Contig 011353:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF052E05+                                                         AAAGCTTGTAGTT
                      ____________________________________________________________
consensus                                                            AAAGCTTGTAGTT
 
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rJMSF052E05+          AGTGAAGATGGAAAAAAGGTCAAACGCCAGNATCCTCTGAGTGAAACAGATATGGAAGAA
                      ____________________________________________________________
consensus             AGTGAAGATGGAAAAAAGGTCAAACGCCAGNATCCTCTGAGTGAAACAGATATGGAAGAA
 
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rJMSF052E05+          TTGCAATCTCGCATAATTGTTGCTGAAAACCTGCCTGAGGATCACTGCCACCAGAACCTC
                      ____________________________________________________________
consensus             TTGCAATCTCGCATAATTGTTGCTGAAAACCTGCCTGAGGATCACTGCCACCAGAACCTC
 
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rJMSF052E05+          ATGAAGATTTTTTCAACCGTTGGAAGTGTGAAGATGATTCGTACCTGTCAGCCTCAGACT
                      ____________________________________________________________
consensus             ATGAAGATTTTTTCAACCGTTGGAAGTGTGAAGATGATTCGTACCTGTCAGCCTCAGACT
 
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rJMSF052E05+          TCCAATGGTGTGTCGTCATCAGGAACTAGAACAGCAAAGTCAGATAGTATGCTCCTCAGC
                      ____________________________________________________________
consensus             TCCAATGGTGTGTCGTCATCAGGAACTAGAACAGCAAAGTCAGATAGTATGCTCCTCAGC
 
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rJMSF052E05+          AACAAGTTGCATGCATTTGTCGAATACGAAACTGTTGAATTGGCTGAAAAAGCGGTTGCT
rJMSF036M08+                   CATGCATTTGTCGAATACGAAACTGTTGAATTGGCTGAAAAAGCGGTTGCT
rJMSF048M20+                   CATGCATTTGTCGNATACGAAACTGTTGAATTGGCTGAAAAAGCGGTTGCT
                      ____________________________________________________________
consensus             AACAAGTTGCATGCATTTGTCGAATACGAAACTGTTGAATTGGCTGAAAAAGCGGTTGCT
 
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rJMSF052E05+          GAGCTAAATGATGCGGGTGACTGGAGGAATCTCAAAGTTCGTATACTGGTTAGACGCACT
rJMSF036M08+          GAGCTAAATGATGCGGGTGACTGGAGGAATCTCAAAGTTCGTATACTGGTTAGACGCACT
rJMSF048M20+          GAGCTAAATGATGCGGGTGACTGGAGGAATCTCAAAGTTCGTATACTG------------
                      ____________________________________________________________
consensus             GAGCTAAATGATGCGGGTGACTGGAGGAATCTCAAAGTTCGTATACTGGTTAGACGCACT
 
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rJMSF052E05+          GCAAAATTGGCCCATACACGAGGAAAGAAGTTTGGTCATGATAGCGAGTCAAACTTCAAG
rJMSF036M08+          GCAAAATTGGCCCATACACGAGGAAAGAAGTTTGGTCATGATAGCGAGTCAAACTTCAAG
rJMSF048M20+          GCAAAATTGGCCCATACACGAGGAAAGAAGTTTGGTCATGATAGCGAGTCAAACTTCAAG
                      ____________________________________________________________
consensus             GCAAAATTGGCCCATACACGAGGAAAGAAGTTTGGTCATGATAGCGAGTCAAACTTCAAG
 
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rJMSF052E05+          GAAGAGGATGCATTTGCCCCCGAGCAGCAACTCTCGTTGCAACATACTGATTCTCAATCT
rJMSF036M08+          GAAGAGGATGCATTTGCCCCCGAGCAGCAACTCTCGTTGCAACATACTGATTCTCAATCT
rJMSF048M20+          GAAGAGGATGCATTTGCCCCCGAGCAGCAACTCTCGTTGCAACATACTGATTCTCAATCT
                      ____________________________________________________________
consensus             GAAGAGGATGCATTTGCCCCCGAGCAGCAACTCTCGTTGCAACATACTGATTCTCAATCT
 
