| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009I18 | Sequence | 549 | 010615 (2) | ref|XP_006340028.1| | 4e-97 | PREDICTED: calcium-dependent protein kinase SK5-like [Solanum tuberosum] | 745 | 011347 (3) | ref|XP_002518007.1| | 3e-61 | calcium-dependent protein kinase, putative [Ricinus communis] gb|EEF44525.1| cal |
| JMSF011F22 | Sequence | 393 | 010615 (2) | ref|XP_006340028.1| | 4e-22 | PREDICTED: calcium-dependent protein kinase SK5-like [Solanum tuberosum] | 264 | 011347 (3) | emb|CDP19676.1| | 7e-15 | unnamed protein product [Coffea canephora] |
| JMSF030G23 | Sequence | 554 | 012043 (2) | ref|XP_009794100.1| | 155 | PREDICTED: uncharacterized protein LOC104240898 [Nicotiana sylvestris] ref|XP_00 | 695 | 011347 (3) | gb|KJB13573.1| | 1e-53 | hypothetical protein B456_002G082100 [Gossypium raimondii] |
This contig is upended
. : . : . : . : . : . :
rJMFF009I18+ ATAGACTATGG
____________________________________________________________
consensus ATAGACTATGG
. : . : . : . : . : . :
rJMFF009I18+ AGAGTTTCTTGCTGCTACTGTACACTTGAACAAGTTGGAAAGAGAAGAAAACCTAGTATC
____________________________________________________________
consensus AGAGTTTCTTGCTGCTACTGTACACTTGAACAAGTTGGAAAGAGAAGAAAACCTAGTATC
. : . : . : . : . : . :
rJMFF009I18+ GGCGTTCTCTTTCTTTGACAAAGATGGTAGTGGTTACATAACCATTGATGAACTTCAGCA
____________________________________________________________
consensus GGCGTTCTCTTTCTTTGACAAAGATGGTAGTGGTTACATAACCATTGATGAACTTCAGCA
. : . : . : . : . : . :
rJMFF009I18+ AGCCTGCAAACAATTTGGTCTAAGCGAGCTTAATCTTGATGAAATGATCAAAGAAATCGA
____________________________________________________________
consensus AGCCTGCAAACAATTTGGTCTAAGCGAGCTTAATCTTGATGAAATGATCAAAGAAATCGA
. : . : . : . : . : . :
rJMSF011F22+ GATGGACAGATTGACTATGGGGAATTTGCAGCAATGATGAGGAAAGGCAA
rJMFF009I18+ TCAAGATAACGATGGACAGATTGACTATGGGGAATTTGCAGCAATGATGAGGAAAGGCAA
____________________________________________________________
consensus TCAAGATAACGATGGACAGATTGACTATGGGGAATTTGCAGCAATGATGAGGAAAGGCAA
. : . : . : . : . : . :
rJMSF011F22+ TGGAGGCATTGGAAGGAGAACCATGAGAAATACTTTAAATTTGGGAGAAGCCCTAGGACT
rJMFF009I18+ TGGAGGCATTGGAAGGAGAACCATGAGAAATACTTTAAATTTGGGAGAAGCCCTAGGACT
____________________________________________________________
consensus TGGAGGCATTGGAAGGAGAACCATGAGAAATACTTTAAATTTGGGAGAAGCCCTAGGACT
. : . : . : . : . : . :
rJMSF011F22+ ACT
rJMFF009I18+ ACTTGTAGAGGGTAAAGAATAAAGATAGCCTTTGATGCACTAATCTAAATGAATTTTGGT
____________________________________________________________
consensus ACTTGTAGAGGGTAAAGAATAAAGATAGCCTTTGATGCACTAATCTAAATGAATTTTGGT
. : . : . : . : . : . :
rJMFF009I18+ TCATCCTTCCTAATTTCAACCATAATGATACTTGCTGCAACTATAAGGCCTCACATTCCT
____________________________________________________________
consensus TCATCCTTCCTAATTTCAACCATAATGATACTTGCTGCAACTATAAGGCCTCACATTCCT
. : . : . : . : . : . :
