Contig 011357:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS054A09Sequence636011357 (3)emb|CAN78050.1|5e-107hypothetical protein VITISV_015862 [Vitis vinifera]
JMSF032G01Sequence716006488 (5)ref|XP_004229502.1|3e-67PREDICTED: probable isoleucine--tRNA ligase, mitochondrial [Solanum lycopersicu577011357 (3)emb|CAN78050.1|6e-45hypothetical protein VITISV_015862 [Vitis vinifera]
JMSF047N04Sequence649006488 (5)ref|XP_004229502.1|3e-38PREDICTED: probable isoleucine--tRNA ligase, mitochondrial [Solanum lycopersicu569011357 (3)emb|CAN78050.1|1e-46hypothetical protein VITISV_015862 [Vitis vinifera]

Alignment

This contig is upended


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JMFS054A09-                                                  GAGTGCTAGTTTTACAAGGAG
                      ____________________________________________________________
consensus                                                    GAGTGCTAGTTTTACAAGGAG
 
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JMFS054A09-           AAGTTGTCAAACTGTCCTTGCTGCTCATTTACTTTCAATTGCAAGGATAGTTGCTCCAAT
                      ____________________________________________________________
consensus             AAGTTGTCAAACTGTCCTTGCTGCTCATTTACTTTCAATTGCAAGGATAGTTGCTCCAAT
 
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JMFS054A09-           TTTACCCCATTTGGCTGAGGATGTCTGGCAGCATCTTCCTTTCCCATATACTTCTGAAGA
                      ____________________________________________________________
consensus             TTTACCCCATTTGGCTGAGGATGTCTGGCAGCATCTTCCTTTCCCATATACTTCTGAAGA
 
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JMFS054A09-           TGGAAATGTAGCCACATTTGTCTTCGAGTCAGGTTGGCCAGAAACAAATGAAAGCCATCT
                      ____________________________________________________________
consensus             TGGAAATGTAGCCACATTTGTCTTCGAGTCAGGTTGGCCAGAAACAAATGAAAGCCATCT
 
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JMFS054A09-           TTCCTTCCCCGAGGAAGACATTGAATTCTGGGGAAAAGTTCTTGAGCTGAGGACGGAGGT
                      ____________________________________________________________
consensus             TTCCTTCCCCGAGGAAGACATTGAATTCTGGGGAAAAGTTCTTGAGCTGAGGACGGAGGT
 
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JMFS054A09-           GAACAAAGCACTCGAAGCTGCTCGAGGTGGGAAATTGATTGGTGCCAGTTTAGAGGCTAC
rJMSF047N04+                                 GAGGTGGGAAATTGATTGGTGCCAGTTTAGAGGCTAC
rJMSF032G01+                                 GAGGTGGGAAATTGATTGGTGCCAGTTTAGAGGNTAC
                      ____________________________________________________________
consensus             GAACAAAGCACTCGAAGCTGCTCGAGGTGGGAAATTGATTGGTGCCAGTTTAGAGGCTAC
 
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JMFS054A09-           GGTCTATCTGTACACTTCTGATAGTACATTGGCTGCACGGTTAAAGGAAGCATGCGAACC
rJMSF047N04+          GGTCTATCTGTACNCTTTTGATAGTACATTGGCTGCNCGGTTAAAGGAAGCATGCGAACC
rJMSF032G01+          GGTCTATCTGTACACTTNTGATAGTACATTGGCTGCNCGGTTAAAGGAAGCNTGCGAACC
                      ____________________________________________________________
consensus             GGTCTATCTGTACACTTTTGATAGTACATTGGCTGCACGGTTAAAGGAAGCATGCGAACC
 
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JMFS054A09-           CAAATATGATGCTGATGCATTGCATCGGATCTTTATAACATCCCAGGTGGAGGTCCTTTC
rJMSF047N04+          CAAATATGATGNTGATGCATTGCATNGGATCTTTATAACATCCCAGGNGGAGGTCCTTTC
rJMSF032G01+          CAAATATGATGNTGATGCNTTGCATCGGATCTTTATAACATCCCAGGNGGAGGTCCTTTC
                      ____________________________________________________________
consensus             CAAATATGATGCTGATGCATTGCATCGGATCTTTATAACATCCCAGGTGGAGGTCCTTTC
 
