Contig 011342:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029E05Sequence639013390 (3)ref|XP_010526854.1|4e-82PREDICTED: SRSF protein kinase 2-like [Tarenaya hassleriana]735011342 (2)
JMSF041L09Sequence770013390 (3)emb|CDP01781.1|9e-111unnamed protein product [Coffea canephora]818011342 (2)

Alignment

This contig is upended


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rJMSF041L09+                                                            TCTGGTACTC
                      ____________________________________________________________
consensus                                                               TCTGGTACTC
 
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rJMSF041L09+          AAAAAGNTAACGTTGGGATGAGTAGCCTTCAAGTTAAGGTGGGTAAGTGATAGTAGGGAT
                      ____________________________________________________________
consensus             AAAAAGNTAACGTTGGGATGAGTAGCCTTCAAGTTAAGGTGGGTAAGTGATAGTAGGGAT
 
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rJMSF041L09+          TGATGGTTGTCACTGCCAGTGCCCAAGTATTATGCCCCTCTCTCCACCTGTATGATATTA
                      ____________________________________________________________
consensus             TGATGGTTGTCACTGCCAGTGCCCAAGTATTATGCCCCTCTCTCCACCTGTATGATATTA
 
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rJMSF041L09+          CTTGTGATTTTTATGTTCTACCGTTTTATACGTTTCAATAAGATTTGATTCATTCGTTAG
                      ____________________________________________________________
consensus             CTTGTGATTTTTATGTTCTACCGTTTTATACGTTTCAATAAGATTTGATTCATTCGTTAG
 
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rJMSF041L09+          TAGAATGCCCTTAGTACCGAATGATCATCCCTAGGAAATGACATCAGTGAGATCAAATTG
                      ____________________________________________________________
consensus             TAGAATGCCCTTAGTACCGAATGATCATCCCTAGGAAATGACATCAGTGAGATCAAATTG
 
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rJMSF041L09+          ACCCCAGTTCCAAGGTATCACAGTTGAAGCTGAACTTGTAGATACTTCAGCTCTATAGGT
                      ____________________________________________________________
consensus             ACCCCAGTTCCAAGGTATCACAGTTGAAGCTGAACTTGTAGATACTTCAGCTCTATAGGT
 
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rJMSF041L09+          GACTGTTTTAGTGATGCTTGCATTCACGAGACAAATTCCTTCCATATTTCATTCCAGGAG
rJMSF029E05+                                                                 AGGAG
                      ____________________________________________________________
consensus             GACTGTTTTAGTGATGCTTGCATTCACGAGACAAATTCCTTCCATATTTCATTCCAGGAG
 
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rJMSF041L09+          AGATGATGACTTTTGGGTTCCTTTCATGAACATGGATGGCTCTGCATTGACTTGATGTTG
rJMSF029E05+          AGATGATGACTTTTGGGTTCCTTTCATGAACATGGATGGCTCTGCATTGACTTGATGTTG
                      ____________________________________________________________
consensus             AGATGATGACTTTTGGGTTCCTTTCATGAACATGGATGGCTCTGCATTGACTTGATGTTG
 
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rJMSF041L09+          GTGATTGAACCCTCTTTCTGGGACACAACTCCTGCATGTCATTGAACCTGCTTGAGATTC
rJMSF029E05+          GTGATTGAACCCTCTTTCTGGGACACAACTCCTGCATGTCATTGAACCTGCTTGAGATTC
                      ____________________________________________________________
consensus             GTGATTGAACCCTCTTTCTGGGACACAACTCCTGCATGTCATTGAACCTGCTTGAGATTC
 
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rJMSF041L09+          TAGATGAGAGCCACTGGTGGTGAAAAAGAAATTTTACCTGAAGATTTCTCTTCATTACAT
rJMSF029E05+          TAGATGAGAGCCACTGGTGGTGAAAAAGAAATTTTACCTGAAGATTTCTCTTCATTACAT
                      ____________________________________________________________
consensus             TAGATGAGAGCCACTGGTGGTGAAAAAGAAATTTTACCTGAAGATTTCTCTTCATTACAT
 
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rJMSF041L09+          GAGCTATTGGAGTCGGGATTCTTCTTGCCAAACTTGGTACCACAATGGCTTCCCATATAT
rJMSF029E05+          GAGCTATTGGAGTCGGGATTCTTCTTGCCAAACTTGATACCACAATGGCTTCCCATATAT
                      ____________________________________________________________
consensus             GAGCTATTGGAGTCGGGATTCTTCTTGCCAAACTTGGTACCACAATGGCTTCCCATATAT
 
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rJMSF041L09+          TTTTGTCTTTTCAAATGGTGCTTGTGATTTTAGGGAACTGGTAGCCAGTCTAATCCGGTG
rJMSF029E05+          TTTTGTCTTTTCAAATGGTGCTTGTGATTTTAGGGAACTGGTAGCCAGTCTAATCCGGTG
                      ____________________________________________________________
consensus             TTTTGTCTTTTCAAATGGTGCTTGTGATTTTAGGGAACTGGTAGCCAGTCTAATCCGGTG
 
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rJMSF041L09+          GAGCTTGATCTGAGTGTCACATAACAGAAGCTATATGTGGAGTATGACTTTTGTACACAA
rJMSF029E05+          GAGCTTGATCTGAGTGTCACATAACAGAAGCTATATGTGGAGTATGACTTTTGTACACAA
                      ____________________________________________________________
consensus             GAGCTTGATCTGAGTGTCACATAACAGAAGCTATATGTGGAGTATGACTTTTGTACACAA
 
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rJMSF041L09+          GAATTTTTTTATTATTTTTTTCTTTTATTTTTTCAGGTTATAAGTTGTCACTGACTTATA
rJMSF029E05+          GAATTTTTTTATTATTTTTTTCTTTTATTTTTTCAGGTTATAAGTTGTCACTGACTTATA
                      ____________________________________________________________
consensus             GAATTTTTTTATTATTTTTTTCTTTTATTTTTTCAGGTTATAAGTTGTCACTGACTTATA
 
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rJMSF041L09+          ACTGTATTACTTTTGATTGTGCAT                                    
rJMSF029E05+          ACTGTATTACTTTTGATTGTGCATTATTTGTGCTGATATTAAACTCGCATTCTTCATTTG
                      ____________________________________________________________
consensus             ACTGTATTACTTTTGATTGTGCATTATTTGTGCTGATATTAAACTCGCATTCTTCATTTG
 
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rJMSF029E05+          CAACTTTCTGGATGTATGTGTGCCTTTTTCTTCATAAGTTTGTACCACGTTTTAATGCTC
                      ____________________________________________________________
consensus             CAACTTTCTGGATGTATGTGTGCCTTTTTCTTCATAAGTTTGTACCACGTTTTAATGCTC