| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF021G12 | Sequence | 697 | 011349 (6) | ref|XP_009594055.1| | 1e-48 | PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Nico | 777 | 011349 (6) | ref|XP_002302737.1| | 9e-104 | mitochondrial substrate carrier family protein [Populus trichocarpa] gb|EEE82010 |
| JMSF021I05 | Sequence | 671 | 011349 (6) | ref|XP_009594055.1| | 9e-75 | PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Nico | 772 | 011349 (6) | ref|XP_011007801.1| | 2e-105 | PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic-like |
| JMSF031E13 | Sequence | 694 | 011349 (6) | ref|XP_002273574.1| | 4e-54 | PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Viti | 768 | 011349 (6) | ref|XP_011007801.1| | 1e-75 | PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic-like |
This contig is upended
. : . : . : . : . : . :
JMSF021G12- GATCGTCT
____________________________________________________________
consensus GATCGTCT
. : . : . : . : . : . :
JMSF021G12- GGTGGAGAGTAGTTCAATGGTCGACAATAATTTTCTTCCTTCGATCCAAAACCTACCCTC
____________________________________________________________
consensus GGTGGAGAGTAGTTCAATGGTCGACAATAATTTTCTTCCTTCGATCCAAAACCTACCCTC
. : . : . : . : . : . :
JMSF021G12- CCAGATCAGATGAGGATTAGTGTGAGATCGCTTTCCTGTTTGTGATTCTCGATCGCATCG
JMSF031E13- AGTGTGAGATCGCTTTCCTGTTTGTGATTCTCGATCGCATCG
____________________________________________________________
consensus CCAGATCAGATGAGGATTAGTGTGAGATCGCTTTCCTGTTTGTGATTCTCGATCGCATCG
. : . : . : . : . : . :
JMSF021G12- AACTCCCAACAACGCAGGCATTATAATTCTTCAGGTTGTTGCGGGGAGGAAGACGATAAA
JMSF031E13- AACTCCCAACAACGCAGGCATTATAATTCTTCAGGTTGTTGCGGGGAGGAAGACGATAAA
____________________________________________________________
consensus AACTCCCAACAACGCAGGCATTATAATTCTTCAGGTTGTTGCGGGGAGGAAGACGATAAA
. : . : . : . : . : . :
JMSF021G12- AAGGCCAGTCATAGAGGAGATATATAGGTTTGCTCCTTCGAATTGCTCGTTCCGAGCTCT
JMSF031E13- AAGGCCAGTCATAGAGGAGATATATAGGTTTGCTCCTTCGAATTGCTCGTTCCGAGCTCT
JMSF021I05- AGGTTTGCTCCTTCGAATTGCTCGTTCCGAGCTCT
____________________________________________________________
consensus AAGGCCAGTCATAGAGGAGATATATAGGTTTGCTCCTTCGAATTGCTCGTTCCGAGCTCT
. : . : . : . : . : . :
JMSF021G12- ACCGACTGGCCATGCGACGCTGGTTGTCAGCTATTGGCCTCTCCAGAGAGGACTTCTCCA
JMSF031E13- ACCGACTGGCCATGCGACGCTGGTTGTCAGCTATTGGCCTCTCCAGAGAGGACTTCTCCA
JMSF021I05- ACCGACTGGCCATGCGACGCTGGTTGTCAGCTATTGGCCTCTCCAGAGAGGACTTCTCCA
____________________________________________________________
consensus ACCGACTGGCCATGCGACGCTGGTTGTCAGCTATTGGCCTCTCCAGAGAGGACTTCTCCA
. : . : . : . : . : . :
