Contig 011359:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF032L22Sequence662011359 (2)ref|XP_009591157.1|1e-85PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Nicotiana 725011359 (2)ref|XP_009784072.1|4e-100PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Nicotiana

Alignment

This contig is upended


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JMSF032L22-                                                           GGTGGATGAAAT
                      ____________________________________________________________
consensus                                                             GGTGGATGAAAT
 
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JMSF032L22-           AAATACAAATTATTAAGTTTTCTTCCTCTGGTCTTTCTCTAAATTTCTTCCCCTTTCTTC
                      ____________________________________________________________
consensus             AAATACAAATTATTAAGTTTTCTTCCTCTGGTCTTTCTCTAAATTTCTTCCCCTTTCTTC
 
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JMSF032L22-           TGCAAGTCTTTTCTTCACACAAAAATGGGTGCTACTAAGGTTACAGATGATGGAACCTAT
                      ____________________________________________________________
consensus             TGCAAGTCTTTTCTTCACACAAAAATGGGTGCTACTAAGGTTACAGATGATGGAACCTAT
 
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JMSF032L22-           GACAGAACAACCGAAATCAAAACATTCGACGAGACGAAAGCCGGCGTTAAGGGTCTAGTC
                      ____________________________________________________________
consensus             GACAGAACAACCGAAATCAAAACATTCGACGAGACGAAAGCCGGCGTTAAGGGTCTAGTC
 
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JMSF032L22-           GACGCCGGAATCACCAAAGTTCCTCGGATGTTTTACACTCCGCCGGATCCCTTTGTTCAG
                      ____________________________________________________________
consensus             GACGCCGGAATCACCAAAGTTCCTCGGATGTTTTACACTCCGCCGGATCCCTTTGTTCAG
 
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JMSF032L22-           GCATCATCAGACAAAACCGGCCGTTTCAGTATTCCGGTGATAGACCTGCAGGGCATATAC
                      ____________________________________________________________
consensus             GCATCATCAGACAAAACCGGCCGTTTCAGTATTCCGGTGATAGACCTGCAGGGCATATAC
 
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JMSF032L22-           AACAGTAGTGGGGATGGTTCAGTGCAACGTAGGGAGGTGGTCGACAAGGTCCGAGGTGCA
                      ____________________________________________________________
consensus             AACAGTAGTGGGGATGGTTCAGTGCAACGTAGGGAGGTGGTCGACAAGGTCCGAGGTGCA
 
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JMSF032L22-           TCGGAGGTGTGGGGGTTTTTCCAGGTGGTCAATCATGGGATTCCTGCCAGTATCCTGGAA
                      ____________________________________________________________
consensus             TCGGAGGTGTGGGGGTTTTTCCAGGTGGTCAATCATGGGATTCCTGCCAGTATCCTGGAA
 
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JMSF032L22-           GAGATGTTGGGTGGTACCAGGAGATTCTATGAACAAGATAGTGAGGTGAAGAAACAATGG
                      ____________________________________________________________
consensus             GAGATGTTGGGTGGTACCAGGAGATTCTATGAACAAGATAGTGAGGTGAAGAAACAATGG
 
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JMSF032L22-           TACACGCGAGACAGTTCGAAGAGAGTTGTTTATAACAGCAACTTTGATTTGTATAGTGCA
                      ____________________________________________________________
consensus             TACACGCGAGACAGTTCGAAGAGAGTTGTTTATAACAGCAACTTTGATTTGTATAGTGCA
 
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JMSF032L22-           GGCTCCGCTAACTGGAGGGACACAACTTACTGCAGCATGGCTCCTTATCCTCCCAGTCCA
rJMSF032L22+                                                                 GTCCA
                      ____________________________________________________________
consensus             GGCTCCGCTAACTGGAGGGACACAACTTACTGCAGCATGGCTCCTTATCCTCCCAGTCCA
 
