Contig 011321:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF035K01-                                   GATACTTCTCCCTCGTCTCTCACCACCTCTGCGCCT
JMSF022N12-                                   GATACTTCTCCCTCGTCTCTCACCACCTCTGCGCCT
                      ____________________________________________________________
consensus                                     GATACTTCTCCCTCGTCTCTCACCACCTCTGCGCCT
 
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JMSF035K01-           CCTGCCTCCGTTCACGCCCTCGGCGACACTCCGGTCAGCCGGTCACTCCCTCGCTCCTCA
JMSF022N12-           CCTGCCTCCGTTCACGCCCTCGGCGACACTCCGGTCAGCCGGTCACTCCCTCGCTCCTCA
                      ____________________________________________________________
consensus             CCTGCCTCCGTTCACGCCCTCGGCGACACTCCGGTCAGCCGGTCACTCCCTCGCTCCTCA
 
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JMSF035K01-           GTCCTCACTTCATCGACTCAGCAGTTGCGTCCGTACGGGACTCAGGCACTCAGCGGAGAC
JMSF022N12-           GTCCTCACTTCATCGACTCAGCAGTTGCGTCCGTACGGGACTCAGGCACTCAGCGGAGAC
                      ____________________________________________________________
consensus             GTCCTCACTTCATCGACTCAGCAGTTGCGTCCGTACGGGACTCAGGCACTCAGCGGAGAC
 
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JMSF035K01-           CGTACGGGACTTAGGCACTCAGCGGCTCTGCGACCTCAACTCAGCTTCGCCCCTCAGCTA
JMSF022N12-           CGTACGGGACTTAGGCACTCAGCGGCTCTGCGACCTCAACTCAGCTTCGCCCCTCAGCTA
                      ____________________________________________________________
consensus             CGTACGGGACTTAGGCACTCAGCGGCTCTGCGACCTCAACTCAGCTTCGCCCCTCAGCTA
 
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JMSF035K01-           GTCAGCTGCTTCACTGAGTCACAATAAATCCATGGCTCAAGTTGAGCACCTAGAGACAAT
JMSF022N12-           GTCAGCTGCTTCACTGAGTCACAATAAATCCATGGCTCAAGTTGAGCACCTAGAGACAAT
                      ____________________________________________________________
consensus             GTCAGCTGCTTCACTGAGTCACAATAAATCCATGGCTCAAGTTGAGCACCTAGAGACAAT
 
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JMSF035K01-           GTGGGAAGAAGAGAAGAAGGACAATTGTAATGGAGAAGAACAAAATCCAGTGAATACAAA
JMSF022N12-           GTGGGAAGAAGAGAAGAAGGACAATTGTAATGGAGAAGAACAAAATCCAGTGAATACAAA
                      ____________________________________________________________
consensus             GTGGGAAGAAGAGAAGAAGGACAATTGTAATGGAGAAGAACAAAATCCAGTGAATACAAA
 
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JMSF035K01-           TAAGAGAAAGTACAAGGAAGTTGCAGTATTTGGGAACTATAGAAACTACTATGGATACAG
JMSF022N12-           TAAGAGAAAGTACAAGGAAGTTGCAGTATTTGGGAACTATAGAAACTACTATGGATACAG
                      ____________________________________________________________
consensus             TAAGAGAAAGTACAAGGAAGTTGCAGTATTTGGGAACTATAGAAACTACTATGGATACAG
 
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JMSF035K01-           AATTGGCCTTGATGAAGATCCTAGGTTAAAGGCTATGAAGAAAGAATGGTTTGAAGGCAA
JMSF022N12-           AATTGGCCTTGATGAAGATCCTAGGTTAAAGGCTATGAAGAAAGAATGGTTTGAAGGCAA
                      ____________________________________________________________
consensus             AATTGGCCTTGATGAAGATCCTAGGTTAAAGGCTATGAAGAAAGAATGGTTTGAAGGCAA
 