JMSF021G12- ATAAACAGATTGTTCCCGCCGTTGACGTTGTTGCCGCAGCATCATCTCACGCAGCCCTCT
JMSF031E13- ATAAACAGATTGTTCCCGCCGTTGACGTTGTTGCCGCAGCATCATCTCACGCAGCCCTCT
JMSF021I05- ATAAACAGATTGTTCCCGCCGTTGACGTTGTTGCCGCAGCATCATCTCACGCAGCCCTCT
____________________________________________________________
consensus ATAAACAGATTGTTCCCGCCGTTGACGTTGTTGCCGCAGCATCATCTCACGCAGCCCTCT
. : . : . : . : . : . :
JMSF021G12- TTCGATTCGATCGCCGTAGATTTAGCAATGACTGCCGATGCTCATGGCCCTAGCCCTAAA
JMSF031E13- TTCGATTCGATCGCCGTAGATTTAGCAATGACTGCCGATGCTCATGGCCCTAGCCCTAAA
JMSF021I05- TTCGATTCGATCGCCGTAGATTTAGCAATGACTGCCGATGCTCATGGCCCTAGCCCTAAA
____________________________________________________________
consensus TTCGATTCGATCGCCGTAGATTTAGCAATGACTGCCGATGCTCATGGCCCTAGCCCTAAA
. : . : . : . : . : . :
JMSF021G12- GGCCTCCTCTGCAATGCCGGCGCAGGCGCCGCTGCCGGAGTAATTGCAGCTACTTTTGTG
JMSF031E13- GGCCTCCTCTGCAATGCCGGCGCAGGCGCCGCTGCCGGAGTAATTGCAGCTACTTTTGTG
JMSF021I05- GGCCTCCTCTGCAATGCCGGCGCAGGCGCCGCTGCCGGAGTAATTGCAGCTACTTTTGTG
____________________________________________________________
consensus GGCCTCCTCTGCAATGCCGGCGCAGGCGCCGCTGCCGGAGTAATTGCAGCTACTTTTGTG
. : . : . : . : . : . :
JMSF021G12- TGTCCTTTAGATGTTATAAAGACAAGATTTCAGGTTCATGGGCTTCCAAAGCTTGGTAAT
JMSF031E13- TGTCCTTTAGATGTTATAAAGACAAGATTTCAGGTTCATGGGCTTCCAAAGCTTGGTAAT
JMSF021I05- TGTCCTTTAGATGTTATAAAGACAAGATTTCAGGTTCATGGGCTTCCAAAGCTTGGTAAT
____________________________________________________________
consensus TGTCCTTTAGATGTTATAAAGACAAGATTTCAGGTTCATGGGCTTCCAAAGCTTGGTAAT
. : . : . : . : . : . :
JMSF021G12- ACTAACATTAGAGGCAGTCTTATAGTTGGTAGCTTAGAGCAGATATTCCAGAGGGAGGGG
JMSF031E13- ACTAACATTAGAGGCAGTCTTATAGTTGGTAGCTTAGAGCAGATATTCCAGAGGGAGGGG
JMSF021I05- ACTAACATTAGAGGCAGTCTTATAGTTGGTAGCTTAGAGCAGATATTCCAGAGGGAGGGG
____________________________________________________________
consensus ACTAACATTAGAGGCAGTCTTATAGTTGGTAGCTTAGAGCAGATATTCCAGAGGGAGGGG
. : . : . : . : . : . :
JMSF021G12- TTGCGGGGGATGTACCGTGGGCTTTCTCCAACAGTTCTGGCATTACTTCCAAACTGGGCG
JMSF031E13- TTGCGGGGGATGTACCGTGGGCTTTCTCCAACAGTTCTGGCATTACTTCCAAACTGGGCG
JMSF021I05- TTGCGGGGGATGTACCGTGGGCTTTCTCCAACAGTTCTGGCATTACTTCCAAACTGGGCG
____________________________________________________________
consensus TTGCGGGGGATGTACCGTGGGCTTTCTCCAACAGTTCTGGCATTACTTCCAAACTGGGCG
. : . : . : . : . : . :
JMSF021G12- GTTTATTTTACTATTTATGAGCAGCTGAA
JMSF031E13- GTTTATTTTACTATTTATGAGCAGCTGAAATCTTTTCTTTGCTCTGATGATG-AAGACAT
JMSF021I05- GTTTATTTTACTATTTATGAGCAGCTGAAATCTTTTCTTTGCTCTGATGATGAAAGACAT
____________________________________________________________
consensus GTTTATTTTACTATTTATGAGCAGCTGAAATCTTTTCTTTGCTCTGATGATGAAAGACAT
