Contig 011335:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026G04Sequence715011335 (2)ref|XP_006351584.1|6e-84PREDICTED: protein IQ-DOMAIN 1-like isoform X2 [Solanum tuberosum]746011335 (2)ref|XP_006351583.1|5e-57PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


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JMSF026G04-                               GCAGGCTGTGCAGAAGATGCTCGAAGAGCACCGGGGCATG
                      ____________________________________________________________
consensus                                 GCAGGCTGTGCAGAAGATGCTCGAAGAGCACCGGGGCATG
 
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JMSF026G04-           GTCGATTGCTTGAAAGAAGCTGAGGAAGGGTGGTGTAATAGTAAAGGAACACTTGAAGAG
                      ____________________________________________________________
consensus             GTCGATTGCTTGAAAGAAGCTGAGGAAGGGTGGTGTAATAGTAAAGGAACACTTGAAGAG
 
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JMSF026G04-           GTTAAAGCTAAGATACATATGAGGCAAGAGGGCGCTTTCAAGAGAGAGCGAGCACTTGTC
                      ____________________________________________________________
consensus             GTTAAAGCTAAGATACATATGAGGCAAGAGGGCGCTTTCAAGAGAGAGCGAGCACTTGTC
 
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JMSF026G04-           TACTCTCTCGTTCATAAGGAGAGATCAAGCTCTGATGCTCAGACAACCATATCTGTTCCC
                      ____________________________________________________________
consensus             TACTCTCTCGTTCATAAGGAGAGATCAAGCTCTGATGCTCAGACAACCATATCTGTTCCC
 
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JMSF026G04-           TCTTTCAAGAGCTGCAACTTGGACAAGAACAGCTGGGGATGGAGCTGGCTAGAGCGATGG
rJMSF026G04+                                            GGGGATGGAGCTGGCTAGAGCGATGG
                      ____________________________________________________________
consensus             TCTTTCAAGAGCTGCAACTTGGACAAGAACAGCTGGGGATGGAGCTGGCTAGAGCGATGG
 
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JMSF026G04-           ATGGCTGCGAGGCCTTGGGAGAACCGATTGATGGAGCAGAGGCAAACCGAAGCAACAGAA
rJMSF026G04+          ATGGCTGCGAGGCCTTGGGAGAACCGATTGATGGAGCAGAGGCAAACCGAAGCAACAGAA
                      ____________________________________________________________
consensus             ATGGCTGCGAGGCCTTGGGAGAACCGATTGATGGAGCAGAGGCAAACCGAAGCAACAGAA
 
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JMSF026G04-           ACGACCCCGAAGTCCAAGGTTTGCTTAGATTACACCAAGGACAACCGTTCCAAGTCTTCT
rJMSF026G04+          ACGACCCCGAAGTCCAAGGTTTGCTTAGATTACACCAAGGACAACCGTTCCAAGTCTTCT
                      ____________________________________________________________
consensus             ACGACCCCGAAGTCCAAGGTTTGCTTAGATTACACCAAGGACAACCGTTCCAAGTCTTCT
 
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JMSF026G04-           GAGCAGTGCTCGGTGAAAGTCAGAAAGAACAATGTGACCAAAAGGGTGTCAGCAAAACCT
rJMSF026G04+          GAGCAGTGCTCGGTGAAAGTCAGAAAGAACAATGTGACCAAAAGGGTGTCAGCAAAACCT
                      ____________________________________________________________
consensus             GAGCAGTGCTCGGTGAAAGTCAGAAAGAACAATGTGACCAAAAGGGTGTCAGCAAAACCT
 
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JMSF026G04-           CCCTTGGTTGGACAAGCCACTCGTTCCTCCTCGAGCCCGAGTTCTGAGTTTCGATACGAC
rJMSF026G04+          CCCTTGGTTGGACAAGCCACTCGTTCCTCCTCGAGCCCGAGTTCTGAGTTTCGATACGAC
                      ____________________________________________________________
consensus             CCCTTGGTTGGACAAGCCACTCGTTCCTCCTCGAGCCCGAGTTCTGAGTTTCGATACGAC
 
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JMSF026G04-           GAGAGTTCTGCTTCGTCCTCGCTCTGCACATCCACGACTCCNGTTTCAGGACACTCGGTG
rJMSF026G04+          GAGAGTTCTGCTTCGTCCTCGCTCTGCACATCCACGACTCCAGTTTCAGGACACTCGGTG
                      ____________________________________________________________
consensus             GAGAGTTCTGCTTCGTCCTCGCTCTGCACATCCACGACTCCAGTTTCAGGACACTCGGTG
 
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JMSF026G04-           TCAGCATCAGATAAAACAGTCGAGAAATGCAACAATTGTAGGCCAAACTATATGAACTTG
rJMSF026G04+          TCAGCATCAGATAAAACAGTCGAGAAATGCAACAATTGTAGGCCAAACTATATGAACTTG
                      ____________________________________________________________
consensus             TCAGCATCAGATAAAACAGTCGAGAAATGCAACAATTGTAGGCCAAACTATATGAACTTG
 
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JMSF026G04-           ACCCAATCGACGAAGGCCAAGCAGCGAAATAGCAGGTTTCTAAGACAGTCCATGGACGAG
rJMSF026G04+          ACCCAATCGACGAAGGCCAAGCAGCGAAATAGCAGGTTTCTAAGACAGTCCATGGACGAG
                      ____________________________________________________________
consensus             ACCCAATCGACGAAGGCCAAGCAGCGAAATAGCAGGTTTCTAAGACAGTCCATGGACGAG
 
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JMSF026G04-           TTTCAGTTTCT                                                 
rJMSF026G04+          TTTCAGTTTCTTAACCTTCAGAAGTCGGGGGCATTTAGCAACGGGGACTCCAAAAGCACT
                      ____________________________________________________________
consensus             TTTCAGTTTCTTAACCTTCAGAAGTCGGGGGCATTTAGCAACGGGGACTCCAAAAGCACT
 
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rJMSF026G04+          GCAGCTTCTGATCTTTCGTCGGTGAACTTGACAAGGCCCCTTTGCCTACCTACCCGAATG
                      ____________________________________________________________
consensus             GCAGCTTCTGATCTTTCGTCGGTGAACTTGACAAGGCCCCTTTGCCTACCTACCCGAATG
 
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rJMSF026G04+          GATAAATTCTCGAAGTGAAGGGATAAGGAGAAACAATTCTTTGTTGTTGTCTCTCAAATG
                      ____________________________________________________________
consensus             GATAAATTCTCGAAGTGAAGGGATAAGGAGAAACAATTCTTTGTTGTTGTCTCTCAAATG
 
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rJMSF026G04+          CTTTTGAGACCCTGGATGCAAATCTTTTGAGACATTGGAAATGTGCACTAGGATTTTTCA
                      ____________________________________________________________
consensus             CTTTTGAGACCCTGGATGCAAATCTTTTGAGACATTGGAAATGTGCACTAGGATTTTTCA
 
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rJMSF026G04+          TCTTGTAAAATTGTGTAAGTTATGAGTTTCAAGTGGATCATCACTATGGTCCACTTTTAT
                      ____________________________________________________________
consensus             TCTTGTAAAATTGTGTAAGTTATGAGTTTCAAGTGGATCATCACTATGGTCCACTTTTAT