Contig 011324:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023P06Sequence637011324 (2)emb|CDY22876.1|5e-25BnaA06g02010D [Brassica napus]762011324 (2)ref|XP_008387418.1|8e-46PREDICTED: auxin-responsive protein IAA26, partial [Malus domestica]

Alignment

This contig is upended


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JMSF023P06-                                                   GAACAGGAAAAGAACTATCC
                      ____________________________________________________________
consensus                                                     GAACAGGAAAAGAACTATCC
 
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JMSF023P06-           TATATATCTATGCAAACCAACACAAACTACATACTTTACTTCATAGTACTCCACCTTCAC
                      ____________________________________________________________
consensus             TATATATCTATGCAAACCAACACAAACTACATACTTTACTTCATAGTACTCCACCTTCAC
 
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JMSF023P06-           CACAACTATTATTTCTTCTCCTTCAATTTTTCTCCATCTATAAAACAACAGAATGGAAGA
                      ____________________________________________________________
consensus             CACAACTATTATTTCTTCTCCTTCAATTTTTCTCCATCTATAAAACAACAGAATGGAAGA
 
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JMSF023P06-           AATTCCCAAGTTTCTCTATGCGATTCCTATAGGAACAACGAGTGAGAACAATGGGAAACA
                      ____________________________________________________________
consensus             AATTCCCAAGTTTCTCTATGCGATTCCTATAGGAACAACGAGTGAGAACAATGGGAAACA
 
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JMSF023P06-           TGAAATCTTAGAGAATAGAAAGCTCGAGCTTAGGCTTGCTCCTCCGGGGCAAGAACAGCC
                      ____________________________________________________________
consensus             TGAAATCTTAGAGAATAGAAAGCTCGAGCTTAGGCTTGCTCCTCCGGGGCAAGAACAGCC
 
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JMSF023P06-           TCCTCTGCTTTCTCTTCCTGGAGCCAAAAGAGGGATATTACATGAAGGTACAAATAGGAT
                      ____________________________________________________________
consensus             TCCTCTGCTTTCTCTTCCTGGAGCCAAAAGAGGGATATTACATGAAGGTACAAATAGGAT
 
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JMSF023P06-           TTCGCCAGCACAAGATCAAAGGAGTGCCAAAAACTGCAGGCTCGAGAAGAGCCCAGTCAT
rJMSF023P06+                            AAGGAGTGCCAAAAACTGCAGGCTCGAGAAGAGCCCAGTCAT
                      ____________________________________________________________
consensus             TTCGCCAGCACAAGATCAAAGGAGTGCCAAAAACTGCAGGCTCGAGAAGAGCCCAGTCAT
 
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JMSF023P06-           CGGTTGGCCCCCAGTTCGTTCGTCTAGAAAAAACACTACAGCTAGTGGTTCTCTGAAGCA
rJMSF023P06+          CGGTTGGCCCCCAGTTCGTTCGTCTAGAAAAAACACTACAGCTAGTGGTTCTCTGAAGCA
                      ____________________________________________________________
consensus             CGGTTGGCCCCCAGTTCGTTCGTCTAGAAAAAACACTACAGCTAGTGGTTCTCTGAAGCA
 
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JMSF023P06-           AACAGGCCCAAAGATTACTAGTATGATCAAAGAGGAGAAAGATGATGGCAGCTCGGAAAA
rJMSF023P06+          AACAGGCCCAAAGATTACTAGTATGATCAAAGAGGAGAAAGATGATGGCAGCTCGGAAAA
                      ____________________________________________________________
consensus             AACAGGCCCAAAGATTACTAGTATGATCAAAGAGGAGAAAGATGATGGCAGCTCGGAAAA
 
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JMSF023P06-           GCCTAAAGATGCTTTGTTTGTGAAGGTTAACATGGAGGGTGTCCCCATAGGAAGAAAAGT
rJMSF023P06+          GCCTAAAGATGCTTTGTTTGTGAAGGTTAACATGGAGGGTGTCCCCATAGGAAGAAAAGT
                      ____________________________________________________________
consensus             GCCTAAAGATGCTTTGTTTGTGAAGGTTAACATGGAGGGTGTCCCCATAGGAAGAAAAGT
 
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JMSF023P06-           TGATCTGACAGTTTATGACAATTATGAAGCACTCTACTCAGGTGTTGATGCACTCTTCAC
rJMSF023P06+          TGATCTGACAGTTTATGACAATTATGAAGCACTCTACTCAGGTGTTGATGCACTCTTCAC
                      ____________________________________________________________
consensus             TGATCTGACAGTTTATGACAATTATGAAGCACTCTACTCAGGTGTTGATGCACTCTTCAC
 
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JMSF023P06-           AGGACTTCTTGCTGCTC                                           
rJMSF023P06+          AGGACTTCTTGCTGCTCAAAGAGATGATTTGGCTGGTCTAGAGGGAAATGAGGCAACTGC
                      ____________________________________________________________
consensus             AGGACTTCTTGCTGCTCAAAGAGATGATTTGGCTGGTCTAGAGGGAAATGAGGCAACTGC
 
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rJMSF023P06+          ACAAGTTCACAGTGGAATATCAGGAAGCAAGGAATATACACTAGTTTATGAGGATGAGGA
                      ____________________________________________________________
consensus             ACAAGTTCACAGTGGAATATCAGGAAGCAAGGAATATACACTAGTTTATGAGGATGAGGA
 
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rJMSF023P06+          AGGAGACAGAATGCTAGTGGGTGATGTTCCCTGGCACATGTTTATATCTTCGGCTAAGAG
                      ____________________________________________________________
consensus             AGGAGACAGAATGCTAGTGGGTGATGTTCCCTGGCACATGTTTATATCTTCGGCTAAGAG
 
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rJMSF023P06+          GTTGCGCCCTTGAAGAAGTCCGAAGTTTCTGCACTATACATTAGCAGAGGCAAGCTGGGG
                      ____________________________________________________________
consensus             GTTGCGCCCTTGAAGAAGTCCGAAGTTTCTGCACTATACATTAGCAGAGGCAAGCTGGGG
 
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rJMSF023P06+          AACTTTTGAACCAATCAGGCTTGGCTACAACCACTGGGAGATGCTATATAATTTTATAAT
                      ____________________________________________________________
consensus             AACTTTTGAACCAATCAGGCTTGGCTACAACCACTGGGAGATGCTATATAATTTTATAAT
 
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rJMSF023P06+          AATTCTCCTTTCCTGTGTGCTATCACTTCAAAGGGCCAATAATGTAGTCCCTATTTCTGT
                      ____________________________________________________________
consensus             AATTCTCCTTTCCTGTGTGCTATCACTTCAAAGGGCCAATAATGTAGTCCCTATTTCTGT
 
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rJMSF023P06+          GTATTATTCCTCAGAGTCTATCTTTAAAGTTAAATGTAGTACAAATATGTGTGCTTATAT
                      ____________________________________________________________
consensus             GTATTATTCCTCAGAGTCTATCTTTAAAGTTAAATGTAGTACAAATATGTGTGCTTATAT
 
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rJMSF023P06+          AGGCTATTGTATCAATTTCACAATTGAAGTGTATGTAACCATATCCGTAAGAATGTAATG
                      ____________________________________________________________
consensus             AGGCTATTGTATCAATTTCACAATTGAAGTGTATGTAACCATATCCGTAAGAATGTAATG