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JMSF035K01-           GAATTGTCTTGATATTGGCTGCAATAGTGGAGCTGTTACTATTGCTATTGGTATGTATTT
JMSF022N12-           GAATTGTCTTGATATTGGCTGCAATAGTGGAGCTGTTACTATTGCTATTGGTATGTATTT
                      ____________________________________________________________
consensus             GAATTGTCTTGATATTGGCTGCAATAGTGGAGCTGTTACTATTGCTATTGGTATGTATTT
 
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JMSF035K01-           GAAATTTTAATAGCTTTAATTTTTATCTACAGTTTATATATTTCTCAATTTGGCATTTTT
JMSF022N12-           GAAATTTTAATAGCTTTAATTTTTATCTACAGTTTATATATTTCTCAATTTGGCATTTTT
                      ____________________________________________________________
consensus             GAAATTTTAATAGCTTTAATTTTTATCTACAGTTTATATATTTCTCAATTTGGCATTTTT
 
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JMSF035K01-           AGATGGATGAAAAGAAAGAA                                        
JMSF022N12-           AGATGGATGAAAAGAAAGAAAATATCAAAGTCATTGATTATGACTGGTGAATATTTTCTG
                      ____________________________________________________________
consensus             AGATGGATGAAAAGAAAGAAAATATCAAAGTCATTGATTATGACTGGTGAATATTTTCTG
 
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JMSF022N12-           TCTACAGCTCAAAAGTTTTGTTGCCGAAGCATTCTTGGAATTGACATCGATAGTGATCGA
rJMSF022N12+               AGCTCAAAAGTTTTGTTGCCGAAGCATTCTTGGAATTGACATCGATAGTGATCGA
                      ____________________________________________________________
consensus             TCTACAGCTCAAAAGTTTTGTTGCCGAAGCATTCTTGGAATTGACATCGATAGTGATCGA
 
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JMSF022N12-           GTTACGGAT                                                   
rJMSF035K01+                              TCTCAAGAAAGTAGAAAGGGCTCATGAGAGATTGCTATTG
rJMSF022N12+          GTTACGGATTCTTATTGGCATCTCAAGAAAGTAGAAAGGGCTCATGAGAGATTGCTATTG
                      ____________________________________________________________
consensus             GTTACGGATTCTTATTGGCATCTCAAGAAAGTAGAAAGGGCTCATGAGAGATTGCTATTG
 
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rJMSF035K01+          AAAACATCTAAACAAGTGGATTCTAAGAGGTTAAATGGTTTGGAGGGCCATCTAGCAGAG
rJMSF022N12+          AAAACATCTAAACAAGTGGATTCTAAGAGGTTAAATGGTTTGGAGGGCCATCTAGCAGAG
                      ____________________________________________________________
consensus             AAAACATCTAAACAAGTGGATTCTAAGAGGTTAAATGGTTTGGAGGGCCATCTAGCAGAG
 
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rJMSF035K01+          TCTCTTAATGGCAGAACAAGGGATGATTCTGAAGAATCTCATGCATCAGGAAGGAGAGAT
rJMSF022N12+          TCTCTTAATGGCAGAACAAGGGATGATTCTGAAGAATCTCATGCATCAGGAAGGAGAGAT
                      ____________________________________________________________
consensus             TCTCTTAATGGCAGAACAAGGGATGATTCTGAAGAATCTCATGCATCAGGAAGGAGAGAT
 
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rJMSF035K01+          TTGTCTGACATAGTGTCTTTTAAAAAGGCAAATTTCATTAAACATTGGAATACACCAGAA
rJMSF022N12+          TTGTCTGACATAGTGTCTTTTAAAAAGGCAAATTTCATTAAACATTGGAATACACCAGAA
                      ____________________________________________________________
consensus             TTGTCTGACATAGTGTCTTTTAAAAAGGCAAATTTCATTAAACATTGGAATACACCAGAA
 
