Contig 011329:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024L19Sequence682011329 (2)gb|EYU25689.1|2e-97hypothetical protein MIMGU_mgv1a009711mg [Erythranthe guttata]748011329 (2)ref|XP_009626440.1|120PREDICTED: uncharacterized protein LOC104117142 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-                                 GTAAATAAGCAATAGCGAAACTTAGCGCGTGCGGCGAG
                      ____________________________________________________________
consensus                                   GTAAATAAGCAATAGCGAAACTTAGCGCGTGCGGCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-           TAAACGACGGCGAAGCAGGTGGCTGCGAATCTGCGGCACAGACTACTCCGGCGGAGCAAT
                      ____________________________________________________________
consensus             TAAACGACGGCGAAGCAGGTGGCTGCGAATCTGCGGCACAGACTACTCCGGCGGAGCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-           GGTCGGAGTTCTCTCTCATAAGATCCAAAAAGATCAACTGAATCCGGGGGATCACGTTTA
                      ____________________________________________________________
consensus             GGTCGGAGTTCTCTCTCATAAGATCCAAAAAGATCAACTGAATCCGGGGGATCACGTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-           CTCATGGAGGCACAACTATCTCTATGCTCATCACGGGATATATGTTGGTGATGGAAAGGT
                      ____________________________________________________________
consensus             CTCATGGAGGCACAACTATCTCTATGCTCATCACGGGATATATGTTGGTGATGGAAAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-           TATTCATTTCACACGGGCTGCAGGTCATGAGATTGGAACAGGAACTGTCTTAGACAGCTT
                      ____________________________________________________________
consensus             TATTCATTTCACACGGGCTGCAGGTCATGAGATTGGAACAGGAACTGTCTTAGACAGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-           TCTTTTCAGCTCTTCACCTGTGGAGCCCTTAGACCCCCCATGCCCAAGATGTGGTGATCA
                      ____________________________________________________________
consensus             TCTTTTCAGCTCTTCACCTGTGGAGCCCTTAGACCCCCCATGCCCAAGATGTGGTGATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-           ATCAGTGACTGAAGGTGTAATCGTATCCTGCCTTGAATGTTTTCTTTATGGTGGGGAACT
                      ____________________________________________________________
consensus             ATCAGTGACTGAAGGTGTAATCGTATCCTGCCTTGAATGTTTTCTTTATGGTGGGGAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-           CTATATTTTTCAGTACGGTGTTTCTCCAGCTTTTTTTCTTGCCAAAGTTCGAGGAGGAAC
                      ____________________________________________________________
consensus             CTATATTTTTCAGTACGGTGTTTCTCCAGCTTTTTTTCTTGCCAAAGTTCGAGGAGGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-           GTGCTCACTTGCCCGGTCTGATCCAATGGAGCAGGTACTTCATCGAGCTGAATATCTGCT
                      ____________________________________________________________
consensus             GTGCTCACTTGCCCGGTCTGATCCAATGGAGCAGGTACTTCATCGAGCTGAATATCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-           TCAGAATGGTTTTGGGGTTTACAACCTGTTTAAGAACAACTGTGAGGATTTCGCAATCTA
rJMSF024L19+                                          AGAACAACTGTGAGGATTTCGCAATCTA
                      ____________________________________________________________
consensus             TCAGAATGGTTTTGGGGTTTACAACCTGTTTAAGAACAACTGTGAGGATTTCGCAATCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-           CTGCAAGACTGGTTTGCTTGTCTATACAGATCTAAGTGTAGGCCGGAGTGGACAGGCAGC
rJMSF024L19+          CTGCAAGACTGGTTTGCTTGTCTATACAGATCTAAGTGTAGGCCGGAGTGGACAGGCAGC
                      ____________________________________________________________
consensus             CTGCAAGACTGGTTTGCTTGTCTATACAGATCTAAGTGTAGGCCGGAGTGGACAGGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024L19-           TTCCGTTTTAGCAGCTGTGAGTGTAATCGCCTCATCACCGCTTC                
rJMSF024L19+          TTCCGTTTTAGCAGCTGTGAGTGTAATCGCCTCATCACCGCTTCGTTTCTTGACTACCGG
                      ____________________________________________________________
consensus             TTCCGTTTTAGCAGCTGTGAGTGTAATCGCCTCATCACCGCTTCGTTTCTTGACTACCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024L19+          CATTGGTGGTCTGTCAGCCGTGGGATGTGGCATTTATTGTGTCAGCCGGATTGTTTCTGA
                      ____________________________________________________________
consensus             CATTGGTGGTCTGTCAGCCGTGGGATGTGGCATTTATTGTGTCAGCCGGATTGTTTCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024L19+          TATTGGAGTGCGTCGGGATGTCACAAAGATACACGTGGAAAAGCTCGTTGCCCGTTTTAG
                      ____________________________________________________________
consensus             TATTGGAGTGCGTCGGGATGTCACAAAGATACACGTGGAAAAGCTCGTTGCCCGTTTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024L19+          CCCAGGCCTGGCTGAGTCTAGAGCTGGAACGTCTGATAGCCAAGTGCGTGATGGTTTTCC
                      ____________________________________________________________
consensus             CCCAGGCCTGGCTGAGTCTAGAGCTGGAACGTCTGATAGCCAAGTGCGTGATGGTTTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024L19+          AAAGACACCAGTCGAGAGTCCAATTGGCCACTCTAGCCCTGACCCTGAGCCTGAAACTGC
                      ____________________________________________________________
consensus             AAAGACACCAGTCGAGAGTCCAATTGGCCACTCTAGCCCTGACCCTGAGCCTGAAACTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024L19+          AACATCCATCTAACAGTGTAGTATGTGACAACATCACAAAGAGTATTGCCACAGGCTCTA
                      ____________________________________________________________
consensus             AACATCCATCTAACAGTGTAGTATGTGACAACATCACAAAGAGTATTGCCACAGGCTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024L19+          GCGTTTCTGAGTCTGAAGCTGAAAGATCTGATAGCGGAGCCTGCTGTGATCTCACCATCG
                      ____________________________________________________________
consensus             GCGTTTCTGAGTCTGAAGCTGAAAGATCTGATAGCGGAGCCTGCTGTGATCTCACCATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024L19+          AGAGGCTTGCCATTTGTCAATTGGTCTAGCCTGCCCGAGACGAAAGCTGGAACTGATGCT
                      ____________________________________________________________
consensus             AGAGGCTTGCCATTTGTCAATTGGTCTAGCCTGCCCGAGACGAAAGCTGGAACTGATGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024L19+          GAAAAGGAGTCGTAATTCTTGTTGTGTGTGTTATATATGTATTCTGCGTGTGTATGTAGT
                      ____________________________________________________________
consensus             GAAAAGGAGTCGTAATTCTTGTTGTGTGTGTTATATATGTATTCTGCGTGTGTATGTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024L19+          GCTCATCTCCATAGCCTGTAAGCCTGCCTGCATGGCTATTAGGCACATCAGAGTGAGTAA
                      ____________________________________________________________
consensus             GCTCATCTCCATAGCCTGTAAGCCTGCCTGCATGGCTATTAGGCACATCAGAGTGAGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024L19+          GTTTTTGTGATATAATTATGATATTGACATAAGTGTACTGTCATTAGTGATCTAGTGAGA
                      ____________________________________________________________
consensus             GTTTTTGTGATATAATTATGATATTGACATAAGTGTACTGTCATTAGTGATCTAGTGAGA