Contig 011373:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001E23Sequence360006305 (8)ref|XP_010323025.1|1e-12PREDICTED: uncharacterized protein LOC101246936 isoform X2 [Solanum lycopersicu791011373 (2)ref|XP_009596694.1|2e-110PREDICTED: uncharacterized AAA domain-containing protein C328.04-like [Nicotian
JMSF036C04Sequence649006305 (8)ref|XP_010323025.1|6e-48PREDICTED: uncharacterized protein LOC101246936 isoform X2 [Solanum lycopersicu742011373 (2)ref|XP_009596694.1|2e-92PREDICTED: uncharacterized AAA domain-containing protein C328.04-like [Nicotian

Alignment

This contig is upended


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rJMSF001E23+                                                    GGCGGGAAAATTCCCGGG
                      ____________________________________________________________
consensus                                                       GGCGGGAAAATTCCCGGG
 
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rJMSF001E23+          GAGCATGAAGCTATGCGCAAAATGAAGAATGAATTCATGGTAAATTGGGATGGTTTGCGT
rJMSF036C04+                                                                  GCGT
                      ____________________________________________________________
consensus             GAGCATGAAGCTATGCGCAAAATGAAGAATGAATTCATGGTAAATTGGGATGGTTTGCGT
 
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rJMSF001E23+          ACAAAGGATAACGAACGAGTGATTGTACTTGCTGCAACAAATAGACCTTTTGACCTTGAT
rJMSF036C04+          ACAAAGGATAACGAACGAGTGATTGTACTTGCTGCAACAAATAGACCTTTTGACCTTGAT
                      ____________________________________________________________
consensus             ACAAAGGATAACGAACGAGTGATTGTACTTGCTGCAACAAATAGACCTTTTGACCTTGAT
 
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rJMSF001E23+          GAGGCAGTTATTAGGAGGCTTCCTCGAAGGCTGATGGTTAACTTGCCAGAAGCTCCGAAT
rJMSF036C04+          GAGGCAGTTATTAGGAGGCTTCCTCGAAGGCTGATGGTTAACTTGCCAGAAGCTCCGAAT
                      ____________________________________________________________
consensus             GAGGCAGTTATTAGGAGGCTTCCTCGAAGGCTGATGGTTAACTTGCCAGAAGCTCCGAAT
 
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rJMSF001E23+          AGGGAAAAGATTTTAAGCGTGATATTGGGCAAGGAAGAATTAGCACCTAATGTTGATCTA
rJMSF036C04+          AGGGAAAAGATTTTAAGCGTGATATTGGGCAAGGAAGAATTAGCACCTAATGTTGATCTA
                      ____________________________________________________________
consensus             AGGGAAAAGATTTTAAGCGTGATATTGGGCAAGGAAGAATTAGCACCTAATGTTGATCTA
 
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rJMSF001E23+          GAAGCAATTGCTAACATGACTGAAGGATACTCGGGAAGCGATTTAAAGAATTTGTGTATT
rJMSF036C04+          GAAGCAATTGCTAACATGACTGAAGGATACTCGGGAAGCGATTTAAAGAATTTGTGTATT
                      ____________________________________________________________
consensus             GAAGCAATTGCTAACATGACTGAAGGATACTCGGGAAGCGATTTAAAGAATTTGTGTATT
 
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rJMSF001E23+          ACTGCAGCGCACCGCCCTATAAGGGAAATTCTGAAAAAAGAGCAAGCGGAGAAGGTGTTG
rJMSF036C04+          ACTGCAGCGCACCGCCCTATAAGGGAAATTCTGAAAAAAGAGCAAGCGGAGAAGGTGTTG
                      ____________________________________________________________
consensus             ACTGCAGCGCACCGCCCTATAAGGGAAATTCTGAAAAAAGAGCAAGCGGAGAAGGTGTTG
 
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rJMSF001E23+          GCAGTGGCAGAAAACAGACCACTGCCTACACTCCTTAGCAGTTCTGACATCCGCGCTCTC
rJMSF036C04+          GCAGTGGCAGAAAACAGACCACTGCCTACACTCCTTAGCAGTTCTGACATCCGCGCTCTC
                      ____________________________________________________________
consensus             GCAGTGGCAGAAAACAGACCACTGCCTACACTCCTTAGCAGTTCTGACATCCGCGCTCTC
 
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rJMSF001E23+          AGCATGGAAGATTTAAAATACGCACACGAACAGGTATGTGCGAGCGTGTCATCGGAGTCG
rJMSF036C04+          AGCATGGAAGATTTAAAATACGCACACGAACAGGTATGTGCGAGCGTGTCATCGGAGTCG
                      ____________________________________________________________
consensus             AGCATGGAAGATTTAAAATACGCACACGAACAGGTATGTGCGAGCGTGTCATCGGAGTCG
 
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rJMSF001E23+          ACAAACATGAACGAGCTCCTGCAGTGGAATGATCTATACGGAGAAGGTGGATCCAGGAAG
rJMSF036C04+          ACAAACATGAACGAGCTCCTGCAGTGGAATGATCTATACGGAGAAGGTGGATCCAGGAAG
                      ____________________________________________________________
consensus             ACAAACATGAACGAGCTCCTGCAGTGGAATGATCTATACGGAGAAGGTGGATCCAGGAAG
 
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rJMSF001E23+          ACGAAAGCTCTCAGCTACTTCATGTAG                                 
rJMSF036C04+          ACGAAAGCTCTCAGCTACTTCATGTAGAGAGGGGATTTCTTTCTCAAGTGTATAGCTTAT
                      ____________________________________________________________
consensus             ACGAAAGCTCTCAGCTACTTCATGTAGAGAGGGGATTTCTTTCTCAAGTGTATAGCTTAT
 
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rJMSF036C04+          TGTAGAGAGATGTTTAGGTAGTCAAAATCTTCTTCATGGTGGGAATGGGGCCTTAATGCA
                      ____________________________________________________________
consensus             TGTAGAGAGATGTTTAGGTAGTCAAAATCTTCTTCATGGTGGGAATGGGGCCTTAATGCA
 
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rJMSF036C04+          TGGAAATTCCAGTTTCAGGTCCCTTTAGATTAAGAATTTCTTTCTTCAACCAGGCGTGTA
                      ____________________________________________________________
consensus             TGGAAATTCCAGTTTCAGGTCCCTTTAGATTAAGAATTTCTTTCTTCAACCAGGCGTGTA
 
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rJMSF036C04+          TCATATTTCAATTTAACTTTAATAATTTATAGGTGGTTTTGACTTGTCAAATTAATTATT
                      ____________________________________________________________
consensus             TCATATTTCAATTTAACTTTAATAATTTATAGGTGGTTTTGACTTGTCAAATTAATTATT