATGACCATGTTGCTGGGAAGTCAGTAATGG
rJMSF023A21+ CTCCGGGTGGCGTTTGGCAGGACAACTCAAATGACCATGTTGCTGGGAAGTCAGTAATGG
rJMSF036K23+ CTCCGGGTGGCGTTTGGCAGGACAACTCAAATGACCATGTTGCTGGGAAGTCAGTAATGG
____________________________________________________________
consensus CTCCGGGTGGCGTTTGGCAGGACAACTCAAATGACCATGTTGCTGGGAAGTCAGTAATGG
. : . : . : . : . : . :
JMSF027C15+ GTTCACTCAACCCAACAGCATACATCCTCTTCCTGGTTTCCAACTCTGTTGGATTCTATA
rJMSF023A21+ GTTCACTCAACCCAACAGCATACATCCTCTTCCTGGTTTCCAACTCTGTTGGATTCTATA
rJMSF036K23+ GTTCACTCAACCCAACAGCATACATCCTCTTCCTGGTTTCCAACTCTGTTGGATTCTATA
____________________________________________________________
consensus GTTCACTCAACCCAACAGCATACATCCTCTTCCTGGTTTCCAACTCTGTTGGATTCTATA
. : . : . : . : . : . :
JMSF027C15+ CATCCCTTCACATAATCGGCCTCCTCACAAATGCATTCCCTCTGCGGCTAGAACTTCAAA
rJMSF023A21+ CATCCCTTCACATAATCGGCCTCCTCACAAATGCATTCCCTCTGCGGCTAGAACTTCAAA
rJMSF036K23+ CATCCCTTCACATAATCGGCCTCCTCACAAATGCATTCCCTCTGCGGCTAGAACTTCAAA
____________________________________________________________
consensus CATCCCTTCACATAATCGGCCTCCTCACAAATGCATTCCCTCTGCGGCTAGAACTTCAAA
. : . : . : . : . : . :
JMSF027C15+ TTTCAATTTGTGCACTTATCATTACTTATGATACATGTATGACTGCTATCGCGCCCAGCA
rJMSF023A21+ TTTCAATTTGTGCACTTATCATTACTTATGATACATGTATGACTGCTATCGCGCCCAGCA
rJMSF036K23+ TTTCAATTTGTGCACTTATCATTACTTATGATACATGTATGACTGCTATCGCGCCCAGCA
____________________________________________________________
consensus TTTCAATTTGTGCACTTATCATTACTTATGATACATGTATGACTGCTATCGCGCCCAGCA
. : . : . : . : . : . :
JMSF027C15+ GCCGCATATCTACCATGTTCACTGTCATCTCTATTGTCCTTCCAATTCTGGCTCTAGTTT
rJMSF023A21+ GCCGCATATCTACCATGTTCACTGTCATCTCTATTGTCCTTCCAATTCTGGCTCTAGTTT
rJMSF036K23+ GCCGCATATCTACCATGTTCACTGTCATCTCTATTGTCCTTCCAATTCTGGCTCTAGTTT
____________________________________________________________
consensus GCCGCATATCTACCATGTTCACTGTCATCTCTATTGTCCTTCCAATTCTGGCTCTAGTTT
. : . : . : . : . : . :
JMSF027C15+ TGAGCGTCGGGTTGAGAAGCTACCTCAAGGCACC
rJMSF023A21+ TGAGCGTCGGGTTGAGAAGCTACCTCAAGGCACCAAGATGTGTATTGCCACTTACATCCA
rJMSF036K23+ TGAGCGTCGGGTTGAGAAGCTACCTCAAGGCACCAAGATGTGTATTGCCACTTACATCCA
____________________________________________________________
consensus TGAGCGTCGGGTTGAGAAGCTACCTCAAGGCACCAAGATGTGTATTGCCACTTACATCCA
. : . : . : . : . : . :
rJMSF023A21+ ACTCAAATTCTAGGTAGGATACTGATATCAAGGGCATGATTTGTAATTTCTGTGCATTTC
rJMSF036K23+ ACTCAAATTCTAGGTAGGATACTGATATCAAGGGCATGATTTGTAATTTCTGTGCATTTC
____________________________________________________________
consensus ACTCAAATTCTAGGTAGGATACTGATATCAAGGGCATGATTTGTAATTTCTGTGCATTTC
. : . : . : . : . : . :
rJMSF023A21+ CATGCTTTTCTTTCCAGATTTACTACTTGGTTTTACATGTATGACTGTTATTTTAGGTTG
rJMSF036K23+ CATGCTTTTCTTTCCAGATTTACTACTTGGTTTTACATGTATGACTGTTATTTTAGGTTG
____________________________________________________________
consensus CATGCTTTTCTTTCCAGATTTACTACTTGGTTTTACATGTATGACTGTTATTTTAGGTTG
. : . : . : . : . : . :
rJMSF023A21+ AAGCTATTGTACCTTCTTCTA
rJMSF036K23+ AAGCTATTGTACCTTCTTCTACTAGTCTACTAGACAATACACTATCTATATAGTCTCTTT
____________________________________________________________
consensus AAGCTATTGTACCTTCTTCTACTAGTCTACTAGACAATACACTATCTATATAGTCTCTTT