Contig 011323:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018N17Sequence402005024 (10)789011323 (3)ref|XP_002510776.1|74.7RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1
JMSF023H11Sequence432005024 (10)750011323 (3)ref|XP_002510776.1|85.1RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1
JMSF034F15Sequence414005024 (10)701011323 (3)ref|XP_002510776.1|67.4RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1

Alignment

This contig is upended


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rJMSF018N17+                                                     CTATGGGTACTCTTNGT
                      ____________________________________________________________
consensus                                                        CTATGGGTACTCTTNGT
 
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rJMSF018N17+          ACTCGCCAGACTACACCTACCCCACGGGTTACTACAGTGTGTATGGAGGAGTCACCGGGC
rJMSF023H11+                                        ACTACAGTGTGTATGGAGGAGTCACCGGGC
                      ____________________________________________________________
consensus             ACTCGCCAGACTACACCTACCCCACGGGTTACTACAGTGTGTATGGAGGAGTCACCGGGC
 
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rJMSF018N17+          AGTTTCCAATGTATGGAACCGGGGCAAGTGGACTGTTATCCGGCGCGGCGGCCGCGGCCG
rJMSF034F15+                           ACCGGGGCAAGTGGACTGTTATCCGGCGCGGCGGCCGCGGCCG
rJMSF023H11+          AGTTTCCAATGTATGGAACCGGGGCAAGTGGACTGTTATCCGGCGCGGCGGCCGCGGCCG
                      ____________________________________________________________
consensus             AGTTTCCAATGTATGGAACCGGGGCAAGTGGACTGTTATCCGGCGCGGCGGCCGCGGCCG
 
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rJMSF018N17+          CCTTCTATCCTTACTTGAACTTCGGAGAAGGAAACGGTGGAGCCACCACCGGCTACACGG
rJMSF034F15+          CNTTCTATCCTTACTTGAACTTCGGAGAAGGAANCGGTGGAGCCACCACCGGCTACACGG
rJMSF023H11+          CCTTCTATCCTTACTTGAACTTCGGAGAAGGAAACGGTGGAGCCACCACCGGCTACACGG
                      ____________________________________________________________
consensus             CCTTCTATCCTTACTTGAACTTCGGAGAAGGAAACGGTGGAGCCACCACCGGCTACACGG
 
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rJMSF018N17+          CGGCAGCTAGCCAGGGCTACGGCGGCGTCCAGTATCCTCACCACCTCTTTCCGTACTCGG
rJMSF034F15+          CGGCAGCTAGCCAGGGCTACGGCGGCGTCCAGTATCCTCACCACCCCTTTCCGTACTCGG
rJMSF023H11+          CGGCAGCTAGCCAGGGCTACGGCGGCGTCCAGTATCCTCACCACCTCTTTCCGTACTCGG
                      ____________________________________________________________
consensus             CGGCAGCTAGCCAGGGCTACGGCGGCGTCCAGTATCCTCACCACCTCTTTCCGTACTCGG
 
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rJMSF018N17+          CTACCGTTAACACCACCGCCGGTTACCCTGCACAGCACTTTGCCAACCCCATTTCTCTTG
rJMSF034F15+          CTACCGTTAACACCACCGCCGGTTACCCTGCACAGCACTTTGCCAACCCCATTTCTCTTG
rJMSF023H11+          CTACCGTTAACACCACCGCCGGTTACCCTGCACAGCACTTTGCCAACCCCATTTCTCTTG
                      ____________________________________________________________
consensus             CTACCGTTAACACCACCGCCGGTTACCCTGCACAGCACTTTGCCAACCCCATTTCTCTTG
 
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rJMSF018N17+          CTCACACAGCTCCAATGCAATCAGTTTGTTTTGCTGTGCCACAGGCTTGACCATGGCGGC
rJMSF034F15+          CTCACACAGCTCCAATGCAATCAGTTTGTTTTGCTGTGCCACAGGCTTGACCATGGCGGC
rJMSF023H11+          CTCACACAGCTCCAATGCAATCAGTTTGTTTTGCTGTGCCACAGGCTTGACCATGGCGGC
                      ____________________________________________________________
consensus             CTCACACAGCTCCAATGCAATCAGTTTGTTTTGCTGTGCCACAGGCTTGACCATGGCGGC
 
