Contig 011344:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF044P09-                                           CCATCCAGATAGGAACACTAATCTTAGC
JMSF030B24-                                           CCATCCAGATAGGAACACTAATCTTAGC
JMSF044N11-                                        GAACCATCCAGATAGGAACACTAATCTTAGC
                      ____________________________________________________________
consensus                                          GAACCATCCAGATAGGAACACTAATCTTAGC
 
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JMSF044P09-           TTTCTTCTCCAAATATTCACTACTCTCCATTACCTAGCTAGCTAGCTAATTATTGAGTAG
JMSF030B24-           TTTCTTCTCCAAATATTCACTACTCTCCATTACCTAGCTAGCTAGCTAATTATTGAGTAG
JMSF044N11-           TTTCTTCTCCAAATATTCACTACTCTCCATTACCTAGCTAGCTAGCTAATTATTGAGTAG
                      ____________________________________________________________
consensus             TTTCTTCTCCAAATATTCACTACTCTCCATTACCTAGCTAGCTAGCTAATTATTGAGTAG
 
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JMSF044P09-           TTTTAGTTATATATTATGGCGCCGCCACCTTCTTTTAATTGTGAGTTAAACACAGTTTGT
JMSF030B24-           TTTTAGTTATATATTATGGCGCCGCCACCTTCTTTTAATTGTGAGTTAAACACAGTTTGT
JMSF044N11-           TTTTAGTTATATATTATGGCGCCGCCACCTTCTTTTAATTGTGAGTTAAACACAGTTTGT
                      ____________________________________________________________
consensus             TTTTAGTTATATATTATGGCGCCGCCACCTTCTTTTAATTGTGAGTTAAACACAGTTTGT
 
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JMSF044P09-           GTGATGGATGCCTCCTCCTACTTGGGTTCACTCTTGGTCCGCCGACTCCTCCATAGAGGC
JMSF030B24-           GTGATGGATGCCTCCTCCTACTTGGGTTCACTCTTGGTCCGCCGACTCCTCCATAGAGGC
JMSF044N11-           GTGATGGATGCCTCCTCCTACTTGGGTTCACTCTTGGTCCGCCGACTCCTCCATAGAGGC
                      ____________________________________________________________
consensus             GTGATGGATGCCTCCTCCTACTTGGGTTCACTCTTGGTCCGCCGACTCCTCCATAGAGGC
 
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JMSF044P09-           TACACCGTCCACGCTGCAATTCAAACCCCCCATGCTTTTGCTGTGGGTGGTGAAGAGGCG
JMSF030B24-           TACACCGTCCACGCTGCAATTCAAACCCCCCATGCTTTTGCTGTGGGTGGTGAAGAGGCG
JMSF044N11-           TACACCGTCCACGCTGCAATTCAAACCCCCCATGCTTTTGCTGTGGGTGGTGAAGAGGCG
                      ____________________________________________________________
consensus             TACACCGTCCACGCTGCAATTCAAACCCCCCATGCTTTTGCTGTGGGTGGTGAAGAGGCG
 
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JMSF044P09-           TTAGCACCATTGAATGTGGTATTGGAATGGGAGAACAATGAGAAAGTGAAGGTATTTGAG
JMSF030B24-           TTAGCACCATTGAATGTGGTATTGGAATGGGAGAACAATGAGAAAGTGAAGGTATTTGAG
JMSF044N11-           TTAGCACCATTGAATGTGGTATTGGAATGGGAGAACAATGAGAAAGTGAAGGTATTTGAG
                      ____________________________________________________________
consensus             TTAGCACCATTGAATGTGGTATTGGAATGGGAGAACAATGAGAAAGTGAAGGTATTTGAG
 
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JMSF044P09-           TTGGACCTATTTGATTACCATAGCATAGTTGATGCTTTGAAAGGATGCTGTGGTTTGTTC
JMSF030B24-           TTGGACCTATTTGATTACCATAGCATAGTTGATGCTTTGAAAGGATGCTGTGGTTTGTTC
JMSF044N11-           TTGGACCTATTTGATTACCATAGCATAGTTGATGCTTTGAAAGGATGCTGTGGTTTGTTC
                      ____________________________________________________________
consensus             TTGGACCTATTTGATTACCATAGCATAGTTGATGCTTTGAAAGGATGCTGTGGTTTGTTC
 
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JMSF044P09-           TACTCCTTTGAGCCTCCCTTGGATCACTCTACCTATGATGAATACATGGGAGAAGTGGAG
JMSF030B24-           TACTCCTTTGAGCCTCCCTTGGATCACTCTACCTATGATGAATACATGGGAGAAGTGGAG
JMSF044N11-           TACTCCTTTGAGCCTCCCTTGGATCACTCTACCTATGATGAATACATGGGAGAAGTGGAG
                      ____________________________________________________________
consensus             TACTCCTTTGAGCCTCCCTTGGATCACTCTACCTATGATGAATACATGGGAGAAGTGGAG
 
