Contig 011351:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020M02Sequence509011351 (9)ref|XP_009606560.1|8e-13PREDICTED: uncharacterized protein in LEU2 3'region [Nicotiana tomentosiformis]716011351 (9)ref|XP_006343032.1|3e-33PREDICTED: uncharacterized protein DDB_G0271670-like [Solanum tuberosum]
JMSF031M15Sequence663011351 (9)ref|XP_009795139.1|126PREDICTED: uncharacterized protein LOC104241880 [Nicotiana sylvestris]690011351 (9)ref|XP_006343032.1|3e-12PREDICTED: uncharacterized protein DDB_G0271670-like [Solanum tuberosum]
JMSF031N21Sequence639011351 (9)ref|XP_009795139.1|140PREDICTED: uncharacterized protein LOC104241880 [Nicotiana sylvestris]620011351 (9)ref|XP_006343032.1|6e-13PREDICTED: uncharacterized protein DDB_G0271670-like [Solanum tuberosum]
JMSF032M15Sequence624011351 (9)ref|XP_006343032.1|4e-15PREDICTED: uncharacterized protein DDB_G0271670-like [Solanum tuberosum]
JMSF038L03Sequence663011351 (9)ref|XP_009795139.1|126PREDICTED: uncharacterized protein LOC104241880 [Nicotiana sylvestris]855011351 (9)ref|XP_006343032.1|8e-26PREDICTED: uncharacterized protein DDB_G0271670-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF031N21-                                                     GTGCATGTTTCATAGTAT
JMSF031M15-                                                     GTGCATGTTTCATAGTAT
JMFF020M02-                                                     GTGCATGTTTCATAGTAT
JMSF038L03-                                                     GTGCATGTTTCATAGTAT
rJMSF038L03+                                                 GACGTGCATGTTTCATAGTAT
                      ____________________________________________________________
consensus                                                    GACGTGCATGTTTCATAGTAT
 
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JMSF031N21-           TTGATAAAGGAAGCTTCTTGATCAGGATCGGAGGACCATACCCGGGCGATTATTATAAGG
JMSF031M15-           TTGATAAAGGAAGCTTCTTGATCAGGATCGGAGGACCATACCCGGGCGATTATTATAAGG
JMFF020M02-           TTGATAAAGGAAGCTTCTTGATCAGGATCGGAGGACCATACCCGGGCGATTATTATAAGG
JMSF038L03-           TTGATAAAGGAAGCTTCTTGATCAGGATCGGAGGACCATACCCGGGCGATTATTATAAGG
rJMSF038L03+          TTGATAAAGGAAGCTTTTTGATCAGGATCGGAGGACCATACCCGGGCGANTATTATAAGG
                      ____________________________________________________________
consensus             TTGATAAAGGAAGCTTCTTGATCAGGATCGGAGGACCATACCCGGGCGATTATTATAAGG
 
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JMSF031N21-           TGGTTGTTACAAAGGTTTCTTCTTAATTAATTTCGCAGTTGGATCAAATCCCAGAAAGCT
JMSF031M15-           TGGTTGTTACAAAGGTTTCTTCTTAATTAATTTCGCAGTTGGATCAAATCCCAGAAAGCT
JMFF020M02-           TGGTTGTTACAAAGGTTTCTTCTTAATTAATTTCGCAGTTGGATCAAATCCCAGAAAGCT
JMSF038L03-           TGGTTGTTACAAAGGTTTCTTCTTAATTAATTTCGCAGTTGGATCAAATCCCAGAAAGCT
rJMFF020M02+                                        TTTCGCAGTGGGATCAAATCCCAGAAAGCT
rJMSF038L03+          TGGTTGTTACAAAGGTNTCTTCTTAATTAATTTCGCAGTTGGATCAAATCCCAGAAAGCT
                      ____________________________________________________________
consensus             TGGTTGTTACAAAGGTTTCTTCTTAATTAATTTCGCAGTTGGATCAAATCCCAGAAAGCT
 