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JMFS054A09-           ATCCTTGGAAGATGAACGGGTTAAAGATATACGGTACACAGGAGAGTATCTTATAGAAGG
rJMSF047N04+          ATCCTTGGAAGATGAACGGGTTAAAGATATNCGGTACNCNGGAGAGTATNTTATAGAAGG
rJMSF032G01+          ATCCTTGGAAGATGAACGGGTTAAAGATATACGGTACNCNGGNGNGTNTNTTATAGAAGG
                      ____________________________________________________________
consensus             ATCCTTGGAAGATGAACGGGTTAAAGATATACGGTACACAGGAGAGTATCTTATAGAAGG
 
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JMFS054A09-           GGAGAGCAAAGTGTGGATCGGTGTATCACGTGCAAATGGCGAGAAATGTGAAAGATGCTG
rJMSF047N04+          GGAGAGCAAAGTGTGGATCGGTGTATCACGTGCAAATGGCGAGAAATGTGAAAGATGCTG
rJMSF032G01+          GGNGAGCAAAGTGTGGATCGGTGTATCACGTGCAAATGGCGAGAAATGTGAAAGATGCTG
                      ____________________________________________________________
consensus             GGAGAGCAAAGTGTGGATCGGTGTATCACGTGCAAATGGCGAGAAATGTGAAAGATGCTG
 
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JMFS054A09-           GAACTATTCACTTCAAGTTGGCTCCTTTGACGATCATCCTTCACTTTGCAGCCGATGTTA
rJMSF047N04+          GAACTATTCACTTCAAGTTGGCTCCTTTGACGATCATCCTTCACTTTGCAGCCGATGTTA
rJMSF032G01+          GAACTATTCACTTCAAGTTGGCTCCTTTGACGATCATCCTTCACTTTGCAGCCGATGTTA
                      ____________________________________________________________
consensus             GAACTATTCACTTCAAGTTGGCTCCTTTGACGATCATCCTTCACTTTGCAGCCGATGTTA
 
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JMFS054A09-           TGATGTCGTGAG                                                
rJMSF047N04+          TGATGTCGTGAGCGAAGTAGAAGCCCCTCCCGATGCAGAATATGCAGCAGGGGGTTCNCA
rJMSF032G01+          TGATGTCGTGAGNGAAGTAGAAGCCCCTCCCGATGCAGAATATGCAGCNGGGGGTTCNCA
                      ____________________________________________________________
consensus             TGATGTCGTGAGCGAAGTAGAAGCCCCTCCCGATGCAGAATATGCAGCAGGGGGTTCNCA
 
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rJMSF047N04+          AGAAAAACNAGCTCTTGTGCAATAAACATGTGGAATAGTTTGAAGTGTCTACTTATAGTG
rJMSF032G01+          AGAAAAACAAGCTNTTGTGCAATAAACATGTGGAATAGTTTGAAGNGTNTACTTATAGNG
                      ____________________________________________________________
consensus             AGAAAAACAAGCTCTTGTGCAATAAACATGTGGAATAGTTTGAAGTGTCTACTTATAGTG
 
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rJMSF047N04+          TATACAGCCNCNCAGTTATTGCNTTGTGCTTCAGAAAGGAGCCCCTTTTTATTTTTATTT
rJMSF032G01+          TATACANCCNCNCNGTTATTGCNTTGTGCTTCAGAAAGGAGCCCCTTTTTATTTTTATTT
                      ____________________________________________________________
consensus             TATACAGCCNCNCAGTTATTGCNTTGTGCTTCAGAAAGGAGCCCCTTTTTATTTTTATTT
 
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rJMSF047N04+          TTTTTTATAATTTTTATACTCTGTATTTTTTTTTT                         
rJMSF032G01+          TTTTTTATAATTTTTATACTCTGTATTTTTTTTTTTCTTGAGTCCATTGTATTTGACATA
                      ____________________________________________________________
consensus             TTTTTTATAATTTTTATACTCTGTATTTTTTTTTTTCTTGAGTCCATTGTATTTGACATA