Contig 011360:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033F11Sequence663011360 (2)ref|XP_002270134.1|6e-15PREDICTED: transcription repressor OFP1 [Vitis vinifera]696011360 (2)ref|XP_009780345.1|3e-52PREDICTED: transcription repressor OFP1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF033F11-                     GGTTGAGTCACACTCTTAAAAGAAAGACAGAAGCATAGTAAAATCAAGAA
                      ____________________________________________________________
consensus                       GGTTGAGTCACACTCTTAAAAGAAAGACAGAAGCATAGTAAAATCAAGAA
 
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JMSF033F11-           ACAGAGAGAGAAAGTTGGGGATGGGAAATCATAGGTTTAGATTATCAGACATGATACCAA
                      ____________________________________________________________
consensus             ACAGAGAGAGAAAGTTGGGGATGGGAAATCATAGGTTTAGATTATCAGACATGATACCAA
 
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JMSF033F11-           ATGCTTGGTTTCACAAGCTGAAGGGCATGGGCAAGGCCAAAAAAAGTGGAAAGAATCACA
                      ____________________________________________________________
consensus             ATGCTTGGTTTCACAAGCTGAAGGGCATGGGCAAGGCCAAAAAAAGTGGAAAGAATCACA
 
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JMSF033F11-           ACAACAACAACAATTGTATCAAAAAACATGAAAACCATCCCCCCACATTATCATCATCAT
                      ____________________________________________________________
consensus             ACAACAACAACAATTGTATCAAAAAACATGAAAACCATCCCCCCACATTATCATCATCAT
 
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JMSF033F11-           CATTATCCTCATCATCCTATTCATCATCAACCAAAACCACAACAACCCACAGAAAATCCT
                      ____________________________________________________________
consensus             CATTATCCTCATCATCCTATTCATCATCAACCAAAACCACAACAACCCACAGAAAATCCT
 
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JMSF033F11-           ACTACTTCTCCAGGCCGCCACCCCACATTTCGCCGGAAACTTCAAGAAAATCCTCCAAGA
                      ____________________________________________________________
consensus             ACTACTTCTCCAGGCCGCCACCCCACATTTCGCCGGAAACTTCAAGAAAATCCTCCAAGA
 
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JMSF033F11-           AACGCCCCAAGAGGAGGACCAGCAGTAGAACAACCGCCGTCTCCGCCGCTTGCAGCTGCC
                      ____________________________________________________________
consensus             AACGCCCCAAGAGGAGGACCAGCAGTAGAACAACCGCCGTCTCCGCCGCTTGCAGCTGCC
 
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JMSF033F11-           GCCCGTCCATGGAATCCGTCTGGACTAAGCCCGATTCCACCCCTGAAGACTATCCGGATT
rJMSF033F11+                                  CTAAGCCCGATTCCACCCCTGAAGACTATCCGGATT
                      ____________________________________________________________
consensus             GCCCGTCCATGGAATCCGTCTGGACTAAGCCCGATTCCACCCCTGAAGACTATCCGGATT
 
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JMSF033F11-           CCCCCCTCGACAGCAGCACCTCCTCCTCCTCCGACCAAGATTCCCTCGCCCCCCGCCGCG
rJMSF033F11+          CCCCCCTCGACAGCAGCACCTCCTCCTCCTCCGACCAAGATTCCCTCGCCCCCCGCCGCG
                      ____________________________________________________________
consensus             CCCCCCTCGACAGCAGCACCTCCTCCTCCTCCGACCAAGATTCCCTCGCCCCCCGCCGCG
 
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JMSF033F11-           CCCCCTCCGCCGCCACGCCTGAAACCTTCGACGCAATGCTCTCCCTCTCCCCCGATGATG
rJMSF033F11+          CCCCCTCCGCCGCCACGCCTGAAACCTTCGACGCAATGCTCTCCCTCTCCCCCGATGATG
                      ____________________________________________________________
consensus             CCCCCTCCGCCGCCACGCCTGAAACCTTCGACGCAATGCTCTCCCTCTCCCCCGATGATG
 
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JMSF033F11-           AACTTCACGACTTCGACACCGTTTCAAAAATCGACCTCCCTCCCATCATCACAAAGCCCG
rJMSF033F11+          AACTTCACGACTTCGACACCGTTTCAAAAATCGACCTCCCTCCCATCATCACAAAGCCCG
                      ____________________________________________________________
consensus             AACTTCACGACTTCGACACCGTTTCAAAAATCGACCTCCCTCCCATCATCACAAAGCCCG
 
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JMSF033F11-           CCNACAATTTA                                                 
rJMSF033F11+          CCAACAATTTAAGGACGAAAACCCAATCAAATCAATCATGCAAGACAGCCAAAACCTCCG
                      ____________________________________________________________
consensus             CCAACAATTTAAGGACGAAAACCCAATCAAATCAATCATGCAAGACAGCCAAAACCTCCG
 
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rJMSF033F11+          ACAAAGAGCAGAGGGCGTGCCCTGTTCGCAGATTCTCCGGGAACTCGCCGGGCGTGAAAC
                      ____________________________________________________________
consensus             ACAAAGAGCAGAGGGCGTGCCCTGTTCGCAGATTCTCCGGGAACTCGCCGGGCGTGAAAC
 
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rJMSF033F11+          TGAGAACAAATTCTCCGAGAATCGGTGGCAACCACCGGAGAATCCTGCAGGGCAGAAGAA
                      ____________________________________________________________
consensus             TGAGAACAAATTCTCCGAGAATCGGTGGCAACCACCGGAGAATCCTGCAGGGCAGAAGAA
 
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rJMSF033F11+          GCACGAGCATTGCGGCGAAAAGCTTCGCCGTTGTGAAGTCATCTAAGGATCCACAGAGGG
                      ____________________________________________________________
consensus             GCACGAGCATTGCGGCGAAAAGCTTCGCCGTTGTGAAGTCATCTAAGGATCCACAGAGGG
 
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rJMSF033F11+          ATTTCAGGGAATCAATGGTGGAGATGATAGTGGAGAACAACATCAGAGCATCGAAAGACT
                      ____________________________________________________________
consensus             ATTTCAGGGAATCAATGGTGGAGATGATAGTGGAGAACAACATCAGAGCATCGAAAGACT
 
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rJMSF033F11+          TGGAAAATCTTCTTGCTTGCTATCTGTCTCTCAACTCTAATGAGTACCATGATTTGATCA
                      ____________________________________________________________
consensus             TGGAAAATCTTCTTGCTTGCTATCTGTCTCTCAACTCTAATGAGTACCATGATTTGATCA
 
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rJMSF033F11+          TCAAGGTGTTCAAACAAATCTGGTTTGATATCACCGATGTTAGGTTAAATTAAAGTAACT
                      ____________________________________________________________
consensus             TCAAGGTGTTCAAACAAATCTGGTTTGATATCACCGATGTTAGGTTAAATTAAAGTAACT
 
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rJMSF033F11+          ATTTTATTTTCTGTTAGTTGTAATAATATGTAAATTAGCTGCAGTTATCATCAGTAATTT
                      ____________________________________________________________
consensus             ATTTTATTTTCTGTTAGTTGTAATAATATGTAAATTAGCTGCAGTTATCATCAGTAATTT