| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP016F01 | Sequence | 238 | 011334 (5) | ||||||||
| JMFF017B10 | Sequence | 558 | 003701 (4) | ref|XP_009790731.1| | 4e-99 | PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Nicotiana sylvestri | 811 | 011334 (5) | ref|XP_009799582.1| | 2e-134 | PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform X2 [Nicotiana syl |
| JMFF027P06 | Sequence | 457 | 003701 (4) | ref|XP_009790731.1| | 5e-76 | PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Nicotiana sylvestri | 795 | 011334 (5) | ref|XP_009799582.1| | 2e-130 | PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform X2 [Nicotiana syl |
| JMFN006C07 | Sequence | 561 | 011334 (5) | ref|XP_004142973.1| | 1e-76 | PREDICTED: ATP-citrate synthase alpha chain protein 1-like [Cucumis sativus] gb | |||||
| JMSF026D16 | Sequence | 695 | 003701 (4) | ref|XP_009790731.1| | 1e-128 | PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Nicotiana sylvestri | 776 | 011334 (5) | ref|XP_009799575.1| | 1e-85 | PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform X1 [Nicotiana syl |
This contig is upended
. : . : . : . : . : . :
rJMFF017B10+ GGACATGAGGGGGGA
____________________________________________________________
consensus GGACATGAGGGGGGA
. : . : . : . : . : . :
rJMFF027P06+ ACTCGATGACACTGCTGCTTTTAAGAACTTTAAGAAGTGGGGAGATATTGAATTCCCGTT
rJMFF017B10+ ACTCGATGACACTGCTGCTTTTAAGAACTTTAAGAAGTGGGGAGATATTGAATTCCCGTT
____________________________________________________________
consensus ACTCGATGACACTGCTGCTTTTAAGAACTTTAAGAAGTGGGGAGATATTGAATTCCCGTT
. : . : . : . : . : . :
rJMFF027P06+ GCCATTTGGAAGGGTCATGAGCGCTACAGAAAGCTTTATCCATGGGCTGGATGAGAAGAC
rJMFF017B10+ GCCATTTGGAAGGGTCATGAGCGCTACAGAAAGCTTTATCCATGGGCTGGATGAGAAGAC
rJMSF026D16+ GGAAGGGTCATGAGCGCTACAGAAAGCTTTATCCATGGGCTGGATGAGAAGAC
____________________________________________________________
consensus GCCATTTGGAAGGGTCATGAGCGCTACAGAAAGCTTTATCCATGGGCTGGATGAGAAGAC
. : . : . : . : . : . :
rJMFF027P06+ AAGTGCATCTTTGAAGTTCACGGTCTTGAACCCAAAGGGACGAATCTGGACCATGGTGGC
rJMFF017B10+ AAGTGCATCTTTGAAGTTCACGGTCTTGAACCCAAAGGGACGAATCTGGACCATGGTGGC
rJMSF026D16+ AAGTGCATCTTTGAAGTTCACGGTCTTGAACCCAAAGGGACGAATCTGGACCATGGTGGC
____________________________________________________________
consensus AAGTGCATCTTTGAAGTTCACGGTCTTGAACCCAAAGGGACGAATCTGGACCATGGTGGC
. : . : . : . : . : . :
rJMFF027P06+ TGGTGGAGGTGCCAGTGTCATCTATGCCGATACTGTTGGAGACCTTGGATATGCATCTGA
JMFN006C07- CCGATACTGTTGGAGACCTTGGATATGCATCTGA
