| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002G09 | Sequence | 516 | 004475 (4) | ref|XP_009594017.1| | 5e-12 | PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis] | 760 | 011331 (5) | ref|XP_011017101.1| | 7e-117 | PREDICTED: probable protein phosphatase 2C 38 isoform X4 [Populus euphratica] |
| JMFF005L06 | Sequence | 494 | 011331 (5) | gb|KHG13638.1| | 3e-48 | hypothetical protein F383_18928 [Gossypium arboreum] | |||||
| JMFF008C17 | Sequence | 515 | 004475 (4) | ref|XP_009594017.1| | 8e-11 | PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis] | 761 | 011331 (5) | ref|XP_011017101.1| | 8e-138 | PREDICTED: probable protein phosphatase 2C 38 isoform X4 [Populus euphratica] |
| JMFF040B19 | Sequence | 437 | 004475 (4) | ref|XP_009594017.1| | 1e-17 | PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis] | 190 | 011331 (5) | ref|XP_011016941.1| | 8e-08 | PREDICTED: probable protein phosphatase 2C 38 isoform X2 [Populus euphratica] |
| JMSF025I04 | Sequence | 647 | 004475 (4) | ref|XP_009594017.1| | 2e-37 | PREDICTED: probable protein phosphatase 2C 38 [Nicotiana tomentosiformis] | 788 | 011331 (5) | ref|XP_011017101.1| | 6e-143 | PREDICTED: probable protein phosphatase 2C 38 isoform X4 [Populus euphratica] |
This contig is upended
. : . : . : . : . : . :
rJMSF025I04+ GTGAGAAAG
____________________________________________________________
consensus GTGAGAAAG
. : . : . : . : . : . :
rJMFF002G09+ TCAAATTGCTTCTGTGGGATCATGTTGTTTGGTTGGCATTGTA
rJMFF008C17+ TCAAATTGCTTCTGTGGGATCATGTTGTTTGGTTGGCATTGTA
rJMSF025I04+ CAGTGGTTAATGAAACCTCAAATTGCTTCTGTGGGATCATGTTGTTTGGTTGGCATTGTA
____________________________________________________________
consensus CAGTGGTTAATGAAACCTCAAATTGCTTCTGTGGGATCATGTTGTTTGGTTGGCATTGTA
. : . : . : . : . : . :
rJMFF002G09+ TGCAATGGTATGCTGTATATTGCGAATGCTGGGGATTCCACGTGCGGTTTTAGGAAGAGT
rJMFF008C17+ TGCAATGGTATGCTGTATATTGCGAATGCTGGGGATT-CACGTGCGGTTTTAGGAAGAGT
rJMSF025I04+ TGCAATGGTATGCTGTATATTGCGAATGCTGGGGATT-CACGTGCGGTTTTAGGAAGAGT
____________________________________________________________
consensus TGCAATGGTATGCTGTATATTGCGAATGCTGGGGATT-CACGTGCGGTTTTAGGAAGAGT
. : . : . : . : . : . :
rJMFF002G09+ TGAGAAGCATCTGAAAGATGTTAAAGCTATACAGTTGTCATACGAACACAATGCAAATTT
rJMFF008C17+ TGAGAAGCATCTGAAAGATGTTAAAGCTATACAGTTGTCATACGAACACAATGCAAATTT
