Contig 011338:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027F24Sequence658009087 (3)gb|KDP45204.1|9e-57hypothetical protein JCGZ_15069 [Jatropha curcas]717011338 (2)ref|XP_004242451.1|4e-102PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase A
JMSF029K15Sequence659009087 (3)gb|KDP45204.1|8e-57hypothetical protein JCGZ_15069 [Jatropha curcas]766011338 (2)ref|XP_006366814.1|3e-120PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase A

Alignment

This contig is upended


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rJMSF029K15+                                                          CTAAAATCGGGA
                      ____________________________________________________________
consensus                                                             CTAAAATCGGGA
 
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rJMSF029K15+          TTGGGCAGCCAAAGGGTTTGCTTGGCTTCACCACAACTGCAATCCCCGGATTCTCCACCG
                      ____________________________________________________________
consensus             TTGGGCAGCCAAAGGGTTTGCTTGGCTTCACCACAACTGCAATCCCCGGATTCTCCACCG
 
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rJMSF029K15+          AAACATCAGCTCTAAATGCATCTTATTGGACGCTGATTTCGAACCCAAGATATCTGATTT
rJMSF027F24+             CATCAGCTCTAAATGCATCTTATTGGACGCTGATTTCGAACCCAAGATATCTGATTT
                      ____________________________________________________________
consensus             AAACATCAGCTCTAAATGCATCTTATTGGACGCTGATTTCGAACCCAAGATATCTGATTT
 
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rJMSF029K15+          TGGGCTCGCAAGGCTCATGAACCCGGTCGACACTCATTTGAGTACATTCGTGAACGGTGA
rJMSF027F24+          TGGGCTCGCAAGGCTCATGAACCCGGTCGACACTCATTTGAGTACATTCGTGAACGGTGA
                      ____________________________________________________________
consensus             TGGGCTCGCAAGGCTCATGAACCCGGTCGACACTCATTTGAGTACATTCGTGAACGGTGA
 
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rJMSF029K15+          ATTCGGGGACTTGGGTTATGTTGCCCCCGAATATGCACGAACTTTGGTTGCCACGCCAAA
rJMSF027F24+          ATTCGGGGACTTGGGTTATGTTGCCCCCGAATATGCACGAACTTTGGTTGCCACGCCAAA
                      ____________________________________________________________
consensus             ATTCGGGGACTTGGGTTATGTTGCCCCCGAATATGCACGAACTTTGGTTGCCACGCCAAA
 
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rJMSF029K15+          AGGAGATGTTTACAGCTTTGGCGTAGTACTCCTCGAGCTGGTTACTGGCGAGAGGCCTAC
rJMSF027F24+          AGGAGATGTTTACAGCTTTGGCGTAGTACTCCTCGAGCTGGTTACTGGCGAGAGGCCTAC
                      ____________________________________________________________
consensus             AGGAGATGTTTACAGCTTTGGCGTAGTACTCCTCGAGCTGGTTACTGGCGAGAGGCCTAC
 
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rJMSF029K15+          CTACGTGAGCAAGGCCCCCGAGACCTTCAAGGGAAGTTTGGTGGAATGGATCACCATTCT
rJMSF027F24+          CTACGTGAGCAAGGCCCCCGAGACCTTCAAGGGAAGTTTGGTGGAATGGATCACCATTCT
                      ____________________________________________________________
consensus             CTACGTGAGCAAGGCCCCCGAGACCTTCAAGGGAAGTTTGGTGGAATGGATCACCATTCT
 
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rJMSF029K15+          TTCCGGTGAATCCAAACTAAAAGATTCAATCGACACATCTTTGGTCGGAAAGGGCTATGA
rJMSF027F24+          TTCCGGTGAATCCAAACTAAAAGATTCAATCGACACATCTTTGGTCGGAAAGGGCTATGA
                      ____________________________________________________________
consensus             TTCCGGTGAATCCAAACTAAAAGATTCAATCGACACATCTTTGGTCGGAAAGGGCTATGA
 
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rJMSF029K15+          TGCCGAGGTTCTTCAGGTTCTCAAAGTCGCCTGTCGCTGTGTGCTGCCAGCTGTCCCGAA
rJMSF027F24+          TGCCGAGGTTCTTCAGGTTCTCAAAGTCGCCTGTCGCTGTGTGCTGCCAGCTGTCCCGAA
                      ____________________________________________________________
consensus             TGCCGAGGTTCTTCAGGTTCTCAAAGTCGCCTGTCGCTGTGTGCTGCCAGCTGTCCCGAA
 
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rJMSF029K15+          GGAGAGACCCTCGATGTTTGAAGTGTACCAGCTTCTGAGAGCCATTGGAGAGCATTACCA
rJMSF027F24+          GGAGAGACCCTCGATGTTTGAAGTGTACCAGCTTCTGAGAGCCATTGGAGAGCATTACCA
                      ____________________________________________________________
consensus             GGAGAGACCCTCGATGTTTGAAGTGTACCAGCTTCTGAGAGCCATTGGAGAGCATTACCA
 
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rJMSF029K15+          TTTCACAACAGATGATGAGATTTTGTTGCCCACAGAGACCGAGGACGGTTTCCAACTAGA
rJMSF027F24+          TTTCACAACAGATGATGAGATTTTGTTTCCCACAGAGACCGAGGACGGTTTCCAACTAGA
                      ____________________________________________________________
consensus             TTTCACAACAGATGATGAGATTTTGTTTCCCACAGAGACCGAGGACGGTTTCCAACTAGA
 
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rJMSF029K15+          AGAACTGATCGTCGCCCGAGAGACATAGCTGCTTGTTGAAAAGGTAAGTAAAGACAGTAG
rJMSF027F24+          AGAACTGATCGTCGCCCGAGAGACATAGCTGCTTGTTGAAAAGGTAAGTAAAGACAGTAG
                      ____________________________________________________________
consensus             AGAACTGATCGTCGCCCGAGAGACATAGCTGCTTGTTGAAAAGGTAAGTAAAGACAGTAG
 
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rJMSF029K15+          TTGTAACTGGATGGAACCATATAATATATGTAATTATGTGTTACAGATGCTCCTAAAATA
rJMSF027F24+          TTGTAACTGGATGGAACCATATAATATATGTAATTATGTGTTACAGATGCTCCTAAAATA
                      ____________________________________________________________
consensus             TTGTAACTGGATGGAACCATATAATATATGTAATTATGTGTTACAGATGCTCCTAAAATA
 
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rJMSF029K15+          ATTCCTTAGATGGTGAACAATTTTCTGTAATTTT                          
rJMSF027F24+          ATTCCTTAGATGGTGAACAATTTTCTGTAATTTTTGGTTTTTTCATTCCACTGAAATTTT
                      ____________________________________________________________
consensus             ATTCCTTAGATGGTGAACAATTTTCTGTAATTTTTGGTTTTTTCATTCCACTGAAATTTT