Contig 011345:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004O03Sequence300010757 (4)ref|XP_011077551.1|108PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Sesamum indicum] ref|XP_0110775289011345 (2)
JMSF030C08Sequence713010757 (4)gb|KGN50659.1|3e-27hypothetical protein Csa_5G204410 [Cucumis sativus]771011345 (2)ref|XP_010264625.1|259PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Nelumbo nucifera]

Alignment

This contig is upended


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rJMSF030C08+                   TTTGCCAGAGATGGTATGAACCGCAGAGATTGGCTTTCACTTGTTGCTATC
                      ____________________________________________________________
consensus                      TTTGCCAGAGATGGTATGAACCGCAGAGATTGGCTTTCACTTGTTGCTATC
 
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rJMSF030C08+          CACAGTGATTGTTGGTTGCTATCTGTGGCATTCTACTTTGGAGCTCATCTCACCCAAAAC
                      ____________________________________________________________
consensus             CACAGTGATTGTTGGTTGCTATCTGTGGCATTCTACTTTGGAGCTCATCTCACCCAAAAC
 
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rJMSF030C08+          GACAGGAGGCATCTATTTAGCTTAATAAATGATCTGCCTACCATATTTGAGGCTGTGCTG
                      ____________________________________________________________
consensus             GACAGGAGGCATCTATTTAGCTTAATAAATGATCTGCCTACCATATTTGAGGCTGTGCTG
 
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rJMSF030C08+          GAAAAAAATCCGGTGAAAGACAAGTCTAATGCGGATAGTGGAAACAAATCGCGAGGAAGC
                      ____________________________________________________________
consensus             GAAAAAAATCCGGTGAAAGACAAGTCTAATGCGGATAGTGGAAACAAATCGCGAGGAAGC
 
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rJMSF030C08+          ACAAAGAGAACTAGTGAAGGGCAGGCGAAAAATTCGTCGAAACTGGCAGATAAAAGTCGC
                      ____________________________________________________________
consensus             ACAAAGAGAACTAGTGAAGGGCAGGCGAAAAATTCGTCGAAACTGGCAGATAAAAGTCGC
 
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rJMSF030C08+          GAAAAAGAGGAAGAAGAACATGGCGAAACGCTATGTGGGAGCTGTGGAGGAAACTACAAT
                      ____________________________________________________________
consensus             GAAAAAGAGGAAGAAGAACATGGCGAAACGCTATGTGGGAGCTGTGGAGGAAACTACAAT
 
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rJMSF030C08+          GCCGATGAGTTCTGGATTGGGTGCGACGTGTGCGAGAGATGGTTCCACGGGAAATGTGTG
                      ____________________________________________________________
consensus             GCCGATGAGTTCTGGATTGGGTGCGACGTGTGCGAGAGATGGTTCCACGGGAAATGTGTG
 
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rJMSF030C08+          AAGATGACGCCGGCAAAAGCTGAGATTATACAGCAATACAAGTGCCCTTCTTGCTGCTTC
                      ____________________________________________________________
consensus             AAGATGACGCCGGCAAAAGCTGAGATTATACAGCAATACAAGTGCCCTTCTTGCTGCTTC
 
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rJMSF004O03+            ACGGGGAAGACCCTAGTACTCCCTTACATACTAAACTTTTCACATTGCATGCATCTTA
rJMSF030C08+          AAACGGGGAAGACCCTAGTACTCCCTTACATACTAAACTTTTCACATTGCATGCATCTTA
                      ____________________________________________________________
consensus             AAACGGGGAAGACCCTAGTACTCCCTTACATACTAAACTTTTCACATTGCATGCATCTTA
 
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rJMSF004O03+          CAAGATGAGATTAATTCGACGATATGATGTTCGGTCCAATCTATTCGAGCTGAGACAGGC
rJMSF030C08+          CAAGATGAGATTAATTCGACGATATGATGTTCGGTCCAATCTATTCGAGCTGAGACAGCC
                      ____________________________________________________________
consensus             CAAGATGAGATTAATTCGACGATATGATGTTCGGTCCAATCTATTCGAGCTGAGACAGGC
 
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rJMSF004O03+          CATGGATTTCAGTTCCCCTTGAATGAAGTACATATAACATATATATAGACGTCCCCTAAT
rJMSF030C08+          CATGGATTTCAGTTCCCCTTGAATGAAGTACATATAACATATATATAGACGTCCCCTAAT
                      ____________________________________________________________
consensus             CATGGATTTCAGTTCCCCTTGAATGAAGTACATATAACATATATATAGACGTCCCCTAAT
 
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rJMSF004O03+          ATAGGAAGCTGGGAGTAATATGACAGTGCACATGCAATTTATTATAGGAATTGAAGTTCC
rJMSF030C08+          ATAGGAAGCTGGGAGTAATATGACAGTGCACATGCAATTTATTATAGGAATTGAAGTTCC
                      ____________________________________________________________
consensus             ATAGGAAGCTGGGAGTAATATGACAGTGCACATGCAATTTATTATAGGAATTGAAGTTCC
 
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rJMSF004O03+          CTAATTTATTAGGGAGTAATGTAGAAGTTNTGGTCTGATATTATATTAGTT         
rJMSF030C08+          CTAATTTATTAGGGAGTAATGTAGAAGTTTTGGTCTGATATTATATTAGTTTCCTGCATG
                      ____________________________________________________________
consensus             CTAATTTATTAGGGAGTAATGTAGAAGTTTTGGTCTGATATTATATTAGTTTCCTGCATG