Contig 011368:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024C23Sequence597013083 (9)gb|KDP28329.1|7e-74hypothetical protein JCGZ_14100 [Jatropha curcas]728011368 (2)ref|XP_004246212.2|9e-13PREDICTED: AP-4 complex subunit epsilon [Solanum lycopersicum]
JMSF035K02Sequence654013083 (9)gb|KDP28329.1|1e-103hypothetical protein JCGZ_14100 [Jatropha curcas]646011368 (2)ref|XP_009612475.1|1e-13PREDICTED: AP-4 complex subunit epsilon isoform X1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF024C23+                                           GAGACACGACTTCAAGTGGCAGAGTGA
                      ____________________________________________________________
consensus                                              GAGACACGACTTCAAGTGGCAGAGTGA
 
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rJMSF024C23+          AGNTGGTGTTATAAACCCTCTGTCAACTGGCACCGGCAACACAAGTCTCATGTTTGGATT
                      ____________________________________________________________
consensus             AGNTGGTGTTATAAACCCTCTGTCAACTGGCACCGGCAACACAAGTCTCATGTTTGGATT
 
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rJMSF024C23+          TTCCGATGCATCTGACAGAAATGGTCATGGAGGAAATACAACACCACAGCT-GCATCACC
rJMSF035K02+                       GACAGAAATGGTCATGGAGGAAATACAACACCNCAGCTGGCATCNCC
                      ____________________________________________________________
consensus             TTCCGATGCATCTGACAGAAATGGTCATGGAGGAAATACAACACCACAGCTGGCATCACC
 
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rJMSF024C23+          AAATAGCAAGGGACCAAATCCTAGAGATGCTATAGAAAAGGACGCTCTCGTGAGGCAAAT
rJMSF035K02+          AAATAGCAAGGGACCAAATCCTAGAGATGCTATAGAAAAGGACGCTCTCGTGAGGCAAAT
                      ____________________________________________________________
consensus             AAATAGCAAGGGACCAAATCCTAGAGATGCTATAGAAAAGGACGCTCTCGTGAGGCAAAT
 
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rJMSF024C23+          GGGCGTAACACCATCAACTCAGAATCCCNACCTGTTCAGTGACCTACTTGGATAGATTTT
rJMSF035K02+          GGGCGTAACACCATCAACTCAGAATCCCAACCTGTTCAGTGACCTACTTGGATAGATTNT
                      ____________________________________________________________
consensus             GGGCGTAACACCATCAACTCAGAATCCCAACCTGTTCAGTGACCTACTTGGATAGATTTT
 
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rJMSF024C23+          AAGNTATTGGACANGCTGGTTAAAGTTCAATCGAAATTTCTTCAGATTACACACCGAGTT
rJMSF035K02+          AAGTTATTGGACANGCTGGTTAAAGTTCAATCGAAATTTNTTCAGATTACACACCGAGTT
                      ____________________________________________________________
consensus             AAGTTATTGGACANGCTGGTTAAAGTTCAATCGAAATTTCTTCAGATTACACACCGAGTT
 
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rJMSF024C23+          AAGTTAAGCAACCTGGTTCCCCAAGCGGCTTGCAAAGCTGGAGGCATTTATTTTTATGTC
rJMSF035K02+          AAGTTAAGCAACCTGGTTCCCCAAGCGNCTTGCAAAGCTGGAGGCATTTATTTTTATGTC
                      ____________________________________________________________
consensus             AAGTTAAGCAACCTGGTTCCCCAAGCGGCTTGCAAAGCTGGAGGCATTTATTTTTATGTC
 
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rJMSF024C23+          AAAAACACCAGCTCACAACAATCTCGCTGGAGAAACCAGAGAATGGGGTTAGGTTACCCT
rJMSF035K02+          AAAAACACCAGCTCACAACAATCTCGCTGGAGAAACCAGAGAATGGGGTTAGGTTACCCT
                      ____________________________________________________________
consensus             AAAAACACCAGCTCACAACAATCTCGCTGGAGAAACCAGAGAATGGGGTTAGGTTACCCT
 
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rJMSF024C23+          ACCTAACCNGGAGTTGTTTGTATCAGTTGCATGGCAATATAGTTTTGTGTAGATAGTAAA
rJMSF035K02+          ACCTAACCNGGAGTTGTTTGTATCAGTNGCACGGCAATATAGTTNTGTGTAGATAGTAAA
                      ____________________________________________________________
consensus             ACCTAACCNGGAGTTGTTTGTATCAGTTGCATGGCAATATAGTTTTGTGTAGATAGTAAA
 
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rJMSF024C23+          GCCTGGTAGAGAAAGTGCAGGGGCAGCTGAACTATATATATATATATATATAGTCTTCCC
rJMSF035K02+          GCCTGGTAGAGAAAGTGCAGGGGCAGCTGAACTATATATATATATATATATAGTCTTCCC
                      ____________________________________________________________
consensus             GCCTGGTAGAGAAAGTGCAGGGGCAGCTGAACTATATATATATATATATATAGTCTTCCC
 
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rJMSF024C23+          TTGTGCTCGATTTCGACCAAGTTCTTGGAGTATTTCAGAATCATAAAGGCTGGCTTGCAT
rJMSF035K02+          TTGTGCTCGATTTCGACCAAGTTCTTGGAGTATTTCAGAATCATAAAGGCTGGCTNGCAT
                      ____________________________________________________________
consensus             TTGTGCTCGATTTCGACCAAGTTCTTGGAGTATTTCAGAATCATAAAGGCTGGCTTGCAT
 
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rJMSF024C23+          GTTACATTACTGTGATTGAATTTCAGTGTTCTTTAAACGCAC-ATGCTCTTAGTAGTTCT
rJMSF035K02+          GTTACATTACTGTGANTGAATTTCAGTGTTCTTTAAACGCACAATGCTCTTAGTAGTTCT
                      ____________________________________________________________
consensus             GTTACATTACTGTGATTGAATTTCAGTGTTCTTTAAACGCACAATGCTCTTAGTAGTTCT
 
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rJMSF024C23+          TTATGCATGCATGTATTCTTTTTTGGGTTAGATTTTGATCAAT                 
rJMSF035K02+          TTATGCAT-CATGTATTCTTTTTTGGGTTAGATTTTGATCAATTGACCGGAAGAGATTGC
                      ____________________________________________________________
consensus             TTATGCATGCATGTATTCTTTTTTGGGTTAGATTTTGATCAATTGACCGGAAGAGATTGC