. : . : . : . : . : . :
JMSF031E13- GAACTTTCTATTGGTGCCAACATGCTTGCTGCTGCTGGTGCTGGGGCTGCAA
JMSF021I05- GAACTTTCTATTGGTGCCAACATGCTTGCTGCTGCTGGTGCTGGGGCTGCAACAACAATT
rJMSF021G12+ TGGTGCCAACATGCTTGCTGCTGCTGGNGCTGGGGCTGCAACAACAATG
____________________________________________________________
consensus GAACTTTCTATTGGTGCCAACATGCTTGCTGCTGCTGGTGCTGGGGCTGCAACAACAATT
. : . : . : . : . : . :
JMSF021I05- GCCACAAATCCTCTTTGGGTTGTGAAGACTAGACTTCAGACTCAAGGAATGAGAGCTGGT
rJMSF021G12+ GCCACAAATCCTCTNTGGGTTGTGAAGACTAGACTTCAGACTCAAGGAATGAGAGCTGGT
____________________________________________________________
consensus GCCACAAATCCTCTTTGGGTTGTGAAGACTAGACTTCAGACTCAAGGAATGAGAGCTGGT
. : . : . : . : . : . :
JMSF021I05- TTTGT
rJMSF021G12+ TTTGTGCCATATAGGGGTACATTATCGGCTCTAAGAAGAATAGCTCGTGAAGAGGGCATT
____________________________________________________________
consensus TTTGTGCCATATAGGGGTACATTATCGGCTCTAAGAAGAATAGCTCGTGAAGAGGGCATT
. : . : . : . : . : . :
rJMSF021G12+ CGTGGGCTGTATAGTGGTCTTGTGCCTGCTCTGGCGGGTGTTAGTCATGNTGCTATCCAG
rJMSF021I05+ AGTGGTCTTGTGCCTGCTCTGGCGGGTGTTAGTCATGTTGCTATCCAG
rJMSF031E13+ AGTGGTCTTGTGCCTGCTCTGGCGGGTGTTAGTCATGTTGCTATCCAG
____________________________________________________________
consensus CGTGGGCTGTATAGTGGTCTTGTGCCTGCTCTGGCGGGTGTTAGTCATGTTGCTATCCAG
. : . : . : . : . : . :
rJMSF021G12+ TTTCCAACATATGAGAAGATCAAGATATATTTGGNTAATCGGGATAACACTAGTATGGAC
rJMSF021I05+ TTTCCAACATATGAGAAGATCAAGATATATTTGGCTAATCGGGATAACACTAGTATGGAC
rJMSF031E13+ TTTCCAACATATGAGAAGATCAAGATATATTTGGCTAATCGGGATAACACTAGTATGGAC
____________________________________________________________
consensus TTTCCAACATATGAGAAGATCAAGATATATTTGGCTAATCGGGATAACACTAGTATGGAC
. : . : . : . : . : . :
rJMSF021G12+ AAACTCAGTGCCAGCAATGTCGCTGTTGCATCATCAGTTTCAAAAATATTTGCTTCTACA
rJMSF021I05+ AAACTCAGTGCCAGCAATGTCGCTGTTGCATCATCAGTTTCAAAAATATTTGCTTCTACA
rJMSF031E13+ AAACTCAGTGCCAGCAATGTCGCTGTTGCATCATCAGTTTCAAAAATATTTGCTTCTACA
____________________________________________________________
consensus AAACTCAGTGCCAGCAATGTCGCTGTTGCATCATCAGTTTCAAAAATATTTGCTTCTACA
. : . : . : . : . : . :
rJMSF021G12+ ATGACATATCCACATGAGGTTGTGCGGTCAAGGCTTCAAGAACAGGGCCTACACTCGGAG
rJMSF021I05+ ATGACATATCCACATGAGGTTGTGCGGTCAAGGCTTCAAGAACAGGGCCTACACTCGGAG
rJMSF031E13+ ATGACATATCCACATGAGGTTGTGCGGTCAAGGCTTCAAGAACAGGGCCTACACTCGGAG
____________________________________________________________
consensus ATGACATATCCACATGAGGTTGTGCGGTCAAGGCTTCAAGAACAGGGCCTACACTCGGAG
. : . : . : . : . : . :