rJMFF017B10+ TGGTGGAGGTGCCAGTGTCATCTATGCCGATACTGTTGGAGACCTTGGATATGCATCTGA
rJMSF026D16+ TGGTGGAGGTGCCAGTGTCATCTATGCCGATACTGTTGGAGACCTTGGATATGCATCT-A
____________________________________________________________
consensus TGGTGGAGGTGCCAGTGTCATCTATGCCGATACTGTTGGAGACCTTGGATATGCATCTGA
. : . : . : . : . : . :
rJMFF027P06+ ACTCGGGAACTATGCTGAATATAGCGGGGCTCCTAATGAAGAAGAGGTCCTGCAGTATGC
JMFN006C07- ACTCGGGAACTATGCTGAATATAGCGGGGCTCCTAATGAAGAAGAGGTCCTGCAGTATGC
rJMFF017B10+ ACTCGGGAACTATGCTGAATATAGCGGGGCTCCTAATGAAGAAGAGGTCCTGCAGTATGC
rJMSF026D16+ ACTCGGGAACTATGCTGAATATAGCGGGGCTCCTAATGAAGAAGAGGTCCTGCAGTATGC
____________________________________________________________
consensus ACTCGGGAACTATGCTGAATATAGCGGGGCTCCTAATGAAGAAGAGGTCCTGCAGTATGC
. : . : . : . : . : . :
rJMFF027P06+ CAGAGTCGTTATTGATTGTGCAACTGCAGACCCTGATGGTCGTAAAAGAGCTCTCGTGAT
JMFN006C07- CAGAGTCGTTATTGATTGTGCAACTGCAGACCCTGATGGTCGTAAAAGAGCTCTCGTGAT
rJMFF017B10+ CAGAGTCGTTATTGATTGTGCAACTGCAGACCCTGATGGTCGTAAAAGAGCTCTCGTGAT
rJMSF026D16+ CAGAGTCGTTATTGATTGTGCAACTGCAGACCCTGATGGTCGTAAAAGAGCTCTCGTGAT
____________________________________________________________
consensus CAGAGTCGTTATTGATTGTGCAACTGCAGACCCTGATGGTCGTAAAAGAGCTCTCGTGAT
. : . : . : . : . : . :
rJMFF027P06+ TGGTGGTGGTATAGCAAACTTTACTGACGTTGCTGCTACATTTAATGGCATAATCCGAGC
JMFN006C07- TGGTGGTGGTATAGCAAACTTTACTGACGTTGCTGCTACATTTAATGGCATAATCCGAGC
rJMFF017B10+ TGGTGGTGGTATAGCAAACTTTACTGACGTTGCTGCTACATTTAATGGCATAATCCGAGC
rJMSF026D16+ TGGTGGTGGTATAGCAAACTTTACTGACGTTGCTGCTACATTTAATGGCATAATCCGAGC
____________________________________________________________
consensus TGGTGGTGGTATAGCAAACTTTACTGACGTTGCTGCTACATTTAATGGCATAATCCGAGC
. : . : . : . : . : . :
rJMFF027P06+ TTTGAAGGAGAAGGAATCGAAGCTCAAGGCTGCTAGAATGAGTATCTTTGTAAGGAGAGG
JMFN006C07- TTTGAAGGAGAAGGAATCGAAGCTCAAGGCTGCTAGAATGAGTATCTTTGTAAGGAGAGG
rJMFF017B10+ TTTGAAGGAGAAGGAATCGAAGCTCAAGGCTGCTAGAATGAGTATCTTTGTAAGGAGAGG
rJMSF026D16+ TTTGAAGGAGAAGGAATCGAAGCTCAAGGCTGCTAGAATGGGTATCTTTGTAAGGAGAGG
____________________________________________________________
consensus TTTGAAGGAGAAGGAATCGAAGCTCAAGGCTGCTAGAATGAGTATCTTTGTAAGGAGAGG
. : . : . : . : . : . :
rJMFF027P06+ CGGTCCGAACTACCAAAGGGGTCTTGCTAAGATGAGAGCTCTTGGAGAGGAAATCGGCAT
JMFN006C07- CGGTCCGAACTACCAAAGGGGTCTTGCTAAGATGAGAGCTCTTGGAGAGGAAATCGGCAT
rJMFF017B10+ CGGTCCGAACTACCAAAGGGGTCTTGCTAAGATGAGAGCTCTTGGAGAGGAAATCGGCAT
rJMSF026D16+ CGGTCCGAACTACCAAAGGGGTCTTGCTAAGATGAGAGCTCTTGGAGAGGAAATCGGCAT