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rJMSF052E05+          AATGGGCTTGCAGGAGTGGAAGAAAGTGATAAGGATGGGCCAAGGAGAACACGAAATCGT
rJMSF036M08+          AATGGGCTTGCAGGAGTGGAAGAAAGTGATAAGGATGGGCCAAGGAGAACACGAAATCGT
rJMSF048M20+          AATGGGCTTGCAGGAGTGGAAGAAAGTGATAAGGATGGGCCAAGGAGAACACGAAATCGT
rJMSF031P17+                                                                    GT
                      ____________________________________________________________
consensus             AATGGGCTTGCAGGAGTGGAAGAAAGTGATAAGGATGGGCCAAGGAGAACACGAAATCGT
 
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rJMSF052E05+          GGCAGTGGCAGGGGCAGGGGACGGCCGACTCCTAACAACAACCGTGGGAGCCTAGGAACT
rJMSF036M08+          GGCAGTGGCAGGGGCAGGGGACGGCCGACTCCTAACAACAACCGTGGGAGCCTAGGAACT
rJMSF048M20+          GGCAGTGGCAGGGGCAGGGGACGGCCGACTCCTAACAACAACCGTGGGAGCCTAGGAACT
rJMSF031P17+          GGCAGTGGCAGGGGCAGGGGACGGCCGACTCCTNACAACAACCGTGGGAGCCTAGGAACT
                      ____________________________________________________________
consensus             GGCAGTGGCAGGGGCAGGGGACGGCCGACTCCTAACAACAACCGTGGGAGCCTAGGAACT
 
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rJMSF052E05+          TCTTCAACATCAAATGGCAACCGAGGAAATCATAATGCACCACCTCCAAATCTCTCAGTC
rJMSF036M08+          TCTTCAACATCAAATGGCAACCGAGGAAATCATAATGCACCACCTCCAAATCTCTCAGTC
rJMSF048M20+          TCTTCAACATCAAATGGCAACCGAGGAAATC--AATGCACCACCTCCAAATCTCTCAGTC
rJMSF031P17+          TCTTCAACATCAAATGGCANCCGAGGAAATCATAATGCACCACCTCCAAATNTCTCAGTC
                      ____________________________________________________________
consensus             TCTTCAACATCAAATGGCAACCGAGGAAATCATAATGCACCACCTCCAAATCTCTCAGTC
 
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rJMSF052E05+          AATGCTGATCAGGCAACTACAGCCAAGCAACCCTCTGTGCCCCGAATGCCTGATGGCACT
rJMSF036M08+          AATGCTGATCAGGCAACTACAGCCAAGCAACCCTCTGTGCCCCGAATGCCTGATGGCACT
rJMSF048M20+          AATGCTGATCAGGCAACTACAGCCAAGCAACCCTCTGTGCCCCGAATGCCTGATGGCACT
rJMSF031P17+          AATGCTGATCAGGCAACTACAGCCAAGCAACCCTCTGTGCCCCGAATGCNTGATGGCACT
                      ____________________________________________________________
consensus             AATGCTGATCAGGCAACTACAGCCAAGCAACCCTCTGTGCCCCGAATGCCTGATGGCACT
 
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rJMSF052E05+          AAGGGATTCTCAATGGGTCGAGGAAAACCAGTCGCTGTGAAAACTGCTTGATGATGGGTT
rJMSF036M08+          AAGGGATTCTCAATGGGTCGAGGAAAACCAGTCGCTGTGAAAACTGCTTGATGATGGGTT
rJMSF048M20+          AAGGGATTCTCAATGGGTCGAGGAAAACCAGTCGCTGTGAAAACTGCTTGATGATGGGTT
rJMSF031P17+          AAGGGATTCTCAATGGGTCGAGGAAAACCAGTCGCTGTGAAAACTGCTTGATGATGGGTT
                      ____________________________________________________________
consensus             AAGGGATTCTCAATGGGTCGAGGAAAACCAGTCGCTGTGAAAACTGCTTGATGATGGGTT
 
