Contig 011358:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN037G14Sequence565011358 (4)gb|AFB70982.1|3e-702-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Mitragyna speciosa]
JMSF032K22Sequence671011358 (4)gb|AFB70982.1|2e-942-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Mitragyna speciosa]702011358 (4)gb|ABV89583.1|8e-113plastid 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Rauvolfia vertici
JMSF036N16Sequence609011988 (4)gb|AAD20626.1|4e-113squalene synthase [Capsicum annuum]595011358 (4)gb|ABV89583.1|2e-91plastid 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Rauvolfia vertici

Alignment

This contig is upended


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JMFN037G14-                         GAAAACGGAGTCACTGTGAG-TGATAGTCGAAGCGTTTACTCTGAC
JMSF032K22-                      GACGAAAACGGAGTCACTGTGAGCTGATAGTCGAAGCGTTTACTCTGAC
                      ____________________________________________________________
consensus                        GACGAAAACGGAGTCACTGTGAGCTGATAGTCGAAGCGTTTACTCTGAC
 
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JMFN037G14-           AGAAGAAGATGGCTATGGCAACGTCGTCGTTTCACTGTGCGGCTCTGCTGCCCAGGAAGA
JMSF032K22-           AGAAGAAGATGGCTATGGCAACGTCGTCGTTTCACTGTGCGGCTCTGCTGCCCAGGAAGA
                      ____________________________________________________________
consensus             AGAAGAAGATGGCTATGGCAACGTCGTCGTTTCACTGTGCGGCTCTGCTGCCCAGGAAGA
 
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JMFN037G14-           GCTATTCGGAACGGCAGAGCTCTCTCAGTGTTAGCACCGGAATCTATGGACAGTCTATTT
JMSF032K22-           GCTATTCGGAACGGCAGAGCTCTCTCAGTGTTAGCACCGGAATCTATGGACAGTCTATTT
                      ____________________________________________________________
consensus             GCTATTCGGAACGGCAGAGCTCTCTCAGTGTTAGCACCGGAATCTATGGACAGTCTATTT
 
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JMFN037G14-           CGTTTAAGCCGCACGCGCCGTCGCTCGTGTTGTCTCCGAAGACCTCGCCCGCGGTGGTGT
JMSF032K22-           CGTTTAAGCCGCACGCGCCGTCGCTCGTGTTGTCTCCGAAGACCTCGCCCGCGGTGGTGT
                      ____________________________________________________________
consensus             CGTTTAAGCCGCACGCGCCGTCGCTCGTGTTGTCTCCGAAGACCTCGCCCGCGGTGGTGT
 
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JMFN037G14-           TCGCTTCCACTACCGCCGGCGCTATGGAAACTGAACCTCGAATAAGCGCCGCTACTCCGT
JMSF032K22-           TCGCTTCCACTACCGCCGGCGCTATGGAAACTGAACCTCGAATAAGCGCCGCTACTCCGT
rJMSF032K22+                            GCGCTATGGAAACTGAACCTCGAATAAGCGCCGCTACTCCGT
                      ____________________________________________________________
consensus             TCGCTTCCACTACCGCCGGCGCTATGGAAACTGAACCTCGAATAAGCGCCGCTACTCCGT
 
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JMFN037G14-           CAAAGTCGCTACCCTTCAGAGTGGGCCATGGCTTCGATCTCCACCGTTTGGAGCCGGGAT
JMSF032K22-           CAAAGTCGCTACCCTTCAGAGTGGGCCATGGCTTCGATCTCCACCGTTTGGAGCCGGGAT
rJMSF036N16+                                                 TCCACCGTTTGGAGCCGGGAT
rJMSF032K22+          CAAAGTCGCTACCCTTCAGAGTGGGCCATGGCTTCGATCTCCACCGTTTGGAGCCGGGAT
                      ____________________________________________________________
consensus             CAAAGTCGCTACCCTTCAGAGTGGGCCATGGCTTCGATCTCCACCGTTTGGAGCCGGGAT
 
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JMFN037G14-           ATCCTCTTATTGTTGGCGGAATAAACATTCCTCACGATAGAGGATGTGAAGCTCACTCCG
JMSF032K22-           ATCCTCTTATTGTTGGCGGAATAAACATTCCTCACGATAGAGGATGTGAAGCTCACTCCG
rJMSF036N16+          ATCCTCTTATTGNTGGCGGAATAAACATTCCTCNCGATAGNGGATGTGAAGCTCACTCCG
rJMSF032K22+          ATCCTCTTATTGTTGGCGGAATAAACATTCCTCACGATAGAGGATGTGAAGCTCACTCCG
                      ____________________________________________________________
consensus             ATCCTCTTATTGTTGGCGGAATAAACATTCCTCACGATAGAGGATGTGAAGCTCACTCCG
 
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JMFN037G14-           ACGGTGATGTGCTGCTTCATTGTATTGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCGG
JMSF032K22-           ACGGTGATGTGCTGCTTCATTGTATTGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCGG
rJMSF036N16+          ACGGTGATGTGCTGCTTCATTGTATTGTTGATGCAATTTTGGGTGNTTTGGGGCTTCCGG
rJMSF032K22+          ACGGTGATGTGCTGCTTCATTGTATTGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCGG
                      ____________________________________________________________
consensus             ACGGTGATGTGCTGCTTCATTGTATTGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCGG
 