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rJMSF035K01+          GATGTGCCTTTTGATACAATTATATGTTTAAGTGTGTCAAAATGGGTGCAGTTGAATTGG
rJMSF022N12+          GATGTGCCTTTTGATACAATTATATGTTTAAGTGTGTCAAAATGGGTGCAGTTGAATTGG
                      ____________________________________________________________
consensus             GATGTGCCTTTTGATACAATTATATGTTTAAGTGTGTCAAAATGGGTGCAGTTGAATTGG
 
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rJMSF035K01+          GGTGATGAGGGATTAATCACCTTATTTGTGAAAGCCTGGAGGCTTCTTCGACCGGGTGGT
rJMSF022N12+          GGTGATGAGGGATTAATCACCTTATTTGTGAAAGCCTGGAGGCTTCTTCGACCGGGTGGT
                      ____________________________________________________________
consensus             GGTGATGAGGGATTAATCACCTTATTTGTGAAAGCCTGGAGGCTTCTTCGACCGGGTGGT
 
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rJMSF035K01+          GTGTTTATTTTGGAACCGCAGCCCTGGAATTCATATCATAAAAATCGTCTTGTCTCAGAG
rJMSF022N12+          GTGTTTATTTTGGAACCGCAGCCCTGGAATTCATATCATAAAAATCGTCTTGTCTCAGAG
                      ____________________________________________________________
consensus             GTGTTTATTTTGGAACCGCAGCCCTGGAATTCATATCATAAAAATCGTCTTGTCTCAGAG
 
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rJMSF035K01+          ACAACTAGAATTAATTATCAAAATATAAAGATCCATCCCGAAGATTTTCAGGACGTACTT
rJMSF022N12+          ACAACTAGAATTAATTATCAAAATATAAAGATCCATCCCGAAGATTTTCAGGACGTACTT
                      ____________________________________________________________
consensus             ACAACTAGAATTAATTATCAAAATATAAAGATCCATCCCGAAGATTTTCAGGACGTACTT
 
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rJMSF035K01+          TTGGACAAGATTGGATTTCGGAGGGTAGAAGACATAACTTCTAATGCGTCTGGTCAAAAA
rJMSF022N12+          TTGGACAAGATTGGATTTCGGAGGGTAGAAGACATAACTTCTAATGCGTCTGGTCAAAAA
                      ____________________________________________________________
consensus             TTGGACAAGATTGGATTTCGGAGGGTAGAAGACATAACTTCTAATGCGTCTGGTCAAAAA
 
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rJMSF035K01+          TCTGGATTTCAAAGACCTATTTTTGCATTCTGGAAATGATTGATCCACTTCTTCATGGAT
rJMSF022N12+          TCTGGATTTCAAAGACCTATTTTTGCATTCTGGAAATGATTGATCCACTTCTTCATGGAT
                      ____________________________________________________________
consensus             TCTGGATTTCAAAGACCTATTTTTGCATTCTGGAAATGATTGATCCACTTCTTCATGGAT
 
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rJMSF035K01+          GATAGTGAATGCCTTACTGTTATGTATATGCATATTTTGTATCAGATAGAGGGATTTACC
rJMSF022N12+          GATAGTGAATGCCTTACTGTTATGTATATGCATATTTTGTATCAGATAGAGGGATTTA-C
                      ____________________________________________________________
consensus             GATAGTGAATGCCTTACTGTTATGTATATGCATATTTTGTATCAGATAGAGGGATTTACC
 
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rJMSF035K01+          AGGTAAAATGTTGCATGTGATATTAGTTGGTGGTTTTGTCTTCACCACCCT         
rJMSF022N12+          AGGTAAAATGTTGCATGTGATATTAGTTGGTGGTTTTGTCTTCACCACCCTGTGACTGAT
                      ____________________________________________________________
consensus             AGGTAAAATGTTGCATGTGATATTAGTTGGTGGTTTTGTCTTCACCACCCTGTGACTGAT