Contig 011364:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF034M02-                      TGAAGCCCAGACTCCAGACACGGTGAAAAGCCTCCCAAAACCCCCACTC
JMSF050O03-                       GAAGCCCAGACTCCAGACACGGTGAAAAGCCTCCCAAAACCCCCACTC
                      ____________________________________________________________
consensus                        TGAAGCCCAGACTCCAGACACGGTGAAAAGCCTCCCAAAACCCCCACTC
 
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JMSF034M02-           ACGCCGGTGTCCGCTGGTTCCATCTTCCCTGAAGTTCTCCTGATCCATCTTTTATCTGTT
JMSF050O03-           ACGCCGGTGTCCGCTGGTTCCATCTTCCCTGAAGTTCTCCTGATCCATCTTTTATCTGTT
                      ____________________________________________________________
consensus             ACGCCGGTGTCCGCTGGTTCCATCTTCCCTGAAGTTCTCCTGATCCATCTTTTATCTGTT
 
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JMSF034M02-           CTTATAAAAAACGCACGCACTGCAAATTCACATATCTTTTTTCACTTCGGTCGCGATTCT
JMSF050O03-           CTTATAAAAAACGCACGCACTGCAAATTCACATATCTTTTTTCACTTCGGTCGCGATTCT
                      ____________________________________________________________
consensus             CTTATAAAAAACGCACGCACTGCAAATTCACATATCTTTTTTCACTTCGGTCGCGATTCT
 
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JMSF034M02-           CCACTGATTCTGTAACCCTAAATTCAGGGATCCTAGACTGGTGGAATAGCGAAGATGTTT
JMSF050O03-           CCACTGATTCTGTAACCCTAAATTCAGGGATCCTAGACTGGTGGAATAGCGAAGATGTTT
                      ____________________________________________________________
consensus             CCACTGATTCTGTAACCCTAAATTCAGGGATCCTAGACTGGTGGAATAGCGAAGATGTTT
 
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JMSF034M02-           TCTCGGATTTTTGGCAAACCAAAGCAGGAAACTAATGCTCTCTCGACTCTAGATAAACTG
JMSF050O03-           TCTCGGATTTTTGGCAAACCAAAGCAGGAAACTAATGCTCTCTCGACTCTAGATAAACTG
                      ____________________________________________________________
consensus             TCTCGGATTTTTGGCAAACCAAAGCAGGAAACTAATGCTCTCTCGACTCTAGATAAACTG
 
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JMSF034M02-           AACGAGACACTGGAGATGCTTGAGAAGAAGGAGAAAGTACTTCAAAAGAAGGCCTCTTCA
JMSF050O03-           AACGAGACACTGGAGATGCTTGAGAAGAAGGAGAAAGTACTTCAAAAGAAGGCCTCTTCA
                      ____________________________________________________________
consensus             AACGAGACACTGGAGATGCTTGAGAAGAAGGAGAAAGTACTTCAAAAGAAGGCCTCTTCA
 
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JMSF034M02-           GAAGTTGAAAGGGCTAAAGATTTTACAAAAGCAAAGAACAAGAGAGCGGCTATTCAATGT
JMSF050O03-           GAAGTTGAAAGGGCTAAAGATTTTACAAAAGCAAAGAACAAGAGAGCGGCTATTCAATGT
rJMSF050O03+                                                             ATTCAATGT
                      ____________________________________________________________
consensus             GAAGTTGAAAGGGCTAAAGATTTTACAAAAGCAAAGAACAAGAGAGCGGCTATTCAATGT
 
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JMSF034M02-           TTGAAAAGGAAGAGGCTCTATGAGCAGCAAATTGAGCAGCTTGGAAATTTCCAGTTGCGC
JMSF050O03-           TTGAAAAGGAAGAGGCTCTATGAGCAGCAAATTGAGCAGCTTGGAAATTTCCAGTTGCGC
rJMSF050O03+          TTGAAAAGGAAGAGGCTCTATGAGCAGCAAATTGAGCAGCTTGGAAATTTCCAGTTGCGC
rJMSF034M02+                                          TGAGCAGCTTGGAAATTTCCAGTTGCGC
                      ____________________________________________________________
consensus             TTGAAAAGGAAGAGGCTCTATGAGCAGCAAATTGAGCAGCTTGGAAATTTCCAGTTGCGC
 
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JMSF034M02-           ATCCATGATCAGATGATAATGCTTGAAGGAGCAAAAGCTACAACCGAAACTGTAGATGCC
JMSF050O03-           ATCCATGATCAGATGATAATGCTTGAAGGAGCAAAAGCTACAACCGAAACTGTAGATGCC
rJMSF050O03+          ATCCATGATCAGATGATAATGCTTGAAGGAGCAAAAGCTACAACCGAAACTGTAGATGCC
rJMSF034M02+          ATCCATGATCAGATGATAATGCTTGAAGGAGCAAAAGCTACAACCGAAACTGTAGATGCC
                      ____________________________________________________________
consensus             ATCCATGATCAGATGATAATGCTTGAAGGAGCAAAAGCTACAACCGAAACTGTAGATGCC
 