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JMFN037G14-           ACATCGGTCAGATTTTTCCAGACAACGATCCTAAATGGAAAGGCGCCGCGTCGTCGGTTT
JMSF032K22-           ACATCGGTCAGATTTTTCCAGACAACGATCCTAAATGGAAAGGCGCCGCGTCGTCGGTTT
rJMSF036N16+          ACATCGGTCAGATTTTTCCAGACAACGATCCTAAATGGAAAGGCGCCGCGTCGTCGGTTT
rJMSF032K22+          ACATCGGTCAGATTTTTCCAGACAACGATCCTAAATGGAAAGGCGCCGCGTCGTCGGTTT
                      ____________________________________________________________
consensus             ACATCGGTCAGATTTTTCCAGACAACGATCCTAAATGGAAAGGCGCCGCGTCGTCGGTTT
 
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JMFN037G14-           TCATCAAAGAAGCTGTACGGCTGATGCACGAGGCTGGTTA                    
JMSF032K22-           TCATCAAAGAAGCTGTACGGCTGATGCACGAGGCTGGTTACGAAATTGGAAACTTAGATG
rJMSF036N16+          TCATCAAAGAAGCTGTACGGNTGATGCACGAGGCTGGTTACGAAATTGGAAACTTAGATG
rJMSF032K22+          TCATCAAAGAAGCTGTACGGCTGATGCACGAGGCTGGTTACGAAATTGGAAACTTAGATG
                      ____________________________________________________________
consensus             TCATCAAAGAAGCTGTACGGCTGATGCACGAGGCTGGTTACGAAATTGGAAACTTAGATG
 
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JMSF032K22-           CAACGTTGATCCTCCAAAAACCAAAGGTAAGCCCTCACAAGGAAGCAATTAGATCCAATT
rJMSF036N16+          CAACGTTGATCCTCCAAAAACCAAAGGTAAGCCCTCACAAGGAAGCAATTAGATCCAATT
rJMSF032K22+          CAACGTTGATCCTCCAAAAACCAAAGGTAAGCCCTCACAAGGAAGCAATTAGATCCAATT
                      ____________________________________________________________
consensus             CAACGTTGATCCTCCAAAAACCAAAGGTAAGCCCTCACAAGGAAGCAATTAGATCCAATT
 
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JMSF032K22-           TATGTGAGCTGCTTGGTGCAGA                                      
rJMSF036N16+          TATGTGAGCTGCTTGGTGCAGACCCCTCAGTTGTAAACCTGAAAGCAAAAANTCATGAGA
rJMSF032K22+          TATGTGAGCTGCTTGGTGCAGACCCCTCAGTTGTAAACCTGAAAGCAAAAACTCATGAGA
                      ____________________________________________________________
consensus             TATGTGAGCTGCTTGGTGCAGACCCCTCAGTTGTAAACCTGAAAGCAAAAACTCATGAGA
 
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rJMSF036N16+          AAGTAGNCAGCCTAGGGGAGAATAGGAGCATTGCAGCCCACACAGTTGTTCTTCTTATGA
rJMSF032K22+          AAGTAGACAGCCTAGGGGAGAATAGGAGCATTGCAGCCCACACAGTTGTTCTTCTTATGA
                      ____________________________________________________________
consensus             AAGTAGACAGCCTAGGGGAGAATAGGAGCATTGCAGCCCACACAGTTGTTCTTCTTATGA
 
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rJMSF036N16+          GGAAGTAGCAGATGGCCTTGTCTAATTCTTCATCAGGCTTCTTNTCATGGGATATTGGTA
rJMSF032K22+          GGAAGTAGCAGATGGCCTTGTCTAATTCTTCATCAGGCTTCTTCTCATGGGATATTGGTA
                      ____________________________________________________________
consensus             GGAAGTAGCAGATGGCCTTGTCTAATTCTTCATCAGGCTTCTTCTCATGGGATATTGGTA
 
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rJMSF036N16+          TTCAGACTACTTACAGGAAACNTATTGCTTCAACCTATATCTGGTAACCTAATCCCATTG
rJMSF032K22+          TTCAGACTACTTACAGGAAACATATTGCTTCAACCTATATTTGGTAACCTAATCCCATTG
                      ____________________________________________________________
consensus             TTCAGACTACTTACAGGAAACATATTGCTTCAACCTATATTTGGTAACCTAATCCCATTG
 
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rJMSF036N16+          GATGCATGTCTGGTTGTTGTACAAGTCCCCAGGG                          
rJMSF032K22+          GATGCATGTCTGGTTGTTGTACAAGTCCCCAGGGTATAGGTTCTGCAAACTTTGATAAAA
                      ____________________________________________________________
consensus             GATGCATGTCTGGTTGTTGTACAAGTCCCCAGGGTATAGGTTCTGCAAACTTTGATAAAA