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rJMSF018N17+          GTTACGTGCACCGCTGCCTCATCGCTAATAGGATGGCATTACTTATCATCAAGAGAGATG
rJMSF034F15+          GTTACGTGCACCGCTGCCTCATCGCTAATAGGATGGCATTACTTATCATCAAGAGAGATG
rJMSF023H11+          GTTACGTGCACCGCTGCCTCATCGCTAATAGGATGGCATTACTTATCATCAAGAGAGATG
                      ____________________________________________________________
consensus             GTTACGTGCACCGCTGCCTCATCGCTAATAGGATGGCATTACTTATCATCAAGAGAGATG
 
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rJMSF018N17+          AACTTTAGTAGTCGTCGTCGTCTACCTACTTAGTTACTTCATCATGATCTGATCGATCAA
rJMSF034F15+          AACTTTAGTAGTCGTCGTCGTCTACCTACTTAGTTACTTCATCATGATCTGATCGATCAA
rJMSF023H11+          AACTTTAGTAGTCGTCGTCGTCTACCTACTTAGTTACTTCATCATGATCTGATCGATCAA
                      ____________________________________________________________
consensus             AACTTTAGTAGTCGTCGTCGTCTACCTACTTAGTTACTTCATCATGATCTGATCGATCAA
 
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rJMSF018N17+          TCGAAGTACCTTTGGCCTGCCATGGTTACATCTTCTACCTTTCTCTCTTCGTCGTAAATG
rJMSF034F15+          TCGAAGTACCTTTGGCCTGCCATGGTTACATCTTCTACCTTTCTCTCTTCGTCGTAAATG
rJMSF023H11+          TCGAAGTACCTTTGGCCTGCCATGGTTACATCTTCTACCTTTCTCTCTTCGTCGTAAATG
                      ____________________________________________________________
consensus             TCGAAGTACCTTTGGCCTGCCATGGTTACATCTTCTACCTTTCTCTCTTCGTCGTAAATG
 
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rJMSF018N17+          GCGGCCCGAATGTGGAAATTCGGGCCCGCCCAAGGGCTGGATCCCCTCGTAGGGGCACCA
rJMSF034F15+          GCGGCCCGAATGTGGAAATTCGGGCCCGCCCAAGGGCTGGATCCCCTCGTAGGGGCACCA
rJMSF023H11+          GCGGCCCGAATGTGGAAATTCGGGCCCGCCCAAGGGCTGGATCCCCTCGTAGGGGCACCA
                      ____________________________________________________________
consensus             GCGGCCCGAATGTGGAAATTCGGGCCCGCCCAAGGGCTGGATCCCCTCGTAGGGGCACCA
 
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rJMSF018N17+          TACCCTTTCAGAGTTTGGAGTAAAAGTTATCAGTTTTCTTCTCTTTCAAGGAAAGGTTCC
rJMSF034F15+          TACCCTTTCAGAGTTTGGAGTAAAAGTTATCAGTTTTCTTCTCTTTCAAGGAAAGGTTCC
rJMSF023H11+          TACCCTTTCAGAGTTTGGAGTAAAAGTTATCAGTTTTCTTCTCTTTCAAGGAAAGGTTCC
                      ____________________________________________________________
consensus             TACCCTTTCAGAGTTTGGAGTAAAAGTTATCAGTTTTCTTCTCTTTCAAGGAAAGGTTCC
 
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rJMSF018N17+          TTCAAGAGATAGAAATTGCATCATCACATCACCAACTCTAGCTTGTGGTACAGCCAGGTT
rJMSF034F15+          TTCAAGAGATAGAAATTGCATCATCACATCACCAACTCTAGCTTGTGGTACAGCCAGGTT
rJMSF023H11+          TTCAAGAGATAGAAATTGCATCATCACATCACCAACTCTAGCTTGTGGTACAGCCAGGTT
                      ____________________________________________________________
consensus             TTCAAGAGATAGAAATTGCATCATCACATCACCAACTCTAGCTTGTGGTACAGCCAGGTT
 
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rJMSF018N17+          GGTAATGTTTTTCTTGTCATTTTTCTTTTGGGTTTCAAGAAAGACTTAGGCT        
rJMSF034F15+          GGTAATGTTTTTCTTGTCATTTTTCTTTTGGGTTTCAAGAAAGACTTAGGCT        
rJMSF023H11+          GGTAATGTTTTTCTTGTCATTTTTCTTTTGGGTTTCAAGAAAGACTTAGGCTCGAAAAGC
                      ____________________________________________________________
consensus             GGTAATGTTTTTCTTGTCATTTTTCTTTTGGGTTTCAAGAAAGACTTAGGCTCGAAAAGC