rJMSF025I04+ TGAGAAGCATCTGAAAGATGTTAAAGCTATACAGTTGTCATACGAACACAATGCAAATTT
____________________________________________________________
consensus TGAGAAGCATCTGAAAGATGTTAAAGCTATACAGTTGTCATACGAACACAATGCAAATTT
. : . : . : . : . : . :
rJMFF002G09+ GGAATCTGTTAGGGAGGAACTTAAGTCGTTGCATCCCGATGATCCACAGATTGTAGTTCT
rJMFF008C17+ GGAATCTGTTAGGGAGGAACTTAAGTCGTTGCATCCCGATGATCCACAGATTGTAGTTCT
rJMSF025I04+ GGAATCTGTTAGGGAGGAACTTAAGTCGTTGCATCCCGATGATCCACAGATTGTAGTTCT
____________________________________________________________
consensus GGAATCTGTTAGGGAGGAACTTAAGTCGTTGCATCCCGATGATCCACAGATTGTAGTTCT
. : . : . : . : . : . :
rJMFF002G09+ AAAGCACAAGGTTTGGCGTGTCAAGGGACTTATACAGATTTCAAGATCCATTGGCGATGC
rJMFF005L06+ CAGATTTCAAGATCCATTGGCGATGC
rJMFF008C17+ AAAGCACAAGGTTTGGCGTGTCAAGGGACTTATACAGATTTCAAGATCCATTGGCGATGC
rJMSF025I04+ AAAGCACAAGGTTTGGCGTGTCAAGGGACTTATACAGATTTCAAGATCCATTGGCGATGC
____________________________________________________________
consensus AAAGCACAAGGTTTGGCGTGTCAAGGGACTTATACAGATTTCAAGATCCATTGGCGATGC
. : . : . : . : . : . :
rJMFF002G09+ ATATTTCAAGAGACCGGAGTTTAATAGGGAGCCTTTGTTGCCTAAGTTTAGACTAGACGA
rJMFF005L06+ ATATTTCAAGAGACCGGAGTTTAATAGGGAGCCTTTGTTGCCTAAGTNTAGACTAGANGA
rJMFF008C17+ ATATTTCAAGAGACCGGAGTTTAATAGGGAGCCTTTGTTGCCTAAGTTTAGACTAGACGA
rJMSF025I04+ ATATTTCAAGAGACCGGAGTTTAATAGGGAGCCTTTGTTGCCTAAGTTTAGACTAGACGA
____________________________________________________________
consensus ATATTTCAAGAGACCGGAGTTTAATAGGGAGCCTTTGTTGCCTAAGTTTAGACTAGACGA
. : . : . : . : . : . :
rJMFF002G09+ ACCCTTTGAGACACCAATCCTTAAAGCTGAGCCATCGATACATGTTCAAAAACTCCTCCC
rJMFF005L06+ ACCCTTTGAGACACCAATCCTTAAAGNTGAGCCATCGATACATGTTCAAAAACTCCTCCC
rJMFF008C17+ ACCCTTTGAGACACCAATCCTTAAAGCTGAGCCATCGATACATGTTCAAAAACTCCTCCC
rJMSF025I04+ ACCCTTTGAGACACCAATCCTTAAAGCTGAGCCATCGATACATGTTCAAAAACTCCTCCC
____________________________________________________________
consensus ACCCTTTGAGACACCAATCCTTAAAGCTGAGCCATCGATACATGTTCAAAAACTCCTCCC
. : . : . : . : . : . :
rJMFF002G09+ TGAAGATCACTTTCTTATCTTTGCATCGGATGGCTTATGGGAGCATCTTAGCAACCAAGA
rJMFF005L06+ TGAAGATCACTTTCTTATCTTTGCATCGGATGGCTTATGGGAGCATCTTAGCAACCAAGA
rJMFF008C17+ TGAAGATCACTTTCTTATCTTTGCATCGGATGGCTTATGGGAGCATCTTAGCAACCAAGA
rJMSF025I04+ TGAAGATCACTTTCTTATCTTTGCATCGGATGGCTTATGGGAGCATCTTAGCAACCAAGA
____________________________________________________________
consensus TGAAGATCACTTTCTTATCTTTGCATCGGATGGCTTATGGGAGCATCTTAGCAACCAAGA