rJMSF021G12+ AAACGCTATAGTGGTGTGATTGACTGCGTTAGGAAAGTTTTCCAGCAAGAAGGCATCCCT
rJMSF021I05+ AAACGCTATAGTGGTGTGATTGACTGCGTTAGGAAAGTTTTCCAGCAAGAAGGCATCCCT
rJMSF031E13+ AAACGCTATAGTGGTGTGATTGACTGCGTTAGGAAAGTTTTCCAGCAAGAAGGCATCCCT
____________________________________________________________
consensus AAACGCTATAGTGGTGTGATTGACTGCGTTAGGAAAGTTTTCCAGCAAGAAGGCATCCCT
. : . : . : . : . : . :
rJMSF021G12+ GGTTTTTATCGAGGTTGTGCTACCAATTTAATCCGGACCACACCAGCAGCTGTAATTACC
rJMSF021I05+ GGTTTTTATCGAGGTTGTGCTACCAATTTAATCCGGACCACACCAGCAGCTGTAATTACC
rJMSF031E13+ GGTTTTTATCGAGGTTGTGCTACCAATTTAATCCGGACCACACCAGCAGCTGTAATTACC
____________________________________________________________
consensus GGTTTTTATCGAGGTTGTGCTACCAATTTAATCCGGACCACACCAGCAGCTGTAATTACC
. : . : . : . : . : . :
rJMSF021G12+ TTCACCAGTTTTGAGATGATACACCGTTTTCTAGTTTCAGTGTTCCCCCCTGATCCTCAG
rJMSF021I05+ TTCACCAGTTTTGAGATGATACACCGTTTTCTAGTTTCAGTGTTCCCCCCTGATCCTCAG
rJMSF031E13+ TTCACCAGTTTTGAGATGATACACCGTTTTCTAGTTTCAGTGTTCCCCCCTGATCCTCAG
____________________________________________________________
consensus TTCACCAGTTTTGAGATGATACACCGTTTTCTAGTTTCAGTGTTCCCCCCTGATCCTCAG
. : . : . : . : . : . :
rJMSF021G12+ CCACAACCACTGTGAGGATCAATATCATCGNGCATTGGAAATTATTATGGANTGAGTTAG
rJMSF021I05+ CCACAACCACTGTGAGGATCAATATCATCGTGCATTGGAAATTATTATGGATTGAGTTAG
rJMSF031E13+ CCACAACCACTGTGAGGATCAATATCATCGTGCATTGGAAATTATTATGGATTGAGTTAG
____________________________________________________________
consensus CCACAACCACTGTGAGGATCAATATCATCGTGCATTGGAAATTATTATGGATTGAGTTAG
. : . : . : . : . : . :
rJMSF021G12+ TNGGCTAGAACAGAATGTGGCCTTCCGCATAGGTTGTCANGGGTAAATTATAGAATCGCA
rJMSF021I05+ TTGGCTAGAACAGAATGTGGCCTTCCGCATAGGTTGTCATGGGTAAATTATAGAATCGCA
rJMSF031E13+ TTGGCTAGAACAGAATGTGGCCTTCCGCATAGGTTGTCATGGGTAAATTATAGAATCGCA
____________________________________________________________
consensus TTGGCTAGAACAGAATGTGGCCTTCCGCATAGGTTGTCATGGGTAAATTATAGAATCGCA
. : . : . : . : . : . :
rJMSF021G12+ AGATTGCAATTGCGTTAGGACACTGTAACAAACCGCCGCCTATACTGAAATGATAATGAT
rJMSF021I05+ AGATTGCAATTGCGTTAGGACACTGTAACAAACCGCCGCCTATACTGAAATGATAATGAT
rJMSF031E13+ AGATTGCAATTGCGTTAGGACACTGTAACAAACCGCCGCCTATACTGAAATGATAATGAT
____________________________________________________________
consensus AGATTGCAATTGCGTTAGGACACTGTAACAAACCGCCGCCTATACTGAAATGATAATGAT
. : . : . : . : . : . :
rJMSF021G12+ GAAAAAAG
rJMSF021I05+ GAAAAAAGTGTTTAAGATGCTATAGACAAATTAAACTACATTTTG
rJMSF031E13+ GAAAAAAGTGTTTAAGATGCTATAGACAAATTAAACTACATTTTGGTTTTGAAGAATGTG
____________________________________________________________
consensus GAAAAAAGTGTTTAAGATGCTATAGACAAATTAAACTACATTTTGGTTTTGAAGAATGTG