Contig 011348:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004O17Sequence194011348 (6)gb|AAM48290.1|1e-08homeodomain protein Hfi22 [Nicotiana tabacum]
JMFF014C16Sequence327011348 (6)
JMFF033P04Sequence477011348 (6)emb|CDP01514.1|1e-07unnamed protein product [Coffea canephora]
JMFN025M01Sequence548011348 (6)
JMSF019O19Sequence703011348 (6)ref|XP_009588928.1|4e-16PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform
JMSF030M09Sequence689011348 (6)ref|XP_009588928.1|5e-14PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform

Alignment

This contig is upended


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rJMSF019O19+           CGCCGCCATCAATCAACTGCTACCAATTCTCGGAGAATCCGAAGACGGCGGCTGCCTTT
rJMSF030M09+                                         CGGAGAATCCGAAGACGGCGGCCGCCTTT
                      ____________________________________________________________
consensus              CGCCGCCATCAATCAACTGCTACCAATTCTCGGAGAATCCGAAGACGGCGGCTGCCTTT
 
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rJMFF033P04+                                                 CCGCAGATGGTGAAGATCGAG
rJMFF004O17+                                                 CCGCAGATGGTGAAGATCGAG
rJMSF019O19+          CTCGGCGATGTTTGTGGGAAGGCGGCGGCGGCGTATCAGCCGCAGATGGTGAAGATCGAG
rJMSF030M09+          CTCGGCGATGTTTGTGGGAAGGCGGCGGCGGCGTATCAGCCGCAGATGGTGAAGATCGAG
                      ____________________________________________________________
consensus             CTCGGCGATGTTTGTGGGAAGGCGGCGGCGGCGTATCAGCCGCAGATGGTGAAGATCGAG
 
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rJMFF033P04+          GAGCATAATTTTTTNGGAGGCGAAGACTCATGCAGTAGTCTGTTNTCAGACGAGCAAGCT
rJMFF004O17+          GAGCATAATTTTTTCGGAGGCGAAGACTCATGCAGTAGTCTGTTNTCAGACGAGCAAGCT
rJMSF019O19+          GAGCATAATTTTTTCGGAGGCGAAGACTCATGCAGTAGTCTGTTCTCAGACGAGCAAGCT
JMFN025M01-                                                        TCAGACGAGCAAGCT
rJMSF030M09+          GAGCATAATTTTTTCGGAGGCGAAGACTCATGCAGTAGTCTGTTCTCAGACGAGCAAGCT
                      ____________________________________________________________
consensus             GAGCATAATTTTTTCGGAGGCGAAGACTCATGCAGTAGTCTGTTCTCAGACGAGCAAGCT
 
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rJMFF033P04+          CCCATNCTCCATTGGTACTCACCGGAAGTAGTCTGGAATTGCACCTCATGATCATCANTA
rJMFF004O17+          CCCATNCTCCANTGGTACTCACCGGAAGTAGNCTGGAATTGCACCTCATGATCATCANTA
rJMSF019O19+          CCCATACTCCATTGGTACTCACCGGAAGTAGACTGGAATTGCACCTCATGATCATCATTA
JMFN025M01-           CCCATACTCCATTGGTACTCACCGGAAGTAGACTGGAATTGCACCTCATGATCATCATTA
rJMSF030M09+          CCCATACTCCATTGGTACTCACCGGAAGTAGACTGGAATTGCACCTCATGATCATCATTA
                      ____________________________________________________________
consensus             CCCATACTCCATTGGTACTCACCGGAAGTAGACTGGAATTGCACCTCATGATCATCATTA
 
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rJMFF033P04+          AGATCCCAGAANGAAGAAATANGAGNTCGAAACACAAATTAAATTTGTAAAAAATGAAAA
rJMFF004O17+          AGATCCCAGAANGAAGAAATANGAGATCGAAAAACAAATTAAATTTGTAAAA        
rJMSF019O19+          AGATCCCAGAAAGAAGAAATAAGAGATCGAAAAACAAATTAAATTTGTAAAAAATGAAAA
JMFN025M01-           AGATCCCAGAAAGAAGAAATAAGAGATCGAAAAACAAATTAAATTTGTAAAAAATGAAAA
rJMSF030M09+          AGATCCCAGAAAGAAGAAATAAGAGATCGAAAAACAAATTAAATTTGTAAAAAATGAAAA
                      ____________________________________________________________
consensus             AGATCCCAGAAAGAAGAAATAAGAGATCGAAAAACAAATTAAATTTGTAAAAAATGAAAA
 
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rJMFF033P04+          ATTNATCATGTGAATTATGGTGGGNGTATNGTAGAAACGAAACGAAATGAAGCTGTNTTG
rJMSF019O19+          ATTAATCATGTGAATTATGGTGGGTGTATTGTAGAAACGAAACGAAACGAAGCTGTCTTG
JMFN025M01-           ATTAATCATGTGAATTATGGTGGGTGTATTGTAGAAACGAAACGAAACGAAGCTGTCTTG
rJMSF030M09+          ATTAATCATGTGAATTATGGTGGGTGTATTGTAGAAACGAAACGAAACGAAGCTGTCTTG
                      ____________________________________________________________
consensus             ATTAATCATGTGAATTATGGTGGGTGTATTGTAGAAACGAAACGAAACGAAGCTGTCTTG
 