. : . : . : . : . : . :
rJMFF002G09+ GGCGGTTGAAATTGTCAACACCTGCCCCCGCAATGGTGTTGCCAGGAAACTTATAAAAGC
rJMFF005L06+ GGCGGTTGAAATTGTCAACACNTGCCCCCGCAATGGTGTTGCCAGGAAACTTATAAAAGC
rJMFF008C17+ GGCGGTTGAAATTGTCAACACCTGCCCCCGCAATGGTGTTGCCAGGAAACTTATAAAAGC
rJMSF025I04+ GGCGGTTGAAATTGTCAACACCTGCCCCCGCAATGGTGTTGCCAGGAAACTTATAAAAGC
____________________________________________________________
consensus GGCGGTTGAAATTGTCAACACCTGCCCCCGCAATGGTGTTGCCAGGAAACTTATAAAAGC
. : . : . : . : . : . :
rJMFF002G09+ TGCACTTCATGAAGCTGCAAAGAAAAGAGAAATGAGGTACGCGGACTTGAAAAAGATAGA
rJMFF005L06+ TGCACTTCATGAAGCTGCAAAGAAAAGAGAAATGAGGTACGCGGACTTGAAAAAGATAGA
rJMFF008C17+ TGCACTTCATGAAGCTGCAAAGAAAAGAGAAATGAGGTACGCGGACTTGAAAAAGATAGA
rJMFF040B19+ GAAAAAGATAGA
rJMSF025I04+ TGCACTTCATGAAGCTGCAAAGAAAAGAGAAATGAGGTACGCGGACTTGAAAAAGATAGA
____________________________________________________________
consensus TGCACTTCATGAAGCTGCAAAGAAAAGAGAAATGAGGTACGCGGACTTGAAAAAGATAGA
. : . : . : . : . : . :
rJMFF002G09+ CCGGGGCGTGAGAAGACACTTCCACGATGACATCACTGTCATCGTTTTGTTCCTAGACTC
rJMFF005L06+ CCGGGG
rJMFF008C17+ CCGGGGCGTGAGAAGACACTTCCACGATGACATCACTGTCATCGTTTTGTTCCTAGACTC
rJMFF040B19+ CCGGGGCGTGAGAAGACACTTCCGCGATGACATCACTGTCATNGTNNNGNTCCTAGNCTC
rJMSF025I04+ CCGGGGCGTGAGAAGACACTTCCACGATGACATCACTGTCATCGTTTTGTTCCTAGACTC
____________________________________________________________
consensus CCGGGGCGTGAGAAGACACTTCCACGATGACATCACTGTCATCGTTTTGTTCCTAGACTC
. : . : . : . : . : . :
rJMFF002G09+ CAATTTAATTAGTCGTGGTTCCTCCAGTGGGCAAGTGCTTTCCATAAAAGGAGGTGGAGG
rJMFF008C17+ CAATTTAATTAGTCGTGGTTCCTCCAGTGGGCAAGTGCTTTCCATAAAAGGAGGTGGAGG
rJMFF040B19+ CAATTTAATTAGTCGTGGTTCCTCCAGTGGGCAAGTGCTTTCCATAAAAGGAGGTGGAGG
rJMSF025I04+ CAATTTAATTAGTCGTGGTTCCTCCAGTGGGCAAGTGCTTTCCATAAAAGGAGGTGGAGG
____________________________________________________________
consensus CAATTTAATTAGTCGTGGTTCCTCCAGTGGGCAAGTGCTTTCCATAAAAGGAGGTGGAGG
. : . : . : . : . : . :
rJMFF002G09+ TACTTCTTCATAGAATAAAAATCTCATCATGCATACTTTATCCCTTGATCGCAAA
rJMFF008C17+ TACTTCTTCATAGAATAAAAATCTCATCATGCATACTTTATCCCTTGATCGCAAA
rJMFF040B19+ TACTTCTTCATAGAATAAAAATCTCATCATGCATACTTTATCCCTNGATCGCAAA
rJMSF025I04+ TACTTCTTCATAGAATAAAAATCTCATCATGCATACTTTATCCCTTGATCGCAAATTGTC
____________________________________________________________
consensus TACTTCTTCATAGAATAAAAATCTCATCATGCATACTTTATCCCTTGATCGCAAATTGTC