____________________________________________________________
consensus CGGTCCGAACTACCAAAGGGGTCTTGCTAAGATGAGAGCTCTTGGAGAGGAAATCGGCAT
. : . : . : . : . : . :
rJMFF027P06+ CCCCATTGAGGTCTACGGCCCGGAGGCAACCATGACAGGCATTTGCAAGCAGGCAATTGA
JMFN006C07- CCCCATTGAGGTCTACGGCCCGGAGGCAACCATGACAGGCATTTGCAAGCAGGCAATTGA
rJMFF017B10+ CCCCATTGAGGTCTACGGCCCGGAGGCAACCATGACAGGCATTTGCAAGCAGGCAATTGA
rJMCP016F01- AGGCAACCATGACAGGCATTTGCAAGCAGGCAATTGA
rJMSF026D16+ CCCCATTGAGGTCTACGGCCCGGAGGCAACCATGACAGGCATTTGCAAGCAGGCAATTGA
____________________________________________________________
consensus CCCCATTGAGGTCTACGGCCCGGAGGCAACCATGACAGGCATTTGCAAGCAGGCAATTGA
. : . : . : . : . : . :
rJMFF027P06+ ATGCATCACTGCAGCTGCATAAAGAGCAAAGCAACTAATGCAACTCTGATTTCTATTTTA
JMFN006C07- ATGCATCACTGCAGCTGCATAAAGAGCAAAGCAACTAATGCAACTCTGATTTCTATTTTA
rJMFF017B10+ ATGCATCACTGCAGCTGCATAAAGAGCAAAGCAACTAATGCAACTCTGATTTCTATTTTA
rJMCP016F01- ATGCATCACTGCAGCTGCATAAAGAGCAAAGCAACTAATGCAACTCTGATTTCTATTTTA
rJMSF026D16+ ATGCATCACTGCAGCTGCATAAAGAGCAAAGCAACTAATGCAACTCTGATTTCTATTTTA
____________________________________________________________
consensus ATGCATCACTGCAGCTGCATAAAGAGCAAAGCAACTAATGCAACTCTGATTTCTATTTTA
. : . : . : . : . : . :
rJMFF027P06+ TTCACTTCCTTCCTTTTTGGTTGTGTTTAGATGTCTGTTATAGCAATGTTGTGCCTCTTT
JMFN006C07- TTCACTTCCTTCCTTTTTGGTTGTGTTTAGATGTCTGTTATAGCAATGTTGTGCCTCTTT
rJMFF017B10+ TTCACTTCCTTCCTTTTTGGTTGTGTTTAGATGTCTGTTATAGCAATGTTGTGCCTCTTT
rJMCP016F01- TTCACTTCCTTCCTTTTTGGTTGTGTTTAGATGTCTGTTATAGCAATGTTGTGCCTCTTT
rJMSF026D16+ TTCACTTCCTTCCTTTTTGGTTGTGTTTAGATGTCTGTTATAGCAATGTTGTGCCTCTTT
____________________________________________________________
consensus TTCACTTCCTTCCTTTTTGGTTGTGTTTAGATGTCTGTTATAGCAATGTTGTGCCTCTTT
. : . : . : . : . : . :
rJMFF027P06+ TGTTTGTATTTTTGACATTTCCATATAAATGGCCCATTTGAATTGGGCTCGAGCTGCAGC
JMFN006C07- TGTTTGTATTTTTGACATTTCCATATAAATGGCCCATTTGAATTGGG
rJMFF017B10+ TGTTTGTATTTTTGACATTTCCATATAAATGGCCCATTTGAATTGGGCTCGAGCTGCAGC
rJMCP016F01- TGTTTGTATTTTTGACATTTCCATATAAATGGCCCATTTGAATTGGGCTCGAGCTGCAGC
rJMSF026D16+ TGTTTGTATTTTTGACATTTCCATATAAATGGCCCATTTGAATTGGGCTCGAGCTGCAGC
____________________________________________________________
consensus TGTTTGTATTTTTGACATTTCCATATAAATGGCCCATTTGAATTGGGCTCGAGCTGCAGC
. : . : . : . : . : . :
rJMFF027P06+ TATGAATCAATCACT
rJMFF017B10+ TATGAATCAATCACT
rJMCP016F01- TATGAATCAATCACT
rJMSF026D16+ TATGAATCAATCACTTCCTTTATTTTGTGGGATTTTTCTTCTTTAATAACTTTGTAGCAT
____________________________________________________________
consensus TATGAATCAATCACTTCCTTTATTTTGTGGGATTTTTCTTCTTTAATAACTTTGTAGCAT