Contig 011330:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024N19Sequence429012884 (2)ref|XP_009780449.1|2e-29PREDICTED: mitochondrial inner membrane protein OXA1-like [Nicotiana sylvestris615011330 (2)ref|XP_011101043.1|1e-23PREDICTED: mitochondrial inner membrane protein OXA1-like [Sesamum indicum]
JMSF024P09Sequence697012884 (2)ref|XP_009621900.1|9e-53PREDICTED: mitochondrial inner membrane protein OXA1-like [Nicotiana tomentosif787011330 (2)ref|XP_011101043.1|2e-49PREDICTED: mitochondrial inner membrane protein OXA1-like [Sesamum indicum]

Alignment

This contig is upended


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rJMSF024P09+                                                               TTGACTA
                      ____________________________________________________________
consensus                                                                  TTGACTA
 
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rJMSF024P09+          CTCCTGACAGCATGTATATTCTTCCAGTTTTAACAGCATTGACATTCTTGATTACAGTTG
                      ____________________________________________________________
consensus             CTCCTGACAGCATGTATATTCTTCCAGTTTTAACAGCATTGACATTCTTGATTACAGTTG
 
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rJMSF024P09+          AGTTTAATGCACAGGAAGGATNGGAAGGAAATCCTGCTGGTCCCACCATTAAGAAAGTTT
                      ____________________________________________________________
consensus             AGTTTAATGCACAGGAAGGATNGGAAGGAAATCCTGCTGGTCCCACCATTAAGAAAGTTT
 
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rJMFF024N19+                      CTCTACTGACTGTCCCATTGACCGCTTCCTTCCCAAAGGCTATATTCA
rJMSF024P09+          CAAGAATCTTTGCTCTACTGACTGTCCCATTGACCGCTTCCTTCCCAAAGGCTATATTCA
                      ____________________________________________________________
consensus             CAAGAATCTTTGCTCTACTGACTGTCCCATTGACCGCTTCCTTCCCAAAGGCTATATTCA
 
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rJMFF024N19+          TGTACTGGATTACCTCCAATCTTTTCTCCCTAACTTATGGAATGGTACTTAAAAAGCCGG
rJMSF024P09+          TGTACTGGATTACCTCCAATCTTTTCTCCCTAACTTATGGAATGGTACTTAAAAAGCCGG
                      ____________________________________________________________
consensus             TGTACTGGATTACCTCCAATCTTTTCTCCCTAACTTATGGAATGGTACTTAAAAAGCCGG
 
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rJMFF024N19+          AAATGAAGAAGCTCTTGGGTATACCTATAATCCCGGTGGCACCACCATCTCCTGCCAGTC
rJMSF024P09+          AAATGAAGAAGCTCTTGGGTATACCTATAATCCCGGTGGCACCACCATCTCCTGCCAGTC
                      ____________________________________________________________
consensus             AAATGAAGAAGCTCTTGGGTATACCTATAATCCCGGTGGCACCACCATCTCCTGCCAGTC
 
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rJMFF024N19+          AAAAACCCGGATTCTCTTTTTTCGAAGCGTTAAACAAGTATTCTGCAGCACAACAACAGG
rJMSF024P09+          AAAAACCCGGATTCTCTTTTTTCGAAGCGTTAAACAAGTATTCTGCAGCACAACAACAGG
                      ____________________________________________________________
consensus             AAAAACCCGGATTCTCTTTTTTCGAAGCGTTAAACAAGTATTCTGCAGCACAACAACAGG
 
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rJMFF024N19+          CTCAATCGGCATCAACTAATGAAACATCCATACCTACAAACCAAAGAGTGCCACCATCCT
rJMSF024P09+          CTCAATCGGCATCAACTAATGAAACATCCATACCTACAAACCAAAGAGTGCCACCATCCT
                      ____________________________________________________________
consensus             CTCAATCGGCATCAACTAATGAAACATCCATACCTACAAACCAAAGAGTGCCACCATCCT
 
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rJMFF024N19+          CGGTTCTCAGTCAAAGGATCAGAAGCTTAGAGAAACAAGTTAAAGAAAAGAAGAAAGGCG
rJMSF024P09+          CGGTTCTCAGTCAAAGGATCAGAAGCTTAGAGAAACAAGTTAAAGAAAAGAAGAAAGGCG
                      ____________________________________________________________
consensus             CGGTTCTCAGTCAAAGGATCAGAAGCTTAGAGAAACAAGTTAAAGAAAAGAAGAAAGGCG
 
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rJMFF024N19+          GCAAGAAGAGGTGATGAACACCAAACTCGGACAAATTTACAATATCACTATTGTCTTCTC
rJMSF024P09+          GCAAGAAGAGGTGATGAACACCAAACTCGGACAAATTTACAATATCACTATTGTCTTCTC
                      ____________________________________________________________
consensus             GCAAGAAGAGGTGATGAACACCAAACTCGGACAAATTTACAATATCACTATTGTCTTCTC
 
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rJMFF024N19+          CTTAAAATTCATTTACAAATAATGTTCACCACTTCATCCATTAAAATGTCCATAATAATT
rJMSF024P09+          CTTAAAATTCATTTACAAATAATGTTCACCACTTCATCCATTAAAATGTCCATAATAATT
                      ____________________________________________________________
consensus             CTTAAAATTCATTTACAAATAATGTTCACCACTTCATCCATTAAAATGTCCATAATAATT
 
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rJMFF024N19+          GGATAATGATAGGGAGGAATTTCCGAGATTTTGACAATTTTGTAGTTTTGTTCCCCGCGA
rJMSF024P09+          GGATAATGATAGGGAGGAATTTCCGAGATTTTGACAATTTTGTAGTTTTGTTCCCCGCGA
                      ____________________________________________________________
consensus             GGATAATGATAGGGAGGAATTTCCGAGATTTTGACAATTTTGTAGTTTTGTTCCCCGCGA
 
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rJMFF024N19+          CCGCGAGTGATGGCCTAAGGGGGCTTCTTTTTATCCTTATATGTAGTCATGTAGACCTCA
rJMSF024P09+          CCGCGAGTGATGGCCTAAGGGGGCTTCTTTTTATCCTTATATGTAGTCATGTAGACCTCA
                      ____________________________________________________________
consensus             CCGCGAGTGATGGCCTAAGGGGGCTTCTTTTTATCCTTATATGTAGTCATGTAGACCTCA
 
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rJMFF024N19+          GCCATAACAATATAGTGA                                          
rJMSF024P09+          GCCATAACAATATAGTGATGGTAGGAAATTATTGTTGTTTTTATACATCTGTGGTCCTTT
                      ____________________________________________________________
consensus             GCCATAACAATATAGTGATGGTAGGAAATTATTGTTGTTTTTATACATCTGTGGTCCTTT