Contig 011327:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF018F10+                                                       CCCGACCAGAGCATC
                      ____________________________________________________________
consensus                                                          CCCGACCAGAGCATC
 
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rJMSF018F10+          GTCGTCGTCCACGAAACGGAAAGCTGCTATTTCCATGGCAAGATGGGGAGTTCACTACAC
                      ____________________________________________________________
consensus             GTCGTCGTCCACGAAACGGAAAGCTGCTATTTCCATGGCAAGATGGGGAGTTCACTACAC
 
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rJMSF018F10+          GGAGGCTTGCACTGGTTAGCCGACCGGGGAGTTAACGGCGGCGGCCTGATACTCCGTCTC
                      ____________________________________________________________
consensus             GGAGGCTTGCACTGGTTAGCCGACCGGGGAGTTAACGGCGGCGGCCTGATACTCCGTCTC
 
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rJMSF018F10+          GACTTAACGGCGGAAACATTCAGCGAGCTGCCTCAACCTACGACGGGAGATCCGAACACA
rJMSF024H20+                             TCAGCGAGCTGCCTCAACCTACGACGGGAGATCCGAACACA
                      ____________________________________________________________
consensus             GACTTAACGGCGGAAACATTCAGCGAGCTGCCTCAACCTACGACGGGAGATCCGAACACA
 
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rJMSF018F10+          ACTTTCGAGGTTCTTTGGGTTTTAAAGGATCGTCTGGGTTTACTGTCCACTCCTACGGCC
rJMSF024H20+          ACTTTCGAGGTTCTTTGGGTTTTAAAGGATCGTCTGGGTTTACTGTCCACTCCTACGGCC
                      ____________________________________________________________
consensus             ACTTTCGAGGTTCTTTGGGTTTTAAAGGATCGTCTGGGTTTACTGTCCACTCCTACGGCC
 
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rJMSF018F10+          ATTGACTGTAACATTGAGTTNTGGGAGATGGAGGAATATGGTATCGGCACGTCGTGGAAG
rJMSF024H20+          ATTGACTGTAACATTGAGTTCTGGGAGATGGAGGAATATGGTATCGGCACGTCGTGGAAG
                      ____________________________________________________________
consensus             ATTGACTGTAACATTGAGTTCTGGGAGATGGAGGAATATGGTATCGGCACGTCGTGGAAG
 
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rJMSF018F10+          AAATTGTTCTCCACCGGCGAGAGCCTGGAGTTCGGTGAATATGTTGCCCCTTTGTGCGTT
rJMSF024H20+          AAATTGTTCTCCACCGGCGAGAGCCTGGAGTTCGGTGAATATGTTGCCCCTTTGTGCGTT
                      ____________________________________________________________
consensus             AAATTGTTCTCCACCGGCGAGAGCCTGGAGTTCGGTGAATATGTTGCCCCTTTGTGCGTT
 
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rJMSF018F10+          GCGAGGAATGGGGATTTGATAATCGAGATTGATGGATGGTTTACGGTGAGGTACAACGTA
rJMSF024H20+          GCGAGGAATGGGGATTTGATAATCGAGATTGATGGATGGTTTACGGTGAGGTACAACGTA
                      ____________________________________________________________
consensus             GCGAGGAATGGGGATTTGATAATCGAGATTGATGGATGGTTTACGGTGAGGTACAACGTA
 
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rJMSF018F10+          GGAGAGAAGACATTTGAATATNTGAAATGCAATCACCCCGACATGCATAGGTGCAGCGTG
rJMSF024H20+          GGAGAGAAGACATTTGAATATCTGAAATGCAATCACCCCGACATGCATAGGTGCAGCGTG
                      ____________________________________________________________
consensus             GGAGAGAAGACATTTGAATATCTGAAATGCAATCACCCCGACATGCATAGGTGCAGCGTG
 
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rJMSF018F10+          TATATGCAAACCATGGTCTCCCCTTATAAAATACCAAAAAAAACCATTGGATATGTTAAT
rJMSF024H20+          TATATGCAAACCATGGTCTCCCCTTATAAAATACCAAAAAAAACCATTGGATATGTTAAT
                      ____________________________________________________________
consensus             TATATGCAAACCATGGTCTCCCCTTATAAAATACCAAAAAAAACCATTGGATATGTTAAT
 
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rJMSF018F10+          GAAGGAAGAGTTTGCAAGAAGAAGAGAAGCACAAGGGCAGTGAAGAAGTCAAAGGACTGG
rJMSF024H20+          GAAGGAAGAGTTTGCAAGAAGAAGAGAAGCACAAGGGCAGTGAAGAAGTCAAAGGACTGG
                      ____________________________________________________________
consensus             GAAGGAAGAGTTTGCAAGAAGAAGAGAAGCACAAGGGCAGTGAAGAAGTCAAAGGACTGG
 
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rJMSF018F10+          AACGACGACGTTCGAAGAAACAGTTAGAAGTAGTTGAAGGAAGAGATCATACGTCGTCAT
rJMSF024H20+          AACGACGACGTTCGAAGAAACAGTTAGAAGTAGTTGAAGGAAGAGATCATACGTCGTCAT
                      ____________________________________________________________
consensus             AACGACGACGTTCGAAGAAACAGTTAGAAGTAGTTGAAGGAAGAGATCATACGTCGTCAT
 
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rJMSF018F10+          TTCACAGTGGCAGTTGAAGACAGTTGGAGCAAGCGTTAGACGACGTCGTTTTGTGTATTT
rJMSF024H20+          TTCACAGTGGCAGTTGAAGACAGTTGGAGCAAGCGTTAGACGACGTCGTTTTGTGTATTT
                      ____________________________________________________________
consensus             TTCACAGTGGCAGTTGAAGACAGTTGGAGCAAGCGTTAGACGACGTCGTTTTGTGTATTT
 
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rJMSF018F10+          CCATTGAATATAGCTAATGT                                        
rJMSF024H20+          CCATTGAATATAGCTAATGTATAAAAAGGTTATTTTTATTGATCTTAAGGAGTTTGGATG
                      ____________________________________________________________
consensus             CCATTGAATATAGCTAATGTATAAAAAGGTTATTTTTATTGATCTTAAGGAGTTTGGATG
 
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rJMSF024H20+          TGATTTAATATGGCTAATTTCATTGAATTAGGGGAATTCATACTGATGATGCTTACTGGG
                      ____________________________________________________________
consensus             TGATTTAATATGGCTAATTTCATTGAATTAGGGGAATTCATACTGATGATGCTTACTGGG
 
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rJMSF024H20+          TGTGCTTTGAAATGATTTGTTGATATGATGTTTTGAACTAGAATTGGAGCAGGAGAATAC
                      ____________________________________________________________
consensus             TGTGCTTTGAAATGATTTGTTGATATGATGTTTTGAACTAGAATTGGAGCAGGAGAATAC