Contig 011319:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021M17Sequence621010441 (5)dbj|BAI47572.1|3e-19phytoene synthase [Ipomoea sp. Kenyan]776011319 (5)dbj|BAI47572.1|5e-136phytoene synthase [Ipomoea sp. Kenyan]
JMSF024J21Sequence645010441 (5)dbj|BAI47572.1|9e-45phytoene synthase [Ipomoea sp. Kenyan]791011319 (5)dbj|BAI47572.1|1e-162phytoene synthase [Ipomoea sp. Kenyan]
JMSF038P07Sequence621010441 (5)dbj|BAI47572.1|2e-23phytoene synthase [Ipomoea sp. Kenyan]907011319 (5)dbj|BAI47572.1|3e-170phytoene synthase [Ipomoea sp. Kenyan]
JMSF046N03Sequence498011319 (5)gb|AET07434.1|6e-75phytoene synthase, partial [Ipomoea batatas]430011319 (5)gb|AET07434.1|2e-75phytoene synthase, partial [Ipomoea batatas]

Alignment

This contig is upended


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rJMSF038P07+                                         CTAATGACACCTGAGAGAAGAAGAGCTAT
                      ____________________________________________________________
consensus                                            CTAATGACACCTGAGAGAAGAAGAGCTAT
 
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rJMSF038P07+          CTGGGCGATTTATGTGTGGTGTAGGAGAACTGATGAACTTGTTGATGGGCCNTAATGCAT
                      ____________________________________________________________
consensus             CTGGGCGATTTATGTGTGGTGTAGGAGAACTGATGAACTTGTTGATGGGCCNTAATGCAT
 
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rJMSF024J21+                                 GATAGATGGGAGGATCGGCTGGAAGACGTATTCAGAG
rJMSF038P07+          CGCATATAACTCCAAAGGCCCTGGATAGATGGGAGGATCGGCTGGAAGACGTATTCAGAG
                      ____________________________________________________________
consensus             CGCATATAACTCCAAAGGCCCTGGATAGATGGGAGGATCGGCTGGAAGACGTATTCAGAG
 
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rJMSF024J21+          GGTGCCCGTTTGATATGCTTGACGCTGCACTATCAGATACAGTATCCAGGTTTCCAGTTG
rJMSF038P07+          GGTGCCCGTTTGATATGCTTGACGCTGCACTATCAGATACAGTATCCAGGTTTCCAGTTG
                      ____________________________________________________________
consensus             GGTGCCCGTTTGATATGCTTGACGCTGCACTATCAGATACAGTATCCAGGTTTCCAGTTG
 
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rJMSF024J21+          ATATTCAGCCCTTTAGGGATATGATTGAAGGAATGCGAATGGACCTCTGGAAGTCGAGAT
rJMSF038P07+          ATATTCAGCCCTTTAGGGATATGATTGAAGGAATGCGAATGGACCTCTGGAAGTCGAGAT
rJMSF021M17+             TTCAGCCCNTTAGGGATATGANTGAAGGAATGCGAATGGACNTCTGGAAGTCGAGAT
                      ____________________________________________________________
consensus             ATATTCAGCCCTTTAGGGATATGATTGAAGGAATGCGAATGGACCTCTGGAAGTCGAGAT
 
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rJMSF024J21+          ACGATAACTTTGATGAGCTATACCTGTACTGTTATTACGTTGCTGGTACGGTCGGTTTGA
rJMSF038P07+          ACGATAACTTTGATGAGCTATACCTGTACTGTTATTACGTTGCTGGTACGGTCGGTTTGA
rJMSF021M17+          ACGATAACTTTGATGAGCTATACCTGTACTGTTATTACGTTGCTGGTACGGTCGGTTTGA
                      ____________________________________________________________
consensus             ACGATAACTTTGATGAGCTATACCTGTACTGTTATTACGTTGCTGGTACGGTCGGTTTGA
 
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rJMSF024J21+          TGAGTGTCCCAGTTATGGGCATTGCGCCCGAATCGAAGGCAACTACAGAGAGTGTCTACA
rJMSF038P07+          TGAGTGTCCCAGTTATGGGCATTGCGCCCGAATCGAAGGCAACTACAGAGAGTGTCTACA
rJMSF021M17+          TGAGTGTCCCAGTTATGGGCATTGCGCCCGAATCGAAGGCAACTACAGAGAGTGTCTACA
                      ____________________________________________________________
consensus             TGAGTGTCCCAGTTATGGGCATTGCGCCCGAATCGAAGGCAACTACAGAGAGTGTCTACA
 