rJMFF009I18+ TGTCACTAATTGCTCTCATCTCCCCTATATTCATTCATGATTGCATTTTCCCGCCTCAAC
____________________________________________________________
consensus TGTCACTAATTGCTCTCATCTCCCCTATATTCATTCATGATTGCATTTTCCCGCCTCAAC
. : . : . : . : . : . :
rJMFF009I18+ TGGTCATAGAGGTGAAAGTTAGAAAGAATGATCAGGGATCGAGTCTCACCAGCGACAGTG
rJMSF030G23+ GGGATCGAGTCTCATCAGCAGCAGTG
____________________________________________________________
consensus TGGTCATAGAGGTGAAAGTTAGAAAGAATGATCAGGGATCGAGTCTCATCAGCGGCAGTG
. : . : . : . : . : . :
rJMFF009I18+ TGGGAGTAACCTCTCAAAGTGAGGGGGGCTCCTTGTGTGCAATAAGCAAAGGTCTAG
rJMSF030G23+ TGGGAGCAACCTCTCAAACTGAGGGGGGCTCCTTGTGCGCAGTAAGCAAAGGTCTAGCCT
____________________________________________________________
consensus TGGGAGTAACCTCTCAAAGTGAGGGGGGCTCCTTGTGTGCAGTAAGCAAAGGTCTAGCCT
. : . : . : . : . : . :
rJMSF030G23+ CTGTGTTCAGATGAGTTACCATGATTTACATCCTCCCAGATGCTCTGCCGGGCCGGGACG
____________________________________________________________
consensus CTGTGTTCAGATGAGTTACCATGATTTACATCCTCCCAGATGCTCTGCCGGGCCGGGACG
. : . : . : . : . : . :
rJMSF030G23+ TGGGAGGTCTTTGGGGTTGGGGATTCAACCTTTTGGGAACAAAAATGTGGCGGTATAAGA
____________________________________________________________
consensus TGGGAGGTCTTTGGGGTTGGGGATTCAACCTTTTGGGAACAAAAATGTGGCGGTATAAGA
. : . : . : . : . : . :
rJMSF030G23+ AAATAAAGTTGCGCCTTCGCTACTAGCTATAACTTCTGGCGTAGTGGTAAGCGTTTGATC
____________________________________________________________
consensus AAATAAAGTTGCGCCTTCGCTACTAGCTATAACTTCTGGCGTAGTGGTAAGCGTTTGATC
. : . : . : . : . : . :
rJMSF030G23+ CTAACAAGTGATATTGTAGCCAAGAAAATCACTTCTTGAACAATTGGGCTACCTTTAAAT
____________________________________________________________
consensus CTAACAAGTGATATTGTAGCCAAGAAAATCACTTCTTGAACAATTGGGCTACCTTTAAAT
. : . : . : . : . : . :
rJMSF030G23+ TAAGTTTGTATTTTACCTGTTCAAGCCAGTGGTGGTATGTCCGGCTTATATTTGTTCTTC
____________________________________________________________
consensus TAAGTTTGTATTTTACCTGTTCAAGCCAGTGGTGGTATGTCCGGCTTATATTTGTTCTTC
. : . : . : . : . : . :
rJMSF030G23+ TCCATGCCTCAAGATCAAAGATGTTCATGCCGTATGCCCATGCACACTCATTAGGATCGA
____________________________________________________________
consensus TCCATGCCTCAAGATCAAAGATGTTCATGCCGTATGCCCATGCACACTCATTAGGATCGA
. : . : . : . : . : . :
rJMSF030G23+ AACTTTTTGCTATTAGAGGGTGAGAAAAGTTCAGATAACTTTTGAAGTGCTTAAACATCA
____________________________________________________________
consensus AACTTTTTGCTATTAGAGGGTGAGAAAAGTTCAGATAACTTTTGAAGTGCTTAAACATCA
. : . : . : . : . : . :
rJMSF030G23+ CGTACTTATCCTCCCCTCTGCAGGTTTGCACTGCTCCATTCACCTTTCCATTCATGTCAA
____________________________________________________________
consensus CGTACTTATCCTCCCCTCTGCAGGTTTGCACTGCTCCATTCACCTTTCCATTCATGTCAA
. : . : . : . : . : . :
rJMSF030G23+ TGTCCCATAGAGGCGAAAGATCAGTTTGAACCACTATGTCATCATCAAGGAAGACCACTT
____________________________________________________________
consensus TGTCCCATAGAGGCGAAAGATCAGTTTGAACCACTATGTCATCATCAAGGAAGACCACTT