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rJMFF033P04+          GTTNTTGAATTCAAAAATCATAATCATNGGTAAAGCCAAGAATGAAGATGGAAGNTTGAN
rJMSF019O19+          GTTCTTGAATTCAAAAATCATAATCATAGGTAAAGCCAAGAATGAAGATTGAAGATTGAA
rJMFF014C16+               TGAATTCAAAAATCATAATCATAGGTAAANCCAAGAATGAAGATTGAAGATTGAA
JMFN025M01-           GTTCTTGAATTCAAAAATCATAATCATAGGTAAAGCCAAGAATGAAGATTGAAGATTGAA
rJMSF030M09+          GTTCTTGAATTCAAAAATCATAATCATAGGTAAAGCCAAGAATGAAGATTGAAGATTGAA
                      ____________________________________________________________
consensus             GTTCTTGAATTCAAAAATCATAATCATAGGTAAAGCCAAGAATGAAGATTGAAGATTGAA
 
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rJMFF033P04+          GAAGATGACAGAAATGGCAGGGGGAGTTCNCGTGGGGNGTAGGGGTGAGNGNGCCAGGAT
rJMSF019O19+          GAAGATGACAGAAATGGCAGGGGGAGTTCACGTGGGGCGTAGGGGTGAGTGGGCCAGGAT
rJMFF014C16+          GAAGATGNCAGAAATGGCAGGGGGAGTTCACGTGGGGCGTAGGGGTGAGTGGNCCAGGAT
JMFN025M01-           GAAGATGACAGAAATGGCAGGGGGAGTTCACGTGGGGCGTAGGGGTGAGTGGGCCAGGAT
rJMSF030M09+          GAAGATGACAGAAATGGCAGGGGGAGTTCACGTGGGGCGTAGGGGTGAGTGGGCCAGGAT
                      ____________________________________________________________
consensus             GAAGATGACAGAAATGGCAGGGGGAGTTCACGTGGGGCGTAGGGGTGAGTGGGCCAGGAT
 
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rJMFF033P04+          GATGGGGGGAAGANAAGTAGGNTGGATCATGGCTGGGCANNGCAGANNNGCAGGNAAGGA
rJMSF019O19+          GATGGGGGGAAGAAAAGTAGGATGGATCATGGATGGGCATTGCAGATTTGCAGGCAAGGA
rJMFF014C16+          GATGGGGGGAAGAAAAGTAGGATGGATCATGGATGGGCATTGCAGATTTGCAGGCAAGGA
JMFN025M01-           GATGGGGGGAAGAAAAGTAGGATGGATCATGGATGGGCATTGCAGATTTGCAGGCAAGGA
rJMSF030M09+          GATGGGGGGAAGAAAAGTAGGATGGATCATGGATGGGCATTGCAGATTTGCAGGCAAGGA
                      ____________________________________________________________
consensus             GATGGGGGGAAGAAAAGTAGGATGGATCATGGATGGGCATTGCAGATTTGCAGGCAAGGA
 
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rJMFF033P04+          GGGAGGAGATGATGATTAGNTNGTCATNTGAAT                           
rJMSF019O19+          GGGAGGAGATGATGATTAGATCGTCATTTGAATCTCTTTTATCTTTTCACCCTCCAAACA
rJMFF014C16+          GGGAGGAGATGATGATTAGATNGTCATTTGAATCTCTTTTATCTTTTCACCCTCCAAACA
JMFN025M01-           GGGAGGAGATGATGATTAGATCGTCATTTGAATCTCTTTTATCTTTTCACCCTCCAAACA
rJMSF030M09+          GGGAGGAGATGATGATTAGATCGTCATTTGAATCTCTTTTATCTTTTCNCCCTCCAAACA
                      ____________________________________________________________
consensus             GGGAGGAGATGATGATTAGATCGTCATTTGAATCTCTTTTATCTTTTCACCCTCCAAACA
 
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rJMSF019O19+          GAAGAAACAAAGAAATCATCCCAAATTATCAAAGCTTTCCTGTAATAATGCTTATAAAGG
rJMFF014C16+          GAAGAAACAAAGAAATCATCCCAAATTATCAAAGCTTTCCTGTAATAATGCTTATAAAGG
JMFN025M01-           GAAGAAACAAAGAAATCATCCCAAATTATCAAAGCTTTCCTGTAATAATGCTTATAAAGG
rJMSF030M09+          GAAGAAACAAAGAAATCATCCCAAATTATCAAAGCTTTCCTGTAATAATGCTTATAAAGG
                      ____________________________________________________________
consensus             GAAGAAACAAAGAAATCATCCCAAATTATCAAAGCTTTCCTGTAATAATGCTTATAAAGG
 
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rJMSF019O19+          TGGATCGTCTACACCCATGCATCCAATAATTACACCATCGTTTT                
rJMFF014C16+          TGGATCGTATACACCCATGCATCCAATAA                               
JMFN025M01-           TGGATCGTCTACACCCATGCATCCAATAATTACACCATCGTTTT                
rJMSF030M09+          TGGATCGTCTACACCCATGCATCCAATAATTACACCATCGTTTTTTTACTAATTTCATCT
                      ____________________________________________________________
consensus             TGGATCGTCTACACCCATGCATCCAATAATTACACCATCGTTTTTTTACTAATTTCATCT