Contig 011337:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005P06Sequence309006509 (8)ref|XP_009769365.1|2e-29PREDICTED: receptor-like protein 12 [Nicotiana sylvestris]299011337 (2)ref|XP_006364902.1|6e-40PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Solanum
JMSF027D04Sequence683000587 (2)ref|XP_011094122.1|6e-106PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Sesamum indi746011337 (2)ref|XP_006364902.1|1e-121PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Solanum

Alignment

This contig is upended


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rJMSF027D04+                                            ACAAAGGATGGTCCAAATCTTCTCAG
                      ____________________________________________________________
consensus                                               ACAAAGGATGGTCCAAATCTTCTCAG
 
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rJMSF027D04+          TCATTTCTGCATGTCTCTGGCTCACAGAATCTTCTCAAACAAAGTTCTTGCAGAGCTGGA
                      ____________________________________________________________
consensus             TCATTTCTGCATGTCTCTGGCTCACAGAATCTTCTCAAACAAAGTTCTTGCAGAGCTGGA
 
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rJMSF027D04+          ATGTCTGGTTAGCAGAACACCTTATGTCGAATTGATATCTCACCCCACTTGGCACTCTCG
                      ____________________________________________________________
consensus             ATGTCTGGTTAGCAGAACACCTTATGTCGAATTGATATCTCACCCCACTTGGCACTCTCG
 
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rJMSF027D04+          AACATCGTCATGGACGCTCTTGATGAAGGTACCTCAGTCAATTCTCAATGCAGGGAACGA
                      ____________________________________________________________
consensus             AACATCGTCATGGACGCTCTTGATGAAGGTACCTCAGTCAATTCTCAATGCAGGGAACGA
 
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rJMSF027D04+          GATTCATGCATCCTACCTGGATAAGAATGTGAAGTCTCAGTTCCGGACTAAGGTTTCAGT
                      ____________________________________________________________
consensus             GATTCATGCATCCTACCTGGATAAGAATGTGAAGTCTCAGTTCCGGACTAAGGTTTCAGT
 
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rJMSF027D04+          GTATGATGATTGCATCAGCGTGGAAGGTGAAGGTGCCCCCAACGTCGTCGGTCTGTTCAA
                      ____________________________________________________________
consensus             GTATGATGATTGCATCAGCGTGGAAGGTGAAGGTGCCCCCAACGTCGTCGGTCTGTTCAA
 
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rJMSF027D04+          GGGAAAATCTGAGGTCACGTGCTCTATCAACAGATATGATTGTGATTTAGCAGATCTTCC
                      ____________________________________________________________
consensus             GGGAAAATCTGAGGTCACGTGCTCTATCAACAGATATGATTGTGATTTAGCAGATCTTCC
 
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rJMSF005P06+                     TGCAGCAGGTAGCCAGCCAAGTTATTCGGTGGCNTCGTGAGGAGGCTCT
rJMSF027D04+          TGCCATTCTGCTGCAGCAGGTAGCCAGCCAAGTTATTCGGTGGCTTCGTGAGGAGGCTCT
                      ____________________________________________________________
consensus             TGCCATTCTGCTGCAGCAGGTAGCCAGCCAAGTTATTCGGTGGCTTCGTGAGGAGGCTCT
 
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rJMSF005P06+          AATGGTGGGCATTAAAGCTAATAGAGACTTTTTATCATTGTGGTTTGAGTTGGAGCAAGG
rJMSF027D04+          AATGGTGGGCATTAAAGCTAATAGAGACTTTTTATCATTGTGGTTTGAGTTGGAGCAAGG
                      ____________________________________________________________
consensus             AATGGTGGGCATTAAAGCTAATAGAGACTTTTTATCATTGTGGTTTGAGTTGGAGCAAGG
 
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rJMSF005P06+          CGAGACAGTNGGTCTCGTGGCACATATTGACCCCAAAGATCCTATAGGATGCATCTCTTG
rJMSF027D04+          CGAGACAGTTGGTCTCGTGGCACATATTGACCCCAAAGATCCTATAGGATGCATCTCTTG
                      ____________________________________________________________
consensus             CGAGACAGTTGGTCTCGTGGCACATATTGACCCCAAAGATCCTATAGGATGCATCTCTTG
 
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rJMSF005P06+          GTGGTTGGTAATGGAGGATGGTTACTCGGATGAAAACAAACTTAAAGTTGACATTTCTAA
rJMSF027D04+          GTGGTTGGTAATGGAGGATGGTTACTCGGATGAAAACAAACTTAAAGTTGACATTTCTAA
                      ____________________________________________________________
consensus             GTGGTTGGTAATGGAGGATGGTTACTCGGATGAAAACAAACTTAAAGTTGACATTTCTAA
 
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rJMSF005P06+          TGNGGAATCAGAANGAAGGAAGNTCTTAGGCTATTTGTCTTTAGGTGTATT         
rJMSF027D04+          TGGGGAATCAGAAAGAAGGAAGTTCTTAGGCTATTTGTCTTTAGGTGTATTGTACTCTAC
                      ____________________________________________________________
consensus             TGGGGAATCAGAAAGAAGGAAGTTCTTAGGCTATTTGTCTTTAGGTGTATTGTACTCTAC
 
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rJMSF027D04+          TTTGTTGGACTTGGTTAGCCTGAGCAGTGGTTCAGGGATGAATTAAACTCATTCCATCTT
                      ____________________________________________________________
consensus             TTTGTTGGACTTGGTTAGCCTGAGCAGTGGTTCAGGGATGAATTAAACTCATTCCATCTT