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JMSF031N21-           CAGATCATCTGCAATGGGAGAAGGCAAGACTCAGTTGATTCAAGATCAGTCGTTTCTGTA
JMSF031M15-           CAGATCATCTGCAATGGGAGAAGGCAAGACTCAGTTGATTCAAGATCAGTCGTTTCTGTA
JMFF020M02-           CAGATCATCTGCAATGGGAGAAGGCAAGACTCAGTTGATTCAAGATCAGTGGTTTCTGTA
JMSF038L03-           CAGATCATCTGCAATGGGAGAAGGCAAGACTCAGTTGATTCAAGATCAGTGGTTTCTGTA
rJMFF020M02+          CAGATCATCTGCAATGGGAGAAGGCAAGACTCAGTTGATTCAAGATCAGTGGTTTCTGTA
rJMSF032M15+                                             TGATTCAAGATCANTCGTTTNTGTA
rJMSF038L03+          CAGATCNTCTGCAATGGGAGANGGCANGACTCAGTTGATTCAAGATCAGTGGTTTCTGTA
rJMSF031M15+                                     GACTCAGTTGATTCAAGATCANTCGTTTCTGTA
                      ____________________________________________________________
consensus             CAGATCATCTGCAATGGGAGAAGGCAAGACTCAGTTGATTCAAGATCAGTGGTTTCTGTA
 
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JMSF031N21-           TGGGAATAATAATAATAATAATGGTTTCAAGAATCACCAGGAAGAAGAAGATGATGCATC
JMSF031M15-           TGGGAATAATAATAATAATAATGGTTTCAAGAATCACCAGGAAGAAGAAGATGATGCATC
JMFF020M02-           TGGGAATAATAATAATAATAATGGTTTCAAGAATCACCAGGAAGAAGAAGATGATGCATC
JMSF038L03-           TGGGAATAATAATAATAATAATGGTTTCAAGAATCACCAGGAAGAAGAAGATGATGCATC
rJMFF020M02+          TGGGAATAATAATAATAATAATGGTTTCAAGAATCACCAGGAAGAAGAAGATGATGCATC
rJMSF032M15+          TGGGAATAATAATAATAATAATGGTNTCAAGAATCACCANGAAGAAGAAGATGATGCATC
rJMSF038L03+          TGGGAATAATAATAATAATAATGGTTTCANGAATCACCANGAAGAAGAAGATGATGCATC
rJMSF031M15+          TGGGAATAATAATAATAATAATGGTTTCANGANTCACCANGAAGAAGAAGATGATGCATC
rJMSF031N21+                                                  GAAGAAGAAGANGANGCATC
                      ____________________________________________________________
consensus             TGGGAATAATAATAATAATAATGGTTTCAAGAATCACCAGGAAGAAGAAGATGATGCATC
 
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JMSF031N21-           ATCATCATCCACTTCATCATCATTCATAGGAGAGAATTCCTCATCATTATCATCATCATC
JMSF031M15-           ATCATCATCCACTTCATCATCATTCATAGGAGAGAATTCCTCATCATTATCATCATCATC
JMFF020M02-           ATCATCATCCACTTCATCATCATTCATAGGAGAGAATTCCTCATCATTATCATCATCATC
JMSF038L03-           ATCATCATCCACTTCATCATCATTCATAGGAGAGAATTCCTCATCATTATCATCATCATC
rJMFF020M02+          ATCATCATCCACTTCATCATCATTCATAGGAGAGAATTCCTCATCATTATCATCATCATC
rJMSF032M15+          ATCATCATCCACTTCATCATCANTCATAGGAGAGAGTTCCTCATCATTATCATCATCATC
rJMSF038L03+          ATCATCATCCACTTCATCATCANTCATAGGAGAGANTTCCTCATCATTATCATCATCATC
rJMSF031M15+          ATCATCATCCACTTCATCATCANTCATAGGAGAGAGNTCCTCATCATTATCATCATCATC
rJMSF031N21+          ATCATCATCCACTTCATCATCANTCATAGGAGAGANTTCCTCATCATTATCATCATCATC
                      ____________________________________________________________
consensus             ATCATCATCCACTTCATCATCATTCATAGGAGAGAATTCCTCATCATTATCATCATCATC
 
