Contig 011322:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023D24Sequence641011322 (2)ref|XP_007011187.1|8e-64Seven in absentia of 2 isoform 1 [Theobroma cacao] ref|XP_007011188.1| Seven in 769011322 (2)ref|NP_001268043.1|2e-139SINA2p [Vitis vinifera] ref|XP_010653732.1| PREDICTED: SINA2p isoform X1 [Vitis

Alignment

This contig is upended


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JMSF023D24-                                                   GGCACTGAATATTTCTGCAC
                      ____________________________________________________________
consensus                                                     GGCACTGAATATTTCTGCAC
 
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JMSF023D24-           ACCATAGAAGACGTTTAGATAGTACAGTATATTGTTGTCGCTACCAGATTGGGCGTGTCT
                      ____________________________________________________________
consensus             ACCATAGAAGACGTTTAGATAGTACAGTATATTGTTGTCGCTACCAGATTGGGCGTGTCT
 
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JMSF023D24-           ATGTAAACAGAACAGAGGACTCAGAAAGTCAGCTCGCTCAAAGTATTTGATCGATCATGG
                      ____________________________________________________________
consensus             ATGTAAACAGAACAGAGGACTCAGAAAGTCAGCTCGCTCAAAGTATTTGATCGATCATGG
 
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JMSF023D24-           CTCCCGGAGGTGGAGCTTGTAGAGAAGTGGTGGAAACACAGCCGAAGTCTGCGAATTTTG
                      ____________________________________________________________
consensus             CTCCCGGAGGTGGAGCTTGTAGAGAAGTGGTGGAAACACAGCCGAAGTCTGCGAATTTTG
 
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JMSF023D24-           ATATGGCAACGAAACGGCGACCAGAGAAAAGCAGGGCTCTGGTGAAGTATGCCGGCGGGA
                      ____________________________________________________________
consensus             ATATGGCAACGAAACGGCGACCAGAGAAAAGCAGGGCTCTGGTGAAGTATGCCGGCGGGA
 
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JMSF023D24-           GAGGCGACAAGATGGATGGGCCTTTGAATTATGACGTGCACCAGCTGCTGGAGTGCCCCG
                      ____________________________________________________________
consensus             GAGGCGACAAGATGGATGGGCCTTTGAATTATGACGTGCACCAGCTGCTGGAGTGCCCCG
 
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JMSF023D24-           TCTGCAGAAATTCGATGCTTCCACCGATTTTTCAGTGTCCAAAGGGGCACACCCTATGCG
rJMSF023D24+                       GATGCTTCCACCGATTTTTCAGTGTCCAAAGGGGCACACCCTATGCG
                      ____________________________________________________________
consensus             TCTGCAGAAATTCGATGCTTCCACCGATTTTTCAGTGTCCAAAGGGGCACACCCTATGCG
 
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JMSF023D24-           CAAGCTGCAATGGAGCGCACAAGATTTGCCCGACTTGCCAATCTGAGATGGGAGACATCA
rJMSF023D24+          CAAGCTGCAATGGAGCGCACAAGATTTGCCCGACTTGCCAATCTGAGATGGGAGACATCA
                      ____________________________________________________________
consensus             CAAGCTGCAATGGAGCGCACAAGATTTGCCCGACTTGCCAATCTGAGATGGGAGACATCA
 
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JMSF023D24-           GGTGCTTAGTCCTGGAAAAAGTGGCCGACTCTTTGGATCTTCCCTGCAGATTCCAAAGCG
rJMSF023D24+          GGTGCTTAGTCCTGGAAAAAGTGGCCGACTCTTTGGATCTTCCCTGCAGATTCCAAAGCG
                      ____________________________________________________________
consensus             GGTGCTTAGTCCTGGAAAAAGTGGCCGACTCTTTGGATCTTCCCTGCAGATTCCAAAGCG
 
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JMSF023D24-           CCGGCTGTGATCATATATTTCCGTATTACAGGAAGCTGAATCACGAAAAACGTTGTAGAT
rJMSF023D24+          CCGGCTGTGATCATATATTTCCGTATTACAGGAAGCTGAATCACGAAAAACGTTGTAGAT
                      ____________________________________________________________
consensus             CCGGCTGTGATCATATATTTCCGTATTACAGGAAGCTGAATCACGAAAAACGTTGTAGAT
 
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JMSF023D24-           TCCGCCCCTACAATTGCCCCTACGCAGGATCAGAGTGTTGCGTCACCGGCGACATCCCAG
rJMSF023D24+          TCCGCCCCTACAATTGCCCCTACGCAGGATCAGAGTGTTGCGTCACCGGCGACATCCCAG
                      ____________________________________________________________
consensus             TCCGCCCCTACAATTGCCCCTACGCAGGATCAGAGTGTTGCGTCACCGGCGACATCCCAG
 
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JMSF023D24-           CCCTGGTAAAGCATCTCAGGG                                       
rJMSF023D24+          CCCTGGTAAAGCATCTCAGGGAGGATCACAAGGTCGACATGCATAACGGCTGCACCTTTA
                      ____________________________________________________________
consensus             CCCTGGTAAAGCATCTCAGGGAGGATCACAAGGTCGACATGCATAACGGCTGCACCTTTA
 
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rJMSF023D24+          ACCATCGCTATGTCAAGTCAGATCCTCAACAAGTTGAAAACGCAACATGGATGCTCACTG
                      ____________________________________________________________
consensus             ACCATCGCTATGTCAAGTCAGATCCTCAACAAGTTGAAAACGCAACATGGATGCTCACTG
 
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rJMSF023D24+          TGTTTGACTGTCATGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCCTCTGGGAACGA
                      ____________________________________________________________
consensus             TGTTTGACTGTCATGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCCTCTGGGAACGA
 
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rJMSF023D24+          CGCCGGTGTACATGGCCTTTCTGCGGTTCATGGGCGAAGATGGCGAGGCTAAATTGTTCA
                      ____________________________________________________________
consensus             CGCCGGTGTACATGGCCTTTCTGCGGTTCATGGGCGAAGATGGCGAGGCTAAATTGTTCA
 
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rJMSF023D24+          GCTATAGTTTGGAAGTAGGCGGGCATGGGCGCAAACTGACATGGCAAGGAGTGCCAAGGA
                      ____________________________________________________________
consensus             GCTATAGTTTGGAAGTAGGCGGGCATGGGCGCAAACTGACATGGCAAGGAGTGCCAAGGA
 
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rJMSF023D24+          GTATCCGTGAAAGCCATAGACAGGTTCGGGATAGTCAAGATGGGCTCATAATTCCAAGAA
                      ____________________________________________________________
consensus             GTATCCGTGAAAGCCATAGACAGGTTCGGGATAGTCAAGATGGGCTCATAATTCCAAGAA
 
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rJMSF023D24+          CCATAGCGCTTTACTTCTCCGCCGGCGATGCCCAAGAGCTTAAGCTAAAGGTAACAGGTC
                      ____________________________________________________________
consensus             CCATAGCGCTTTACTTCTCCGCCGGCGATGCCCAAGAGCTTAAGCTAAAGGTAACAGGTC
 
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rJMSF023D24+          GAATATGGAAGGAGCAGTAATATAATAAGCTTCTATAAGCTCATCTCATCTGCTTATTAT
                      ____________________________________________________________
consensus             GAATATGGAAGGAGCAGTAATATAATAAGCTTCTATAAGCTCATCTCATCTGCTTATTAT