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rJMSF052E05+          TGCTATTACAACAATAGCATGCATGTCTTGTGGGTGTTAGGCTGGTAATGTCTTCTTTTG
rJMSF036M08+          TGCTATTACAACAATAGCATGCATGTCTTGTGGGTGTTAGGCTGGTAATGTCTTCTTTTG
rJMSF048M20+          TGCTATTACAACAATAGCATGCATGTCTTGTGGGTGTTAGGCTGGTAATGTCTTCTTTTG
rJMSF031P17+          TGCTATTACAACAATAGCATGCATGTCTTGTGGGTGTTAGGCTGGTAATGTCTTCTTTTG
                      ____________________________________________________________
consensus             TGCTATTACAACAATAGCATGCATGTCTTGTGGGTGTTAGGCTGGTAATGTCTTCTTTTG
 
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rJMSF052E05+          TGCAGTATTAATGACACGGTTTTACTATTGCTGTCTGTCTAATAGAGCGGGACAGCTGGT
rJMSF036M08+          TGCAGTATTAATGACACGGTTTTACTATTGCTGTCTGTCTAATAGAGCGGGACAGCTGGT
rJMSF048M20+          TGCAGTATTAATGACACGGTTTTACTATTGCTGTCTGTCTAATAGAGCGGGACAGCTGGT
rJMSF031P17+          TGCAGTATTAATGACACGGTTTTACTATTGCTGTCTGTCTAATAGAGCGGGACAGCTGGT
                      ____________________________________________________________
consensus             TGCAGTATTAATGACACGGTTTTACTATTGCTGTCTGTCTAATAGAGCGGGACAGCTGGT
 
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rJMSF052E05+          AGTAATGCTATATCGGAGTTAGTTACTGTGTTGCGAGGGGTTGGTAT             
rJMSF036M08+          AGTAATGCTATATCGGAGTTAGTTACTGTGTTGCGAGGGGTTGGTATTGAAGAATCTACC
rJMSF048M20+          AGTAATGCTATATCGGAGTTAGTTACTGTGTTGCGAGGGGTTGGTATTGAAGAATCTACC
rJMSF031P17+          AGTAATGCTATATCGGAGTTAGTTACTGTGTTGCGAGGGGTTGGTATTGAAGAATCTACC
                      ____________________________________________________________
consensus             AGTAATGCTATATCGGAGTTAGTTACTGTGTTGCGAGGGGTTGGTATTGAAGAATCTACC
 
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rJMSF036M08+          AAGAATGAACATATGCACTTTTCTTTGTTTCGAAC                         
rJMSF048M20+          AAGAATGAACATATGCACTTTTCTTTGTTTCGAACCCTGTATATTAGAATAAACAGAACC
rJMSF031P17+          AAGAATGAACATATGCACTTTTCTTTGTTTCGAACCCTGTATATTAGAATAAACAGAACC
                      ____________________________________________________________
consensus             AAGAATGAACATATGCACTTTTCTTTGTTTCGAACCCTGTATATTAGAATAAACAGAACC
 
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rJMSF048M20+          TGCGGGAT                                                    
rJMSF031P17+          TGCGGGATTAACCTACAGCTATACTNGTATGAGTAAAGTTTACATTTTACAGCTGCGTTT
                      ____________________________________________________________
consensus             TGCGGGATTAACCTACAGCTATACTNGTATGAGTAAAGTTTACATTTTACAGCTGCGTTT
 
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rJMSF031P17+          GCAACCAAAGTNTCCATCTATCATNGGAATCAAATAAAAATGCTAACGTCTAGTCTGTTC
                      ____________________________________________________________
consensus             GCAACCAAAGTNTCCATCTATCATNGGAATCAAATAAAAATGCTAACGTCTAGTCTGTTC