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JMSF031N21-           ATCATCATCAACAATATGTTCTCTGGACACCACAGATGATGCATCTTCTTCATCTTCACC
JMSF031M15-           ATCATCATCAACAATATGTTCTCTGGACACCACAGATGATGCATCTTCTTCATCTTCACC
JMFF020M02-           ATCATCATCAACAATATGTTCTCTGGACACCACAGATGATGCATCTTCTTCATCTTCACC
JMSF038L03-           ATCATCATCAACAATATGTTCTCTGGACACCACAGATGATGCATCTTCTTCATCTTCACC
rJMFF020M02+          ATCATCATCAACAATATGTTCTCTGGACACCACAGATGATGCATCTTCTTCATCTTCACC
rJMSF032M15+          ATCATCATCAACAATATGTTCTCTGGNCACCACAGAGGATGCATNTTTTTCATCTTCACC
rJMSF038L03+          ATCATCATCAACAATATGTTCTCTGGACACCACAGATGATGCATNTTNTTCATCTTCACC
rJMSF031M15+          ATCATCATCAACAATATGTTCTCTGGACACCACAGATGATGCATNTTNTTCATCTTCACC
rJMSF031N21+          ATCATCATCAACAATATGTTCTCTGGACACCACAGATGATGCATNTTCTTCATCTTCACC
                      ____________________________________________________________
consensus             ATCATCATCAACAATATGTTCTCTGGACACCACAGATGATGCATCTTCTTCATCTTCACC
 
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JMSF031N21-           TCCTTCCTTCAATGGATCCTTGTATGACCTCTCATCTCTCATGTCCCAATTACCCATCAA
JMSF031M15-           TCCTTCCTTCAATGGATCCTTGTATGACCTCTCATCTCTCATGTCCCAATTACCCATCAA
JMFF020M02-           TCCTTCCTTCAATGGATCCTTGTATGACCTCTCATCTCTCATGTCCCAATTACCCATCAA
JMSF038L03-           TCCTTCCTTCAATGGATCCTTGTATGACCTCTCATCTCTCATGTCCCAATTACCCATCAA
rJMFF020M02+          TCCTTCCTTCAATGGATCCTTGTATGACCTCTCATCTCTCATGTCCCAATTACCCATCAA
rJMSF032M15+          TCCNTCCNTCAANGGATCCNTGTATGACCTCTCATCTCTCANGTCCCANTTACCCATCAA
rJMSF038L03+          TCCNTCCTTCAATGGATCCNTGTATGACCTCTCATCTCTCATGTCCCANTTACCCATCAA
rJMSF031M15+          TCCNTCCNTCAANGGATCCNTGTATGACCTCTCNTCTCTCATGTCCCANTTACCCATCAA
rJMSF031N21+          TCCNTCCNTCAATGGATCCNTGTATGACCTCTCATCTCTCATGTCCCANTTACCCATCAA
                      ____________________________________________________________
consensus             TCCTTCCTTCAATGGATCCTTGTATGACCTCTCATCTCTCATGTCCCAATTACCCATCAA
 