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JMSF044P09-           GTAAGAGCAGCACATAATGTAGTGGAGGCATGTGCTCAAACCGACAGCATAGACAAGGTT
JMSF030B24-           GTAAGAGCAGCACATAATGTAGTGGAGGCATGTGCTCAAACCGACAGCATAGACAAGGTT
JMSF044N11-           GTAAGAGCAGCACATAATGTAGTGGAGGCATGTGCTCAAACCGACAGCATAGACAAGGTT
                      ____________________________________________________________
consensus             GTAAGAGCAGCACATAATGTAGTGGAGGCATGTGCTCAAACCGACAGCATAGACAAGGTT
 
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JMSF044P09-           GTGTTCACTTCATCAGCCACTGCAATTATATGGAACTCTACTCATGCTGATAAAAGATCT
JMSF030B24-           GTGTTCACTTCATCAGCCACTGCAATTATATGGAACTCTACTCATGCTGATAAAAGATCT
JMSF044N11-           GTGTTCACTTCATCAGCCACTGCAATTATATGGAACTCTACTCATGCTGATAAAAGATCT
rJMSF044N11+                                                     ATGCTGATAAAAGATCT
                      ____________________________________________________________
consensus             GTGTTCACTTCATCAGCCACTGCAATTATATGGAACTCTACTCATGCTGATAAAAGATCT
 
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JMSF044P09-           TCAGATCTTGATGAAAGGCATTGGAGTGACATCAATTTTTGTCGCAATTTCAAGTTATGG
JMSF030B24-           TCAGATCTTGATGAAAGGCATTGGAGTGACATCAATTTTTGTCGCAATTTCAAGTTATGG
JMSF044N11-           TCAGATCTTGATGAAAGGCATTGGAGTGACATCAATTTTTGTCGCAATTTCAAGTTATGG
rJMSF044N11+          TCAGATCTTGATGAAAGGCATTGGAGTGACATCAATTTTTGTCGCAATTTCAAGTTATGG
                      ____________________________________________________________
consensus             TCAGATCTTGATGAAAGGCATTGGAGTGACATCAATTTTTGTCGCAATTTCAAGTTATGG
 
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JMSF044P09-           CACGCGCTGTCGAAAACGGTTGCGGAGAAAAGCGCGTGGGCGTTGGCAATGGACAGAGGG
JMSF030B24-           CACGCGCTGTC                                                 
JMSF044N11-           CACGCGCTGTCGAAAACGGTTGCGGAGAAAAGCGCGTGGGCGTTGGCAATGGACAGAGGG
rJMSF044N11+          CACGCGCTGTCGAAAACGGTTGCGGAGAAAAGCGCGTGGGCGTTGGCAATGGACAGAGGG
rJMSF044P09+                                        AGCGCGTGGGCGTTGGCAATGGACAGAGGG
                      ____________________________________________________________
consensus             CACGCGCTGTCGAAAACGGTTGCGGAGAAAAGCGCGTGGGCGTTGGCAATGGACAGAGGG
 
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JMSF044P09-           GTGAACATGGTTTCGGTCAACGCGGGACTTGTGCTGTCTCCTGATCTA            
JMSF044N11-           GTGAACATGGTTTCGGTCAACGCGGGACTTGTGCTGTCTCCTGATCTA            
rJMSF044N11+          GTGAACATGGTTTCGGTCAACGCGGGACTTGTGCTGTCTCCTGATCTAACGATCACAAAC
rJMSF044P09+          GTGAACATGGTTTCGGTCAACGCGGGACTTGTGCTGTCTCCTGATCTAACGATCACAAAC
                      ____________________________________________________________
consensus             GTGAACATGGTTTCGGTCAACGCGGGACTTGTGCTGTCTCCTGATCTAACGATCACAAAC
 
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rJMSF044N11+          CCTTATCTGAAAGGAGCAGCGGAGATGTACGAAGATGGAGTGTTTGTGACCGTCGATCTT
rJMSF044P09+          CCTTATCTGAAAGGAGCAGCGGAGATGTACGAAGATGGAGTGTTTGTGACCGTCGATCTT
                      ____________________________________________________________
consensus             CCTTATCTGAAAGGAGCAGCGGAGATGTACGAAGATGGAGTGTTTGTGACCGTCGATCTT
 