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JMSF034M02-           CTTAGAACTGGGGCAGCGGCAATGAAAGCAATGCAAAAAGCCACGAATATTGATGACGTG
JMSF050O03-           CTTAGAACTGGGGCAGCGGCAATGAAAGCAATGCAAAAAGCCACGAATATTGATGACGTG
rJMSF050O03+          CTTAGAACTGGGGCAGCGGCAATGAAAGCAATGCAAAAAGCCACGAATATTGATGACGTG
rJMSF034M02+          CTTAGAACTGGGGCAGCGGCAATGAAAGCAATGCAAAAAGCCACGAATATTGATGACGTG
                      ____________________________________________________________
consensus             CTTAGAACTGGGGCAGCGGCAATGAAAGCAATGCAAAAAGCCACGAATATTGATGACGTG
 
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JMSF034M02-           GACAAGACAATGGATGAGATAAATGAACAGACTGAGAACA                    
JMSF050O03-           GACAAGACAATGGATGAGATAAATGAACAGACTGAGAACATGAAAATGATTCAGGAAGCA
rJMSF050O03+          GACAAGACAATGGATGAGATAAATGAACAGACTGAGAACATGAAAATGATTCAGGAAGCA
rJMSF034M02+          GACAAGACAATGGATGAGATAAATGAACAGACTGAGAACATGAAAATGATTCAGGAAGCA
                      ____________________________________________________________
consensus             GACAAGACAATGGATGAGATAAATGAACAGACTGAGAACATGAAAATGATTCAGGAAGCA
 
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JMSF050O03-           TTATCAACTCCNATGAGTGCAGTGGACTTTGATGA                         
rJMSF050O03+          TTATCAACTCCAATGAGTGCAGTGGACTTTGATGAGGATGAACTGGAAGCTGAACTTGAA
rJMSF034M02+          TTATCAACTCCAATGAGTGCAGTGGACTTTGATGAGGATGAACTGGAAGCTGAACTTGAA
                      ____________________________________________________________
consensus             TTATCAACTCCAATGAGTGCAGTGGACTTTGATGAGGATGAACTGGAAGCTGAACTTGAA
 
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rJMSF050O03+          GAATTGGAAGGTGCTGACTTGGAAGAAGAACTTCTTCAACCAGCAACCACTGCCCCTGCC
rJMSF034M02+          GAATTGGAAGGTGCTGACTTGGAAGAAGAACTTCTTCAACCAGCAACCACTGCCCCTGCC
                      ____________________________________________________________
consensus             GAATTGGAAGGTGCTGACTTGGAAGAAGAACTTCTTCAACCAGCAACCACTGCCCCTGCC
 
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rJMSF050O03+          GCACCAGTGCATGTCCCAGCAGGCAAACAAGCAGCACGCCCAGTTCCTCATAGGAACACC
rJMSF034M02+          GCACCAGTGCATGTCCCAGCAGGCAAACAAGCAGCACGCCCAGTTCCTCATAGGAACACC
                      ____________________________________________________________
consensus             GCACCAGTGCATGTCCCAGCAGGCAAACAAGCAGCACGCCCAGTTCCTCATAGGAACACC
 
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rJMSF050O03+          GCTGAGGATGATGAACTTGAAGCATTGCAAAAGGAAATGGCGCTTTGAGCTAAATCCTTA
rJMSF034M02+          GCTGAGGATGATGAACTTGAAGCATTGCAAAAGGAAATGGCGCTTTGAGCTAAATCCTTA
                      ____________________________________________________________
consensus             GCTGAGGATGATGAACTTGAAGCATTGCAAAAGGAAATGGCGCTTTGAGCTAAATCCTTA
 
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rJMSF050O03+          CGATATCTTGACCACCAGGACGTAGTACGCTGGGAATGATGGCAGGAACAAAAAGGGAAA
rJMSF034M02+          CGATATCTTGACCACCAGGACGTAGTACGCTGGGAATGATGGCAGGAACAAAAAGGGAAA
                      ____________________________________________________________
consensus             CGATATCTTGACCACCAGGACGTAGTACGCTGGGAATGATGGCAGGAACAAAAAGGGAAA
 
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rJMSF050O03+          CCTCCTACCTTGGATGGTCATGAACTCTTAATTTCGGTTGTACTATATCCACATTCCATG
rJMSF034M02+          CCTCCTACCTTGGATGGTCATGAACTCTTAATTTCGGTTGTACTATATCCACATTCCATG
                      ____________________________________________________________
consensus             CCTCCTACCTTGGATGGTCATGAACTCTTAATTTCGGTTGTACTATATCCACATTCCATG
 
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rJMSF050O03+          ATTTGTGAC-AAAAAAATTGCCATCAATTCATTAGTTTTGGTCATTATGGAGTGTTTAAA
rJMSF034M02+          ATTTGTGACAAAAAAAATTGCCATCAATTCATTAGTTTTGGTCATTATGGAGTGTTTAAA
                      ____________________________________________________________
consensus             ATTTGTGACAAAAAAAATTGCCATCAATTCATTAGTTTTGGTCATTATGGAGTGTTTAAA
 
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rJMSF050O03+          TTACTGTCCAGGTCAATATCCTTTGTACATGTATCCGTCTATCGTAGTATGTTCTGCCC 
rJMSF034M02+          TTACTGTCCAGGTCAATATCCTTTGTACATGCATCCGTCTATCGTAGTATGTTCTGCCCA
                      ____________________________________________________________
consensus             TTACTGTCCAGGTCAATATCCTTTGTACATGTATCCGTCTATCGTAGTATGTTCTGCCCA