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JMSF031N21-           GAGGGGGCTGTCTAAATTCTATAATGGGAAATCAGAATCTTTCACATCTTTGTCAAGGGT
JMSF031M15-           GAGGGGGCTGTCTAAATTCTATAATGGGAAATCAGAATCTTTCACATCTTTGTCAAGGGT
JMFF020M02-           GAGGGGGCTGTCTAAATTCTATAATGGGAAATCAGAATCTTTCACATCTTTGTCAAGGGT
JMSF038L03-           GAGGGGGCTGTCTAAATTCTATAATGGGAAATCAGAATCTTTCACATCTTTGTCAAGGGT
rJMFF020M02+          GAGGGGGCTGTCTAAATTCTATAATGGGAAATCAGAATCTTTCACATCTTTGTCAAGGGT
rJMSF032M15+          GAGGGGGNTGTNTAAATTCTATAATGGGAAATCNGANTCTTTCACATCTTTGTCAAGGGT
rJMSF038L03+          GAGGGGGCTGTNTAAATTCTATAATGGGAAATCAGAATCTTTCACATCTTTGTCAAGGGT
rJMSF031M15+          GAGGGGGCNGTNTAAATTCTATAATGGGAAATCAGAATCTTTCACATCTTTGTCANGGGT
rJMSF031N21+          GAGGGGGCNGTNTAAATTCTATAATGGGAAATCNGAATCTTTCACATCTTTGTCANGGGT
                      ____________________________________________________________
consensus             GAGGGGGCTGTCTAAATTCTATAATGGGAAATCAGAATCTTTCACATCTTTGTCAAGGGT
 
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JMSF031N21-           GAGCAGCATAGAAGAGCTTGCAAAGAAAGAAACACCATTCAAGAGAAAAATGAAGGCTTG
JMSF031M15-           GAGCAGCATAGAAGAGCTTGCAAAGAAAGAAACACCATTCAAGAGAAAAATGAAGGCTTG
JMFF020M02-           GAGCAGCAT                                                   
JMSF038L03-           GAGCAGCATAGAAGAGCTTGCAAAGAAAGAAACACCATTCAAGAGAAAAATGAAGGCTTG
rJMFF020M02+          GAGCAGCATAGAAGAGCTTGCAAAGAAAGAAACACCATTCAAGAGAAAAATGAAGGCTTG
rJMSF032M15+          GAGCAGCATAGAAGAGCNNGCAAAGAAAGANACACCNNTCANGAGAAAAATGAAGGCTNG
rJMSF038L03+          GAGCAGCATAGAAGAGCTTGCAAAGAAAGAAACACCNNTCANGAGAAAAATGAAGGCTTG
rJMSF031M15+          GAGCAGCATAGAAGAGCTTGCAAAGAAAGAAACACCNNTCANGAGAAAAATGAAGGCTNG
rJMSF031N21+          GAGCAGCATAGAAGAGCTNGCAAAGAAAGAAACACCNNTCANGAGAAAAATGAAGGCTNG
                      ____________________________________________________________
consensus             GAGCAGCATAGAAGAGCTTGCAAAGAAAGAAACACCATTCAAGAGAAAAATGAAGGCTTG
 
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JMSF031N21-           CAAGAGCTATGGGGCTGGGTTGGATGCCTACAAATCATACACTTCTCCTAAGCCAATTAT
JMSF031M15-           CAAGAGCTATGGGGCTGGGTTGGATGCCTACAAATCATACACTTCTCCTAAGCCAATTAT
JMSF038L03-           CAAGAGCTATGGGGCTGGGTTGGATGCCTACAAATCATACACTTCTCCTAAGCCAATTAT
rJMFF020M02+          CAAGAGCTATGGGGCTGGGTTGGATGCCTACAAATCATACACTTCTCCTAAGCCAATTAT
rJMSF032M15+          CANGAGCTATGGGGNTGGGTNGGATGCCTACAAATCATACACTTCTCTTAAGCCANTTAT
rJMSF038L03+          CANGAGCTATGGGGCTGGGTTGGATGCCTACAAATCATACACTTCTCTTAAGCCANTTAT
rJMSF031M15+          CANGAGCTATGGGGNTGGGTNGGATGCCTACAAATCATACACTTCTCTTAAGCCANTTAT
rJMSF031N21+          CANGAGCTATGGGGNTGGGTNGGATGCCTACAAATCATACACTTCTCTTAAGCCANTTAT
                      ____________________________________________________________
consensus             CAAGAGCTATGGGGCTGGGTTGGATGCCTACAAATCATACACTTCTCCTAAGCCAATTAT
 