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rJMSF024J21+          ATGCCGCTTTGGCTTTAGGCATCGCAAATCAACTAACCAACATTCTCAGAGACGTAGGAG
rJMSF038P07+          ATGCCGCTTTGGCTTTAGGCATCGCAAATCAACTAACCAACATTCTCAGAGACGTAGGAG
rJMSF021M17+          ATGCCGCTTTGGCTTTAGGCATCGCAAATCAACTAACCAACATTCTCAGAGACGTAGGAG
                      ____________________________________________________________
consensus             ATGCCGCTTTGGCTTTAGGCATCGCAAATCAACTAACCAACATTCTCAGAGACGTAGGAG
 
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rJMSF046N03+                         GGAGGGTGTATTTACCTCAAGATGAATTAGCTCAAGCGGGACTTT
rJMSF024J21+          AGGATGCCAGACGGGGGAGGGTGTATTTACCTCAAGATGAATTAGCTCAAGCGGGACTTT
rJMSF038P07+          AGGATGCCAGACGGGGGAGGGTGTATTTACCTCAAGATGAATTAGCTCAAGCGGGACTTT
JMSF046N03-                          GGAGGGTGTATTTACCTCAAGATGAATTAGCTCAAGCGGGACTTT
rJMSF021M17+          AGGATGCCAGACGGGGGAGGGTGTATTTACCTCAAGATGAATTAGCTCAAGCGGGACTTT
                      ____________________________________________________________
consensus             AGGATGCCAGACGGGGGAGGGTGTATTTACCTCAAGATGAATTAGCTCAAGCGGGACTTT
 
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rJMSF046N03+          GTGATGAGGATATATATGCTGGAAAAGTTACTGATAAGTGGAGGAACTTCATGAAGAAGC
rJMSF024J21+          GTGATGAGGATATATATGCTGGAAAAGTTACTGATAAGTGGAGGAACTTCATGAAGAAGC
rJMSF038P07+          GTGATGAGGATATATATGCTGGAAAAGTTACTGATAAGTGGAGGAACTTCATGAAGAAGC
JMSF046N03-           GTGATGAGGATATATATGCTGGAAAAGTTACTGATAAGTGGAGGAACTTCATGAAGAAGC
rJMSF021M17+          GTGATGAGGATATATATGCTGGAAAAGTTACTGATAAGTGGAGGAACTTCATGAAGAAGC
                      ____________________________________________________________
consensus             GTGATGAGGATATATATGCTGGAAAAGTTACTGATAAGTGGAGGAACTTCATGAAGAAGC
 
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rJMSF046N03+          AAATTAAGAGAGCAAGGAAATTCTTCGACGAGGCAGAGAGAGGTGTGACTGAACTTAGCT
rJMSF024J21+          AAATTAAGAGAGCAAGGAAATTCTTCGACGAGGCAGAGAGAGGTGTGACTGAACTTAGCT
rJMSF038P07+          AAATTAAGAGAGCAAGGAAATTCTTCGACGAGGCAGAGAGAGGTGTGACTGAACTTAGCT
JMSF046N03-           AAATTAAGAGAGCAAGGAAATTCTTCGACGAGGCAGAGAGAGGTGTGACTGAACTTAGCT
rJMSF021M17+          AAATTAAGAGAGCAAGGAAATTCTTCGACGAGGCAGAGAGAGGTGTGACTGAACTTAGCT
                      ____________________________________________________________
consensus             AAATTAAGAGAGCAAGGAAATTCTTCGACGAGGCAGAGAGAGGTGTGACTGAACTTAGCT
 
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rJMSF046N03+          CCGCTAGTAGATGGCCGGTGTGGGCATCGCTGCTGTTGTACCGCAAGATACTGGACGAGA
rJMSF024J21+          CCGCTAGTAGATGGCCGGTGTGGGCATCGCTGCTGTTGTACCGCAAGATACTGGACGAGA
rJMSF038P07+          CCGCTAGTAGATGGCCGGTGTGGGCATCGCTGCTGTTGTACCGCAAGATACTGGACGAGA
JMSF046N03-           CCGCTAGTAGATGGCCGGTGTGGGCATCGCTGCTGTTGTACCGCAAGATACTGGACGAGA
rJMSF021M17+          CCGCTAGTAGATGGCCGGTGTGGGCATCGCTGCTGTTGTACCGCAAGATACTGGACGAGA
                      ____________________________________________________________
consensus             CCGCTAGTAGATGGCCGGTGTGGGCATCGCTGCTGTTGTACCGCAAGATACTGGACGAGA
 