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rJMSF044N11+          GATTTCTTGGTGGATGCCCACGTTAGCGTGTACGAGGATGTCTCAACATACGGTCGATAT
rJMSF044P09+          GATTTCTTGGTGGATGCCCACGTTAGCGTGTACGAGGATGTCTCAACATACGGTCGATAT
                      ____________________________________________________________
consensus             GATTTCTTGGTGGATGCCCACGTTAGCGTGTACGAGGATGTCTCAACATACGGTCGATAT
 
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rJMSF044N11+          TTGTGCTTTAATCACACCATAAATCACACCGCGGAAGCTGCTAAACTTGCCCAAACCTTG
rJMSF044P09+          TTGTGCTTTAATCACACCATAAATCACACCGCGGAAGCTGCTAAACTTGCCCAAACCTTG
                      ____________________________________________________________
consensus             TTGTGCTTTAATCACACCATAAATCACACCGCGGAAGCTGCTAAACTTGCCCAAACCTTG
 
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rJMSF044N11+          AATCCTTCGTCTTCACATCTTCCAAGGTGCGAGGATGAGACAAGGATAATTGAACAAAGG
rJMSF044P09+          AATCCTTCGTCTTCACATCTTCCAAGGTGCGAGGATGAGACAAGGATAATTGAACAAAGG
                      ____________________________________________________________
consensus             AATCCTTCGTCTTCACATCTTCCAAGGTGCGAGGATGAGACAAGGATAATTGAACAAAGG
 
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rJMSF044N11+          ATAAGCAACAAGAATTGAACAAAGTGATGGTTGATTTTGACAGAGGAAGCCATGTCCAAG
rJMSF044P09+          ATAAGCAACAAGAATTGAACAAAGTGATGGTTGATTTTGACAGAGGAAGCCATGTCCAAG
rJMSF030B24+                            ACAACGTGATGGTTNATTTNGACAGAGGANGCCATGTCCAAG
                      ____________________________________________________________
consensus             ATAAGCAACAAGAATTGAACAAAGTGATGGTTGATTTTGACAGAGGAAGCCATGTCCAAG
 
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rJMSF044N11+          TGGACTGAACATACAACATGCTCCGGAAACATGTCCAAAGACATTTAATACTAGGAACAA
rJMSF044P09+          TGGACTGAACATACAACATGCTCCGGAAACATGTCCAAAGACATTTAATACTAGGAACAA
rJMSF030B24+          TGGNCNGANCATNCNNCATGTTCCGGAAACATGTCCAAAGACATTTAATACTAGGAACAA
                      ____________________________________________________________
consensus             TGGACTGAACATACAACATGCTCCGGAAACATGTCCAAAGACATTTAATACTAGGAACAA
 
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rJMSF044N11+          AAAACAAAAAAAGGTGGCATAATGCAAGGCATGTAATCATGGGTGAAAGTCAAAAGCTAC
rJMSF044P09+          AAAACAAAAAAAGGTGGCATAATGCAAGGCATGTAATCATGGGTGAAAGTCAAAAGCTAC
rJMSF030B24+          AAAACAAAAAAAGGNGGCATANTGCAAGGCANGTAATCATGGGTGAAAGTCAANAGCTNC
                      ____________________________________________________________
consensus             AAAACAAAAAAAGGTGGCATAATGCAAGGCATGTAATCATGGGTGAAAGTCAAAAGCTAC
 
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rJMSF044N11+          GTTGTAGATAGAAGCAAGAAATAGGCATGTGAAATTAGTAAAATAAGTGGATGGCTTTGA
rJMSF044P09+          GTTGTAGATAGAAGCAAGAAATAGGCATGTGAAATTAGTAAAATAAGTGGATGGCTTTGA
rJMSF030B24+          GTTGTAGATAGNAGCAAGANATNGGCATGTGANATTAGTAAANTAAGTGGATGGCTNNGA
                      ____________________________________________________________
consensus             GTTGTAGATAGAAGCAAGAAATAGGCATGTGAAATTAGTAAAATAAGTGGATGGCTTTGA
 
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rJMSF044N11+          GGCAGCACAATAATATCAATTATTATACTATATATTATGATTTATATTG           
rJMSF044P09+          GGCAGCACAATAATATCAATTATTATACTATATATTATGATTTATATTG           
rJMSF030B24+          GGCAGCACAATAATATCAANTATTATNCTATATANTATGATTTNTATTGTGTCGTAAATT
                      ____________________________________________________________
consensus             GGCAGCACAATAATATCAATTATTATACTATATATTATGATTTATATTGTGTCGTAAATT
 
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rJMSF030B24+          NTGATACAAAAATTATGTATCTTTAGTNAACATCNTGTGCACNTACAGTTNATAGTTTTT
                      ____________________________________________________________
consensus             NTGATACAAAAATTATGTATCTTTAGTNAACATCNTGTGCACNTACAGTTNATAGTTTTT