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JMSF031N21-           CACAAAGAAACCCTCATC                                          
JMSF031M15-           CACAAAGAAACCCTCATCCAAGATCTCATTTTCATCTTCTCA                  
JMSF038L03-           CACAAAGAAACCCTCATCCAAGATCTCATTTTCATCTTCTCA                  
rJMFF020M02+          CACAAAGAAACCCTCATCCAAGATCTCATTTTCATCTTCTCAAACTAGAAGAGGGAGCTT
rJMSF032M15+          CNCANAGAAACCCTCNTCCANGATCTCNTTTTCNTCTTCTCANACTAGAAGAGGGAGNTT
rJMSF038L03+          CACAAAGAAACCCTCNTCCANGATCTCNTTTTCATCTTCTCNAACTAGAAGAGGGAGCTT
rJMSF031M15+          CNCAAAGAAACCCTCNTCCANGATCTCNTTTTCATCTTCTCAAACTAGAAGAGGGAGCTT
rJMSF031N21+          CNCAAAGAAACCCTCNTCCANGATCTCNTTTTCATCTTCTCAAACTAGAAGAGGGAGCTT
                      ____________________________________________________________
consensus             CACAAAGAAACCCTCATCCAAGATCTCATTTTCATCTTCTCAAACTAGAAGAGGGAGCTT
 
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rJMFF020M02+          CACCAGCAGGAGCACTAGACCCCCTCTCATTCCTGTGCAGGAGAACCACCTAGGATGCTA
rJMSF032M15+          CNCCNGCANGAGCNCTAGACCCCCTCCCANTCNTGTGCAGGAGANCCNCCTAGGANGCTA
rJMSF038L03+          CACCAGCAGGAGCNCTAGACCCCCTCTCNNTCCTGTGCAGGAGANCCACCTAGGATGCTA
rJMSF031M15+          CACCNGCNGGAGCNCTAGACCCCCTCCCANTCCTGTGCNGGAGANCCACCTAGGATGCTA
rJMSF031N21+          CNCCNGCAGGAGCNCTAGACCCCCTCCCANTCCTGTGCNGGAGANCCACCTAGGATGCTA
                      ____________________________________________________________
consensus             CACCAGCAGGAGCACTAGACCCCCTCCCATTCCTGTGCAGGAGAACCACCTAGGATGCTA
 
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rJMFF020M02+          AACTTTGTTGTTCTTCATAGAGAGAGA                                 
rJMSF032M15+          AACTNTGTTGTTCTTCATAGAGAGAGAAACANGGGTNTTATTCATTTTCT          
rJMSF038L03+          AACTTTGCTGTTCTTCATAGAGAGAGAAACANGGGTCTTATTAATTTTCTTACATATAGT
rJMSF031M15+          AACTTTGTTGTTNTTCATAGAGAGAGAAACANGGGTCTTATTAATTTTCTTACANATAGT
rJMSF031N21+          AACTTTGTTGTTNTTCATAGAGAGAGAAACANGGGTNTTATTAATTTTCTTACANATAGT
                      ____________________________________________________________
consensus             AACTTTGTTGTTCTTCATAGAGAGAGAAACANGGGTCTTATTAATTTTCTTACATATAGT
 
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rJMSF038L03+          GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTTTATAGTTATTGAATTT      
rJMSF031M15+          GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTTTATAGTTATTGAATTT      
rJMSF031N21+          GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTTTATAGTTATTGAATTTTGTTAC
                      ____________________________________________________________
consensus             GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTTTATAGTTATTGAATTTTGTTAC