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rJMSF046N03+          TCGAAGCCAATGACTACAACAACTTCACGAGGAGAGCCTATGTAAGCAAGCCGAAGAAAC
rJMSF024J21+          TCGAAGCCAATGACTACAACAACTTCACGAGGAGAGCCTATGTAAGCAAGCCGAAGAAAC
rJMSF038P07+          TCGAAGCCAATGACTACAACAACTTCACGAGGAGAGCCTATGTAAGCAAGCCGAAGAAAC
JMSF046N03-           TCGAAGCCAATGACTACAACAACTTCACGAGGAGAGCCTATGTAAGCAAGCCGAAGAAAC
rJMSF021M17+          TCGAAGCCAATGACTACAACAACTTCACGAGGAGAGCCTATGTAAGCAAGCCGAAGAAAC
                      ____________________________________________________________
consensus             TCGAAGCCAATGACTACAACAACTTCACGAGGAGAGCCTATGTAAGCAAGCCGAAGAAAC
 
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rJMSF046N03+          TGCTTGCATTGCCTATTGCATATGCAAAAGCTGCGATTCGACCATCATCAACTGCTTCCC
rJMSF024J21+          TGCTTGCATTGCCTATTGCATATGCAAAAGCTGCGATTCGACCATCATCAACTGCTTCCC
rJMSF038P07+          TGCTTGCATTGCCTATTGCATATGCAAAAGCTGCGATTCGACCATCATCAACTGCTTCCC
JMSF046N03-           TGCTTGCATTGCCTATTGCATATGCAAAAGCTGCGATTCGACCATCATCAACTGCTTCCC
rJMSF021M17+          TGCTTGCATTGCCTATTGCATATGCAAAAGCTGCGATTCGACCATCATCAACTGCTTCCC
                      ____________________________________________________________
consensus             TGCTTGCATTGCCTATTGCATATGCAAAAGCTGCGATTCGACCATCATCAACTGCTTCCC
 
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rJMSF046N03+          CTCTGGCAAAACGCTTGAACACAAAACTTATTATACTGTGTAATACTGTACTGAAGAAGC
rJMSF024J21+          CTCTGGCAAAA-GCTTGAACACAAAACTTATTATACTGTGTAATACTGTACTGAAGAAGC
rJMSF038P07+          CTCTGGCAAAA-GCTTGAACACAAAACTTATTATACTGTGTAATACTGTACTGAAGAAGC
JMSF046N03-           CTCTGGCAAAA-GCTTGAACACAAAACTTATTATACTGTGTAATACTGTACTGAAGAAGC
rJMSF021M17+          CTCTGGCAAAA-GCTTGAACACAAAACTTATTATACTGTGTAATACTGTACTGAAGAAGC
                      ____________________________________________________________
consensus             CTCTGGCAAAA-GCTTGAACACAAAACTTATTATACTGTGTAATACTGTACTGAAGAAGC
 
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rJMSF046N03+          TGAAAGCATTCTGTAC                                            
rJMSF024J21+          TGAAAGCATTCTGTACATTACAAC                                    
rJMSF038P07+          TGAAAGCATTCTGTACATTACAAC                                    
JMSF046N03-           TGAAAGCATTCTGTACATTACAACTTTGTAGTATTGCAATGTAAAATCAACAGTAGATAG
rJMSF021M17+          TGAAAGCATTCTGTACATTACAACTTTGTAGTATTGCAATGTAAAATCAACAGTAGATAG
                      ____________________________________________________________
consensus             TGAAAGCATTCTGTACATTACAACTTTGTAGTATTGCAATGTAAAATCAACAGTAGATAG
 
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JMSF046N03-           TGAATTCAGTTTCTCACTTCCAA                                     
rJMSF021M17+          TGAATTCAGTTTCTCACTTCCAAGTATGCCTCTTCAAGTTTCATATTCTTAACAGAGAAT
                      ____________________________________________________________
consensus             TGAATTCAGTTTCTCACTTCCAAGTATGCCTCTTCAAGTTTCATATTCTTAACAGAGAAT