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JMSF032L22-           GATGAATTGCCAGANGCCTGTAGAGATATACTGATTGAGTACTCTGAGC           
rJMSF032L22+          GATGNATTGCCAGAGGCCTGTAGAGATATACTGATTGAGTACTCTGAGCCAAGTTAAGAA
                      ____________________________________________________________
consensus             GATGAATTGCCAGAGGCCTGTAGAGATATACTGATTGAGTACTCTGAGCCAAGTTAAGAA
 
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rJMSF032L22+          GTTAGGGCTTACCTTATTTGGTTTGCTTTCTGAGGCTCTTGGCCTAAACCCGAACCATTT
                      ____________________________________________________________
consensus             GTTAGGGCTTACCTTATTTGGTTTGCTTTCTGAGGCTCTTGGCCTAAACCCGAACCATTT
 
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rJMSF032L22+          GAATGAGATTGGGTGCCCGGAAGGACTAGCCGTTCTGTACCATTACTATCCAGCATGCCC
                      ____________________________________________________________
consensus             GAATGAGATTGGGTGCCCGGAAGGACTAGCCGTTCTGTACCATTACTATCCAGCATGCCC
 
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rJMSF032L22+          TGAACCAGAACTAACCATTGGAGCCAGCAAGCATTCTGATTCTGACTTCATGACAGTCCT
                      ____________________________________________________________
consensus             TGAACCAGAACTAACCATTGGAGCCAGCAAGCATTCTGATTCTGACTTCATGACAGTCCT
 
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rJMSF032L22+          ACTACAAGACCATATTGGAGGCCTTCAAATCCTCCATGACAATCTTTGGGTTGATGTTCC
                      ____________________________________________________________
consensus             ACTACAAGACCATATTGGAGGCCTTCAAATCCTCCATGACAATCTTTGGGTTGATGTTCC
 
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rJMSF032L22+          CCCTGTACCCGGAGCTTTAGTCATAAACATTGGTGATCTCTTACAGCTGATATCAAATGA
                      ____________________________________________________________
consensus             CCCTGTACCCGGAGCTTTAGTCATAAACATTGGTGATCTCTTACAGCTGATATCAAATGA
 
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rJMSF032L22+          CAGGTTCAAGAGTGTTGCACACAGAGTGGTGGCCAGTGATGTTGGTCCAAGGGTATCAGT
                      ____________________________________________________________
consensus             CAGGTTCAAGAGTGTTGCACACAGAGTGGTGGCCAGTGATGTTGGTCCAAGGGTATCAGT
 
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rJMSF032L22+          GGCCAGCTTCTTCACCACCGGCCATGTACCATCATCAAGGATCTATGGTCCGATCAAGGA
                      ____________________________________________________________
consensus             GGCCAGCTTCTTCACCACCGGCCATGTACCATCATCAAGGATCTATGGTCCGATCAAGGA
 
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rJMSF032L22+          ATTGTTGTGTGAAGATAATCCTGCAAAGTATAGGGAAACTACAGTGAGAGACTACTCAGT
                      ____________________________________________________________
consensus             ATTGTTGTGTGAAGATAATCCTGCAAAGTATAGGGAAACTACAGTGAGAGACTACTCAGT
 
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rJMSF032L22+          TCACTATGATGCAACAGGGCTTGGAGGTAAATCTGCCTTGTTAGGTTTCAGGCTCTAGAT
                      ____________________________________________________________
consensus             TCACTATGATGCAACAGGGCTTGGAGGTAAATCTGCCTTGTTAGGTTTCAGGCTCTAGAT
 
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rJMSF032L22+          AAACTTTGTAGTACAGATTAGTATCAGTTTGGTTTGTATTAAGTAATTCTCAATACTTTA
                      ____________________________________________________________
consensus             AAACTTTGTAGTACAGATTAGTATCAGTTTGGTTTGTATTAAGTAATTCTCAATACTTTA
 
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rJMSF032L22+          CAATTAATTAATCATATGTTGTTGAGATTACAACTTGAGTCTTAAAGGCTGACCAATTGT
                      ____________________________________________________________
consensus             CAATTAATTAATCATATGTTGTTGAGATTACAACTTGAGTCTTAAAGGCTGACCAATTGT