Contig 011337:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005P06Sequence309006509 (8)ref|XP_009769365.1|2e-29PREDICTED: receptor-like protein 12 [Nicotiana sylvestris]299011337 (2)ref|XP_006364902.1|6e-40PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Solanum
JMSF027D04Sequence683000587 (2)ref|XP_011094122.1|6e-106PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Sesamum indi746011337 (2)ref|XP_006364902.1|1e-121PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Solanum

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF027D04+ ACAAAGGATGGTCCAAATCTTCTCAG
                      ____________________________________________________________
consensus ACAAAGGATGGTCCAAATCTTCTCAG
 
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rJMSF027D04+ TCATTTCTGCATGTCTCTGGCTCACAGAATCTTCTCAAACAAAGTTCTTGCAGAGCTGGA
                      ____________________________________________________________
consensus TCATTTCTGCATGTCTCTGGCTCACAGAATCTTCTCAAACAAAGTTCTTGCAGAGCTGGA
 
. : . : . : . : . : . :
rJMSF027D04+ ATGTCTGGTTAGCAGAACACCTTATGTCGAATTGATATCTCACCCCACTTGGCACTCTCG
                      ____________________________________________________________
consensus ATGTCTGGTTAGCAGAACACCTTATGTCGAATTGATATCTCACCCCACTTGGCACTCTCG
 
. : . : . : . : . : . :
rJMSF027D04+ AACATCGTCATGGACGCTCTTGATGAAGGTACCTCAGTCAATTCTCAATGCAGGGAACGA
                      ____________________________________________________________
consensus AACATCGTCATGGACGCTCTTGATGAAGGTACCTCAGTCAATTCTCAATGCAGGGAACGA
 
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rJMSF027D04+ GATTCATGCATCCTACCTGGATAAGAATGTGAAGTCTCAGTTCCGGACTAAGGTTTCAGT
                      ____________________________________________________________
consensus GATTCATGCATCCTACCTGGATAAGAATGTGAAGTCTCAGTTCCGGACTAAGGTTTCAGT
 
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rJMSF027D04+ GTATGATGATTGCATCAGCGTGGAAGGTGAAGGTGCCCCCAACGTCGTCGGTCTGTTCAA
                      ____________________________________________________________
consensus GTATGATGATTGCATCAGCGTGGAAGGTGAAGGTGCCCCCAACGTCGTCGGTCTGTTCAA
 
. : . : . : . : . : . :
rJMSF027D04+ GGGAAAATCTGAGGTCACGTGCTCTATCAACAGATATGATTGTGATTTAGCAGATCTTCC
                      ____________________________________________________________
consensus GGGAAAATCTGAGGTCACGTGCTCTATCAACAGATATGATTGTGATTTAGCAGATCTTCC
 
. : . : . : . : . : . :
rJMSF005P06+ TGCAGCAGGTAGCCAGCCAAGTTATTCGGTGGCNTCGTGAGGAGGCTCT
rJMSF027D04+ TGCCATTCTGCTGCAGCAGGTAGCCAGCCAAGTTATTCGGTGGCTTCGTGAGGAGGCTCT
                      ____________________________________________________________
consensus TGCCATTCTGCTGCAGCAGGTAGCCAGCCAAGTTATTCGGTGGCTTCGTGAGGAGGCTCT
 
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rJMSF005P06+ AATGGTGGGCATTAAAGCTAATAGAGACTTTTTATCATTGTGGTTTGAGTTGGAGCAAGG
rJMSF027D04+ AATGGTGGGCATTAAAGCTAATAGAGACTTTTTATCATTGTGGTTTGAGTTGGAGCAAGG
                      ____________________________________________________________
consensus AATGGTGGGCATTAAAGCTAATAGAGACTTTTTATCATTGTGGTTTGAGTTGGAGCAAGG
 
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rJMSF005P06+ CGAGACAGTNGGTCTCGTGGCACATATTGACCCCAAAGATCCTATAGGATGCATCTCTTG
rJMSF027D04+ CGAGACAGTTGGTCTCGTGGCACATATTGACCCCAAAGATCCTATAGGATGCATCTCTTG
                      ____________________________________________________________
consensus CGAGACAGTTGGTCTCGTGGCACATATTGACCCCAAAGATCCTATAGGATGCATCTCTTG
 
. : . : . : . : . : . :
rJMSF005P06+ GTGGTTGGTAATGGAGGATGGTTACTCGGATGAAAACAAACTTAAAGTTGACATTTCTAA
rJMSF027D04+ GTGGTTGGTAATGGAGGATGGTTACTCGGATGAAAACAAACTTAAAGTTGACATTTCTAA
                      ____________________________________________________________
consensus GTGGTTGGTAATGGAGGATGGTTACTCGGATGAAAACAAACTTAAAGTTGACATTTCTAA
 
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rJMSF005P06+ TGNGGAATCAGAANGAAGGAAGNTCTTAGGCTATTTGTCTTTAGGTGTATT
rJMSF027D04+ TGGGGAATCAGAAAGAAGGAAGTTCTTAGGCTATTTGTCTTTAGGTGTATTGTACTCTAC
                      ____________________________________________________________
consensus TGGGGAATCAGAAAGAAGGAAGTTCTTAGGCTATTTGTCTTTAGGTGTATTGTACTCTAC
 
. : . : . : . : . : . :
rJMSF027D04+ TTTGTTGGACTTGGTTAGCCTGAGCAGTGGTTCAGGGATGAATTAAACTCATTCCATCTT
                      ____________________________________________________________
consensus TTTGTTGGACTTGGTTAGCCTGAGCAGTGGTTCAGGGATGAATTAAACTCATTCCATCTT